Wall clock time and date at job start Tue Mar 31 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38102 * 120.03981 * 2 1 4 4 C 1.38284 * 120.08296 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.92139 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.46711 * 90.00704 * 5 4 3 7 7 C 1.38327 * 120.15833 * 359.71543 * 4 3 2 8 8 C 1.38064 * 120.07652 * 0.54264 * 7 4 3 9 9 C 1.38958 * 120.04313 * 179.97438 * 2 1 3 10 10 N 1.39590 * 120.07792 * 0.03896 * 9 2 1 11 11 C 1.38811 * 119.99890 * 80.53212 * 10 9 2 12 12 C 1.39608 * 119.84804 * 0.15251 * 11 10 9 13 13 C 1.36316 * 120.16058 * 179.71896 * 12 11 10 14 14 C 1.40905 * 119.83585 * 0.54451 * 13 12 11 15 15 C 1.41102 * 120.15305 * 179.70161 * 14 13 12 16 16 H 1.07996 * 120.00572 * 205.88779 * 15 14 13 17 17 C 1.39852 * 119.99928 * 25.88769 * 15 14 13 18 18 N 1.30915 * 119.99732 * 18.61491 * 17 15 14 19 19 Si 1.86799 * 120.00111 * 198.61719 * 17 15 14 20 20 H 1.48503 * 109.47206 * 89.99842 * 19 17 15 21 21 H 1.48498 * 109.47055 * 209.99864 * 19 17 15 22 22 H 1.48497 * 109.47245 * 330.00090 * 19 17 15 23 23 C 1.40901 * 119.69425 * 359.72333 * 14 13 12 24 24 C 1.36309 * 119.84074 * 0.02562 * 23 14 13 25 25 H 1.09007 * 109.46770 * 270.01203 * 1 2 3 26 26 H 1.08999 * 109.47360 * 30.01296 * 1 2 3 27 27 H 1.09001 * 109.47184 * 150.01973 * 1 2 3 28 28 H 1.08005 * 119.96196 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47082 * 210.00373 * 5 4 3 30 30 H 1.08998 * 109.47384 * 330.00328 * 5 4 3 31 31 H 0.96706 * 113.99472 * 180.02562 * 6 5 4 32 32 H 1.08004 * 119.96236 * 180.27596 * 7 4 3 33 33 H 1.08006 * 120.03939 * 179.75227 * 8 7 4 34 34 H 0.96998 * 120.00202 * 260.54006 * 10 9 2 35 35 H 1.07996 * 119.91551 * 359.97026 * 12 11 10 36 36 H 1.07991 * 120.08197 * 180.29138 * 13 12 11 37 37 H 0.97002 * 120.00063 * 180.02562 * 18 17 15 38 38 H 1.08007 * 120.07937 * 179.97438 * 23 14 13 39 39 H 1.08002 * 119.91787 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1955 0.0000 4 6 3.5812 1.1966 -0.0005 5 6 4.3319 2.5032 0.0001 6 8 4.5698 2.9152 1.3476 7 6 4.2770 0.0011 0.0049 8 6 3.5926 -1.1980 -0.0005 9 6 2.2027 -1.2029 0.0005 10 7 1.5073 -2.4132 0.0003 11 6 0.9908 -2.9166 -1.1858 12 6 1.1714 -2.2114 -2.3770 13 6 0.6718 -2.7027 -3.5463 14 6 -0.0382 -3.9197 -3.5488 15 6 -0.5636 -4.4313 -4.7543 16 1 -1.4212 -5.0874 -4.7342 17 6 0.0262 -4.0887 -5.9752 18 7 1.2456 -3.6131 -6.0024 19 14 -0.9259 -4.3098 -7.5671 20 1 -1.6827 -3.0680 -7.8678 21 1 0.0214 -4.5927 -8.6751 22 1 -1.8732 -5.4443 -7.4238 23 6 -0.2215 -4.6234 -2.3419 24 6 0.2879 -4.1229 -1.1809 25 1 -0.3633 0.0002 1.0277 26 1 -0.3634 0.8898 -0.5140 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6583 2.1309 -0.0004 29 1 5.2844 2.3753 -0.5143 30 1 3.7410 3.2620 -0.5130 31 1 5.0497 3.7513 1.4243 32 1 5.3570 0.0056 0.0089 33 1 4.1365 -2.1310 -0.0003 34 1 1.3849 -2.9025 0.8288 35 1 1.7118 -1.2763 -2.3727 36 1 0.8164 -2.1584 -4.4678 37 1 1.6546 -3.3751 -6.8491 38 1 -0.7652 -5.5567 -2.3366 39 1 0.1478 -4.6610 -0.2550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214664862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:33 Heat of formation + Delta-G solvation = -4.194732 kcal Electronic energy + Delta-G solvation = -21138.869941 eV Core-core repulsion = 18010.611091 eV Total energy + Delta-G solvation = -3128.258849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.76952 -37.85465 -36.75839 -34.87554 -33.09256 -32.32482 -30.52707 -29.46850 -28.47998 -26.79196 -25.53778 -24.00735 -22.02406 -21.14112 -20.72322 -19.71328 -17.57784 -17.23886 -16.63680 -16.28858 -15.78349 -15.21357 -14.97742 -14.05670 -13.96762 -13.79160 -13.41459 -13.05711 -12.86956 -12.66614 -12.52993 -12.11320 -11.99671 -11.85245 -11.63223 -11.43463 -11.07900 -11.05679 -10.90676 -10.77606 -10.51183 -10.21038 -9.72547 -9.37651 -9.30388 -8.70898 -8.56226 -8.23421 -7.51896 -6.69461 -6.46905 -4.07951 1.42427 1.61170 2.88779 3.08109 3.14199 3.17483 3.31593 3.77176 4.03652 4.24348 4.43610 4.73012 4.87357 4.96132 5.15579 5.28572 5.30635 5.49419 5.71283 5.78766 5.87659 5.92357 6.02873 6.16494 6.24593 6.31339 6.44428 6.59396 6.70728 6.88995 6.90674 6.94926 7.12868 7.19529 7.32148 7.43896 7.58206 7.65520 7.80715 8.13159 8.28155 8.49663 8.65038 8.74814 9.02759 9.11107 10.34433 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.003880 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.126929 B = 7214.604746 C = 7776.624348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.096 4.096 4 C -0.106 4.106 5 C 0.121 3.879 6 O -0.569 6.569 7 C -0.100 4.100 8 C -0.128 4.128 9 C 0.185 3.815 10 N -0.717 5.717 11 C 0.083 3.917 12 C -0.149 4.149 13 C -0.126 4.126 14 C 0.082 3.918 15 C -0.468 4.468 16 H 0.074 0.926 17 C 0.076 3.924 18 N -0.804 5.804 19 Si 0.903 3.097 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.264 1.264 23 C -0.191 4.191 24 C -0.150 4.150 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.376 0.624 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.394 0.606 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.277 0.723 38 H 0.092 0.908 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 10.375 9.457 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.115 4.115 4 C -0.106 4.106 5 C 0.043 3.957 6 O -0.374 6.374 7 C -0.119 4.119 8 C -0.148 4.148 9 C 0.092 3.908 10 N -0.350 5.350 11 C -0.011 4.011 12 C -0.171 4.171 13 C -0.146 4.146 14 C 0.079 3.921 15 C -0.499 4.499 16 H 0.092 0.908 17 C -0.140 4.140 18 N -0.431 5.431 19 Si 0.728 3.272 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.188 1.188 23 C -0.211 4.211 24 C -0.171 4.171 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.223 0.777 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.229 0.771 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.506 9.982 9.299 14.367 hybrid contribution 0.066 0.212 -0.708 0.742 sum 4.573 10.194 8.591 14.094 Atomic orbital electron populations 1.20733 0.90881 1.03550 1.01688 1.20368 0.96686 0.92515 0.99762 1.20767 0.93146 0.97303 1.00303 1.19478 0.93599 0.93824 1.03728 1.20955 0.97937 0.93376 0.83400 1.86593 1.80017 1.44016 1.26780 1.20825 0.99372 0.91602 1.00066 1.21561 0.94174 0.98068 1.00956 1.17337 0.89805 0.86156 0.97538 1.41210 1.63788 1.21961 1.08084 1.17253 1.02988 0.95916 0.84988 1.20099 1.05165 0.99597 0.92212 1.20868 1.01484 0.96263 0.96011 1.17510 0.91670 0.90797 0.92149 1.19378 1.13319 1.26858 0.90340 0.90823 1.25805 0.94090 0.93218 1.00881 1.69870 1.11424 1.33559 1.28240 0.86408 0.80298 0.79594 0.80918 1.19502 1.20560 1.18820 1.20533 1.07510 1.00029 0.93056 1.19801 1.03977 0.96040 0.97332 0.91917 0.92226 0.89844 0.86331 0.92913 0.92935 0.77743 0.86338 0.85864 0.77080 0.89432 0.86699 0.91245 0.88935 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.77 36.01 0.35 -1.33 16 2 C -0.09 -1.45 5.44 -104.41 -0.57 -2.02 16 3 C -0.10 -1.39 9.35 -39.61 -0.37 -1.76 16 4 C -0.11 -1.46 5.51 -104.57 -0.58 -2.04 16 5 C 0.12 1.27 7.17 36.00 0.26 1.53 16 6 O -0.57 -6.02 13.64 -35.23 -0.48 -6.50 16 7 C -0.10 -1.42 9.69 -39.61 -0.38 -1.80 16 8 C -0.13 -2.02 9.97 -39.37 -0.39 -2.41 16 9 C 0.19 3.14 4.45 -83.78 -0.37 2.77 16 10 N -0.72 -12.74 4.70 -8.31 -0.04 -12.78 16 11 C 0.08 1.78 5.46 -83.68 -0.46 1.33 16 12 C -0.15 -3.52 8.83 -39.76 -0.35 -3.87 16 13 C -0.13 -3.31 8.63 -39.26 -0.34 -3.65 16 14 C 0.08 2.19 5.56 -106.79 -0.59 1.60 16 15 C -0.47 -12.64 9.02 -37.89 -0.34 -12.99 16 16 H 0.07 1.92 7.91 -52.49 -0.42 1.51 16 17 C 0.08 1.95 5.10 -17.34 -0.09 1.86 16 18 N -0.80 -21.38 11.09 55.54 0.62 -20.76 16 19 Si 0.90 19.18 29.60 -169.99 -5.03 14.15 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.19 -4.67 9.74 -39.27 -0.38 -5.05 16 24 C -0.15 -3.29 9.82 -39.77 -0.39 -3.68 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.08 1.47 6.10 -51.93 -0.32 1.15 16 28 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.38 1.97 9.12 45.56 0.42 2.39 16 32 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 33 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.39 6.17 8.82 -40.82 -0.36 5.81 16 35 H 0.09 2.01 6.68 -52.49 -0.35 1.66 16 36 H 0.12 3.14 6.28 -52.49 -0.33 2.82 16 37 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 38 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -29.91 329.75 -9.25 -39.17 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -4.29 Total: 13.28 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -5.00 Total: -31.52 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.58 Total: -33.54 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.48 Total: -6.50 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.91 -9.25 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214664862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.971 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds