Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38316 * 119.92247 * 2 1 4 4 C 1.38074 * 120.07434 * 179.97438 * 3 2 1 5 5 C 1.38948 * 119.92465 * 359.97438 * 4 3 2 6 6 N 1.39716 * 120.07382 * 179.97438 * 5 4 3 7 7 C 1.39715 * 119.99936 * 352.21737 * 6 5 4 8 8 C 1.39351 * 119.95492 * 317.86877 * 7 6 5 9 9 C 1.38474 * 120.42032 * 179.72136 * 8 7 6 10 10 C 1.37697 * 120.32858 * 0.56041 * 9 8 7 11 11 C 1.40754 * 119.89275 * 359.71992 * 10 9 8 12 12 C 1.41413 * 120.20602 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99969 * 147.64286 * 12 11 10 14 14 C 1.39924 * 119.99899 * 327.64842 * 12 11 10 15 15 N 1.30829 * 119.99981 * 163.35173 * 14 12 11 16 16 Si 1.86799 * 120.00141 * 343.35679 * 14 12 11 17 17 H 1.48491 * 109.47411 * 91.14048 * 16 14 12 18 18 H 1.48499 * 109.47058 * 211.14051 * 16 14 12 19 19 H 1.48505 * 109.46893 * 331.13546 * 16 14 12 20 20 C 1.38296 * 119.94919 * 138.14833 * 7 6 5 21 21 C 1.38907 * 119.84548 * 0.02562 * 5 4 3 22 22 C 1.50705 * 120.03588 * 180.02562 * 21 5 4 23 23 O 1.42900 * 109.47070 * 179.97438 * 22 21 5 24 24 C 1.38116 * 119.92840 * 0.27232 * 21 5 4 25 25 H 1.09002 * 109.46922 * 90.00023 * 1 2 3 26 26 H 1.08999 * 109.46698 * 209.99903 * 1 2 3 27 27 H 1.09001 * 109.47058 * 329.99760 * 1 2 3 28 28 H 1.08007 * 119.96116 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.03684 * 179.97438 * 4 3 2 30 30 H 0.97002 * 119.99365 * 172.21850 * 6 5 4 31 31 H 1.07993 * 119.78830 * 0.02562 * 8 7 6 32 32 H 1.08007 * 119.83560 * 180.25940 * 9 8 7 33 33 H 1.08000 * 120.05563 * 179.74359 * 10 9 8 34 34 H 0.97004 * 120.00600 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.16798 * 359.97438 * 20 7 6 36 36 H 1.08998 * 109.46939 * 59.99715 * 22 21 5 37 37 H 1.09006 * 109.47067 * 300.00290 * 22 21 5 38 38 H 0.96700 * 113.99635 * 60.00311 * 23 22 21 39 39 H 1.07998 * 119.96125 * 179.70879 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5778 1.2024 0.0005 5 6 4.2741 0.0000 0.0016 6 7 5.6713 0.0001 0.0016 7 6 6.3698 1.1988 -0.1633 8 6 5.9422 2.1289 -1.1088 9 6 6.6239 3.3225 -1.2763 10 6 7.7393 3.5986 -0.5177 11 6 8.1865 2.6662 0.4372 12 6 9.3310 2.9431 1.2203 13 1 9.3969 2.5694 2.2314 14 6 10.3781 3.7015 0.6852 15 7 11.2725 4.2332 1.4782 16 14 10.4989 3.9549 -1.1616 17 1 9.7718 5.1931 -1.5400 18 1 11.9262 4.0803 -1.5517 19 1 9.8948 2.7926 -1.8613 20 6 7.4880 1.4581 0.6081 21 6 3.5779 -1.2020 0.0016 22 6 4.3289 -2.5086 0.0034 23 8 3.3981 -3.5929 0.0036 24 6 2.1968 -1.1984 -0.0052 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6551 2.1331 0.0004 29 1 4.1159 2.1389 0.0001 30 1 6.1562 -0.8321 0.1161 31 1 5.0708 1.9195 -1.7114 32 1 6.2817 4.0385 -2.0091 33 1 8.2701 4.5291 -0.6549 34 1 11.9983 4.7592 1.1074 35 1 7.8228 0.7363 1.3384 36 1 4.9544 -2.5670 0.8941 37 1 4.9565 -2.5682 -0.8859 38 1 2.8074 -3.6043 -0.7619 39 1 1.6550 -2.1326 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214462344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = -10.762827 kcal Electronic energy + Delta-G solvation = -21164.858713 eV Core-core repulsion = 18036.315050 eV Total energy + Delta-G solvation = -3128.543663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.03133 -38.11062 -36.72511 -35.49019 -33.47085 -31.73383 -31.07066 -30.29914 -28.54386 -26.56825 -25.56163 -25.10365 -22.22378 -21.07174 -20.79237 -20.22864 -17.82202 -17.37518 -17.11999 -16.10460 -15.58507 -15.04781 -14.82715 -14.53099 -14.18266 -13.96706 -13.75215 -13.67460 -13.53302 -12.97172 -12.75298 -12.46926 -12.12098 -12.04395 -11.77800 -11.68034 -11.29102 -11.05417 -10.86765 -10.78200 -10.63167 -10.27631 -10.22235 -9.86003 -9.62612 -9.19695 -8.59801 -8.00879 -7.74050 -6.98811 -6.72216 -4.57837 1.53397 1.65384 2.50967 2.58015 3.07862 3.17572 3.27333 3.73941 3.93468 3.95676 4.29016 4.43769 4.77899 5.00249 5.11919 5.29962 5.30708 5.36628 5.42525 5.55894 5.62851 5.75217 5.89894 5.94099 6.07371 6.15445 6.17094 6.40977 6.50840 6.55511 6.62085 6.73161 6.82535 6.85046 7.11238 7.20401 7.40823 7.42747 7.52878 7.58061 7.80464 8.05789 8.17132 8.31144 8.56587 8.74139 10.03803 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.003953 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.718448 B = 7080.797142 C = 7619.256114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.149 4.149 3 C -0.078 4.078 4 C -0.178 4.178 5 C 0.220 3.780 6 N -0.683 5.683 7 C 0.182 3.818 8 C -0.262 4.262 9 C -0.063 4.063 10 C -0.247 4.247 11 C 0.111 3.889 12 C -0.450 4.450 13 H 0.091 0.909 14 C 0.085 3.915 15 N -0.810 5.810 16 Si 0.914 3.086 17 H -0.268 1.268 18 H -0.291 1.291 19 H -0.247 1.247 20 C -0.232 4.232 21 C -0.205 4.205 22 C 0.126 3.874 23 O -0.563 6.563 24 C -0.073 4.073 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.142 0.858 30 H 0.400 0.600 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.286 0.714 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.376 0.624 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.180 -7.816 -5.296 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.151 4.151 3 C -0.097 4.097 4 C -0.200 4.200 5 C 0.117 3.883 6 N -0.304 5.304 7 C 0.088 3.912 8 C -0.283 4.283 9 C -0.082 4.082 10 C -0.267 4.267 11 C 0.107 3.893 12 C -0.479 4.479 13 H 0.109 0.891 14 C -0.134 4.134 15 N -0.434 5.434 16 Si 0.740 3.260 17 H -0.194 1.194 18 H -0.219 1.219 19 H -0.170 1.170 20 C -0.254 4.254 21 C -0.210 4.210 22 C 0.049 3.951 23 O -0.368 6.368 24 C -0.092 4.092 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.160 0.840 30 H 0.236 0.764 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.223 0.777 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.570 -7.689 -4.648 16.275 hybrid contribution 0.243 0.196 -1.132 1.174 sum -13.327 -7.493 -5.780 16.345 Atomic orbital electron populations 1.20628 0.91756 1.02059 1.01462 1.19610 0.95593 0.93048 1.06883 1.20824 0.93491 0.97227 0.98170 1.21240 0.94198 0.97883 1.06694 1.17606 0.83245 0.93212 0.94254 1.42226 1.02330 1.08603 1.77212 1.17452 0.92791 0.85887 0.95036 1.20335 1.05595 0.97827 1.04583 1.20474 0.94906 0.95446 0.97342 1.21151 1.00298 1.00517 1.04720 1.17523 0.92228 0.89367 0.90188 1.19456 0.99713 1.27454 1.01255 0.89141 1.26133 0.94769 0.91463 1.01021 1.69684 1.11881 1.23666 1.38139 0.86296 0.76386 0.80901 0.82387 1.19421 1.21860 1.17040 1.20857 1.01192 0.98698 1.04617 1.20023 0.94694 0.94056 1.12229 1.20931 0.90171 0.82409 1.01636 1.86518 1.51465 1.49058 1.49801 1.20437 0.92424 0.97445 0.98853 0.92111 0.92223 0.92141 0.86423 0.84020 0.76418 0.88076 0.88424 0.87867 0.90400 0.87926 0.88771 0.92737 0.77700 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.15 -1.88 5.88 -104.58 -0.62 -2.49 16 3 C -0.08 -1.08 9.69 -39.61 -0.38 -1.47 16 4 C -0.18 -2.88 8.04 -39.38 -0.32 -3.19 16 5 C 0.22 3.49 6.40 -83.75 -0.54 2.95 16 6 N -0.68 -11.45 5.39 -8.45 -0.05 -11.49 16 7 C 0.18 3.66 5.84 -83.83 -0.49 3.17 16 8 C -0.26 -5.23 7.39 -39.08 -0.29 -5.52 16 9 C -0.06 -1.31 10.01 -39.69 -0.40 -1.70 16 10 C -0.25 -5.76 7.25 -38.83 -0.28 -6.04 16 11 C 0.11 2.72 5.05 -106.85 -0.54 2.18 16 12 C -0.45 -11.95 9.57 -37.74 -0.36 -12.31 16 13 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 14 C 0.08 2.19 5.41 -17.35 -0.09 2.10 16 15 N -0.81 -21.32 13.93 55.55 0.77 -20.55 16 16 Si 0.91 20.46 24.58 -169.99 -4.18 16.28 16 17 H -0.27 -5.82 6.55 56.52 0.37 -5.45 16 18 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.25 -5.67 7.03 56.52 0.40 -5.27 16 20 C -0.23 -5.21 9.71 -38.67 -0.38 -5.58 16 21 C -0.21 -2.79 5.90 -104.42 -0.62 -3.41 16 22 C 0.13 1.48 6.21 36.01 0.22 1.70 16 23 O -0.56 -6.23 12.70 -35.23 -0.45 -6.68 16 24 C -0.07 -0.91 8.87 -39.61 -0.35 -1.26 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 29 H 0.14 2.49 5.40 -52.48 -0.28 2.21 16 30 H 0.40 5.87 7.55 -40.82 -0.31 5.57 16 31 H 0.10 1.88 6.68 -52.49 -0.35 1.53 16 32 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.10 2.41 4.84 -52.49 -0.25 2.16 16 34 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 35 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 36 H 0.09 1.10 7.98 -51.93 -0.41 0.69 16 37 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 38 H 0.38 2.78 8.11 45.56 0.37 3.15 16 39 H 0.12 1.25 6.58 -52.49 -0.35 0.90 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -28.11 318.63 -8.29 -36.40 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -4.13 Total: 12.74 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -5.06 Total: -31.49 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.73 Total: -32.04 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.45 Total: -6.68 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.18 Total: 16.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.11 -8.29 -36.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214462344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.634 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds