Wall clock time and date at job start Tue Mar 31 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38316 * 119.92247 * 2 1 4 4 C 1.38074 * 120.07434 * 179.97438 * 3 2 1 5 5 C 1.38948 * 119.92465 * 359.97438 * 4 3 2 6 6 N 1.39716 * 120.07382 * 179.97438 * 5 4 3 7 7 C 1.39715 * 119.99936 * 352.21737 * 6 5 4 8 8 C 1.39351 * 119.95492 * 317.86877 * 7 6 5 9 9 C 1.38474 * 120.42032 * 179.72136 * 8 7 6 10 10 C 1.37697 * 120.32858 * 0.56041 * 9 8 7 11 11 C 1.40754 * 119.89275 * 359.71992 * 10 9 8 12 12 C 1.41413 * 120.20602 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99969 * 147.64286 * 12 11 10 14 14 C 1.39924 * 119.99899 * 327.64842 * 12 11 10 15 15 N 1.30829 * 119.99981 * 163.35173 * 14 12 11 16 16 Si 1.86799 * 120.00141 * 343.35679 * 14 12 11 17 17 H 1.48491 * 109.47411 * 91.14048 * 16 14 12 18 18 H 1.48499 * 109.47058 * 211.14051 * 16 14 12 19 19 H 1.48505 * 109.46893 * 331.13546 * 16 14 12 20 20 C 1.38296 * 119.94919 * 138.14833 * 7 6 5 21 21 C 1.38907 * 119.84548 * 0.02562 * 5 4 3 22 22 C 1.50705 * 120.03588 * 180.02562 * 21 5 4 23 23 O 1.42900 * 109.47070 * 179.97438 * 22 21 5 24 24 C 1.38116 * 119.92840 * 0.27232 * 21 5 4 25 25 H 1.09002 * 109.46922 * 90.00023 * 1 2 3 26 26 H 1.08999 * 109.46698 * 209.99903 * 1 2 3 27 27 H 1.09001 * 109.47058 * 329.99760 * 1 2 3 28 28 H 1.08007 * 119.96116 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.03684 * 179.97438 * 4 3 2 30 30 H 0.97002 * 119.99365 * 172.21850 * 6 5 4 31 31 H 1.07993 * 119.78830 * 0.02562 * 8 7 6 32 32 H 1.08007 * 119.83560 * 180.25940 * 9 8 7 33 33 H 1.08000 * 120.05563 * 179.74359 * 10 9 8 34 34 H 0.97004 * 120.00600 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.16798 * 359.97438 * 20 7 6 36 36 H 1.08998 * 109.46939 * 59.99715 * 22 21 5 37 37 H 1.09006 * 109.47067 * 300.00290 * 22 21 5 38 38 H 0.96700 * 113.99635 * 60.00311 * 23 22 21 39 39 H 1.07998 * 119.96125 * 179.70879 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5778 1.2024 0.0005 5 6 4.2741 0.0000 0.0016 6 7 5.6713 0.0001 0.0016 7 6 6.3698 1.1988 -0.1633 8 6 5.9422 2.1289 -1.1088 9 6 6.6239 3.3225 -1.2763 10 6 7.7393 3.5986 -0.5177 11 6 8.1865 2.6662 0.4372 12 6 9.3310 2.9431 1.2203 13 1 9.3969 2.5694 2.2314 14 6 10.3781 3.7015 0.6852 15 7 11.2725 4.2332 1.4782 16 14 10.4989 3.9549 -1.1616 17 1 9.7718 5.1931 -1.5400 18 1 11.9262 4.0803 -1.5517 19 1 9.8948 2.7926 -1.8613 20 6 7.4880 1.4581 0.6081 21 6 3.5779 -1.2020 0.0016 22 6 4.3289 -2.5086 0.0034 23 8 3.3981 -3.5929 0.0036 24 6 2.1968 -1.1984 -0.0052 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6551 2.1331 0.0004 29 1 4.1159 2.1389 0.0001 30 1 6.1562 -0.8321 0.1161 31 1 5.0708 1.9195 -1.7114 32 1 6.2817 4.0385 -2.0091 33 1 8.2701 4.5291 -0.6549 34 1 11.9983 4.7592 1.1074 35 1 7.8228 0.7363 1.3384 36 1 4.9544 -2.5670 0.8941 37 1 4.9565 -2.5682 -0.8859 38 1 2.8074 -3.6043 -0.7619 39 1 1.6550 -2.1326 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214462344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:16 Heat of formation + Delta-G solvation = -27.941400 kcal Electronic energy + Delta-G solvation = -21165.603632 eV Core-core repulsion = 18036.315050 eV Total energy + Delta-G solvation = -3129.288582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23178 -39.63149 -37.65524 -36.89346 -35.25287 -32.92284 -32.38934 -31.82605 -29.99753 -27.53106 -27.16167 -26.41624 -23.59455 -22.61247 -22.21779 -21.45507 -19.49559 -18.52845 -18.14334 -17.79731 -17.03484 -16.55822 -16.09161 -15.78708 -15.60208 -15.19200 -14.83184 -14.78998 -14.70078 -14.42625 -14.37490 -13.93669 -13.45196 -13.32263 -12.93902 -12.79162 -12.73877 -12.61922 -12.33000 -12.25232 -11.92145 -11.78083 -11.62644 -11.25084 -11.18815 -10.93506 -9.67212 -9.56913 -9.44096 -8.89664 -8.08126 -6.55515 0.40506 0.48704 0.75227 0.97765 1.27516 1.40724 1.49430 2.12456 2.40909 2.58211 2.88596 3.43871 3.50027 3.78481 4.04555 4.13362 4.27841 4.40424 4.44663 4.46688 4.48673 4.60401 4.70182 4.71656 4.89569 4.92564 4.95126 4.97494 5.07992 5.18875 5.28092 5.38930 5.50524 5.52301 5.69996 5.75875 5.80896 5.87223 5.95784 6.14823 6.30971 6.57160 6.68530 6.75894 6.76955 6.87422 8.19236 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.003953 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.718448 B = 7080.797142 C = 7619.256114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.143 4.143 3 C -0.087 4.087 4 C -0.199 4.199 5 C 0.192 3.808 6 N -0.683 5.683 7 C 0.195 3.805 8 C -0.244 4.244 9 C -0.062 4.062 10 C -0.262 4.262 11 C 0.095 3.905 12 C -0.489 4.489 13 H 0.053 0.947 14 C 0.049 3.951 15 N -0.853 5.853 16 Si 0.968 3.032 17 H -0.254 1.254 18 H -0.278 1.278 19 H -0.256 1.256 20 C -0.249 4.249 21 C -0.198 4.198 22 C 0.130 3.870 23 O -0.571 6.571 24 C -0.076 4.076 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.134 0.866 29 H 0.122 0.878 30 H 0.409 0.591 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.101 0.899 34 H 0.294 0.706 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.392 0.608 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.491 -9.004 -7.572 21.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.145 4.145 3 C -0.105 4.105 4 C -0.220 4.220 5 C 0.091 3.909 6 N -0.305 5.305 7 C 0.099 3.901 8 C -0.265 4.265 9 C -0.080 4.080 10 C -0.282 4.282 11 C 0.092 3.908 12 C -0.519 4.519 13 H 0.071 0.929 14 C -0.165 4.165 15 N -0.480 5.480 16 Si 0.791 3.209 17 H -0.179 1.179 18 H -0.205 1.205 19 H -0.179 1.179 20 C -0.271 4.271 21 C -0.203 4.203 22 C 0.052 3.948 23 O -0.378 6.378 24 C -0.095 4.095 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.246 0.754 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.242 0.758 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.933 -8.904 -6.925 20.346 hybrid contribution 0.881 0.377 -0.425 1.049 sum -16.052 -8.527 -7.350 19.606 Atomic orbital electron populations 1.20698 0.89272 1.03164 1.02720 1.20047 0.97445 0.92492 1.04483 1.21061 0.92727 0.98739 0.97996 1.21207 0.95332 0.97148 1.08351 1.17787 0.82538 0.94196 0.96368 1.42084 1.02902 1.07685 1.77877 1.17457 0.91824 0.87077 0.93716 1.20664 1.05296 0.97117 1.03421 1.20845 0.93652 0.96298 0.97223 1.21224 1.01505 1.00288 1.05169 1.17636 0.91966 0.90481 0.90762 1.19427 1.01944 1.30005 1.00517 0.92884 1.26802 0.94056 0.90957 1.04710 1.69718 1.13089 1.25428 1.39769 0.85467 0.77035 0.80816 0.77541 1.17894 1.20493 1.17939 1.20949 1.02427 0.98385 1.05321 1.20283 0.95353 0.93992 1.10643 1.20882 0.90227 0.81710 1.02013 1.86499 1.51748 1.48489 1.51060 1.20819 0.92070 0.98695 0.97884 0.90650 0.90858 0.91420 0.84794 0.86050 0.75402 0.85964 0.84955 0.88132 0.89606 0.88291 0.89115 0.91702 0.75767 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.01 71.24 0.71 -0.78 16 2 C -0.14 -3.08 5.88 -19.84 -0.12 -3.19 16 3 C -0.09 -2.17 9.69 22.25 0.22 -1.96 16 4 C -0.20 -6.08 8.04 22.40 0.18 -5.90 16 5 C 0.19 5.75 6.40 38.22 0.24 6.00 16 6 N -0.68 -22.17 5.39 -180.66 -0.97 -23.15 16 7 C 0.19 7.71 5.84 38.17 0.22 7.93 16 8 C -0.24 -9.25 7.39 22.59 0.17 -9.09 16 9 C -0.06 -2.43 10.01 22.20 0.22 -2.21 16 10 C -0.26 -12.16 7.25 22.76 0.17 -12.00 16 11 C 0.09 4.82 5.05 -21.31 -0.11 4.71 16 12 C -0.49 -27.67 9.57 23.46 0.22 -27.45 16 13 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 14 C 0.05 2.63 5.41 85.25 0.46 3.09 16 15 N -0.85 -47.19 13.93 21.82 0.30 -46.89 16 16 Si 0.97 42.73 24.58 68.60 1.69 44.41 16 17 H -0.25 -10.50 6.55 99.48 0.65 -9.85 16 18 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.26 -11.49 7.03 99.48 0.70 -10.79 16 20 C -0.25 -11.48 9.71 22.86 0.22 -11.26 16 21 C -0.20 -4.87 5.90 -19.73 -0.12 -4.99 16 22 C 0.13 2.70 6.21 71.24 0.44 3.14 16 23 O -0.57 -10.74 12.70 -148.98 -1.89 -12.63 16 24 C -0.08 -1.63 8.87 22.25 0.20 -1.43 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 27 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 28 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 29 H 0.12 4.14 5.40 -2.91 -0.02 4.13 16 30 H 0.41 11.64 7.55 -92.71 -0.70 10.94 16 31 H 0.12 4.17 6.68 -2.91 -0.02 4.15 16 32 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.10 4.67 4.84 -2.91 -0.01 4.65 16 34 H 0.29 14.56 8.30 -92.70 -0.77 13.79 16 35 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.09 1.97 7.98 -2.39 -0.02 1.95 16 37 H 0.07 1.23 8.13 -2.38 -0.02 1.22 16 38 H 0.39 4.28 8.11 -74.06 -0.60 3.68 16 39 H 0.15 2.34 6.58 -2.91 -0.02 2.32 16 Total: -1.00 -62.97 318.63 2.19 -60.78 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.27 Total: 32.85 kcal Atomic # 6 Polarization: -58.70 SS G_CDS: 3.34 Total: -55.37 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.67 Total: -70.04 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.89 Total: -12.63 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.69 Total: 44.41 kcal Total: -62.97 2.19 -60.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214462344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.839 kcal (2) G-P(sol) polarization free energy of solvation -62.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds