Wall clock time and date at job start Tue Mar 31 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38122 * 120.04132 * 2 1 4 4 C 1.38264 * 120.07623 * 180.29755 * 3 2 1 5 5 C 1.50698 * 119.92637 * 179.70201 * 4 3 2 6 6 O 1.42904 * 109.46941 * 269.97482 * 5 4 3 7 7 C 1.38320 * 120.15450 * 359.67201 * 4 3 2 8 8 C 1.38078 * 120.07034 * 0.02562 * 7 4 3 9 9 C 1.38907 * 120.03735 * 179.67345 * 2 1 3 10 10 N 1.39719 * 120.07133 * 359.97438 * 9 2 1 11 11 C 1.39725 * 119.99277 * 172.40274 * 10 9 2 12 12 C 1.39343 * 119.96016 * 317.56686 * 11 10 9 13 13 C 1.38469 * 120.42525 * 180.28015 * 12 11 10 14 14 C 1.37689 * 120.32904 * 359.97438 * 13 12 11 15 15 C 1.40753 * 119.89368 * 0.02562 * 14 13 12 16 16 C 1.41415 * 120.20919 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00217 * 147.66689 * 16 15 14 18 18 C 1.39923 * 119.99545 * 327.67318 * 16 15 14 19 19 N 1.30838 * 119.99888 * 157.79337 * 18 16 15 20 20 Si 1.86798 * 120.00570 * 337.79265 * 18 16 15 21 21 H 1.48500 * 109.47111 * 92.77711 * 20 18 16 22 22 H 1.48499 * 109.47254 * 212.78177 * 20 18 16 23 23 H 1.48500 * 109.46886 * 332.78347 * 20 18 16 24 24 C 1.38302 * 119.94741 * 137.84100 * 11 10 9 25 25 H 1.09003 * 109.47591 * 270.32898 * 1 2 3 26 26 H 1.09000 * 109.46879 * 30.32589 * 1 2 3 27 27 H 1.08989 * 109.47456 * 150.32164 * 1 2 3 28 28 H 1.08004 * 119.96056 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.47521 * 29.97081 * 5 4 3 30 30 H 1.09000 * 109.47582 * 149.97683 * 5 4 3 31 31 H 0.96698 * 114.00601 * 179.97438 * 6 5 4 32 32 H 1.07991 * 119.96659 * 180.02562 * 7 4 3 33 33 H 1.08003 * 120.03607 * 179.97438 * 8 7 4 34 34 H 0.96995 * 120.00088 * 352.40879 * 10 9 2 35 35 H 1.08001 * 119.78402 * 0.27518 * 12 11 10 36 36 H 1.08005 * 119.83603 * 179.97438 * 13 12 11 37 37 H 1.07996 * 120.05780 * 180.02562 * 14 13 12 38 38 H 0.96994 * 120.00657 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.16181 * 359.70111 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5811 1.1965 -0.0062 5 6 4.3321 2.5030 -0.0130 6 8 4.5639 2.9122 -1.3624 7 6 4.2767 0.0009 -0.0056 8 6 3.5917 -1.1980 0.0007 9 6 2.2023 -1.2025 0.0069 10 7 1.5060 -2.4138 0.0143 11 6 2.1978 -3.6181 -0.1388 12 6 3.2160 -3.7203 -1.0846 13 6 3.9040 -4.9108 -1.2485 14 6 3.5894 -6.0074 -0.4775 15 6 2.5633 -5.9193 0.4820 16 6 2.2351 -7.0412 1.2778 17 1 1.8833 -6.9015 2.2893 18 6 2.3663 -8.3324 0.7547 19 7 2.4931 -9.3550 1.5608 20 14 2.3602 -8.5961 -1.0946 21 1 3.7560 -8.5809 -1.6013 22 1 1.7348 -9.9065 -1.4057 23 1 1.5851 -7.5103 -1.7469 24 6 1.8671 -4.7087 0.6447 25 1 -0.3634 0.0059 1.0276 26 1 -0.3633 0.8871 -0.5189 27 1 -0.3634 -0.8927 -0.5088 28 1 1.6585 2.1310 -0.0004 29 1 3.7437 3.2630 0.5010 30 1 5.2869 2.3760 0.4972 31 1 5.0436 3.7479 -1.4433 32 1 5.3566 0.0051 -0.0100 33 1 4.1354 -2.1312 0.0007 34 1 0.5425 -2.4187 0.1257 35 1 3.4701 -2.8655 -1.6938 36 1 4.6912 -4.9795 -1.9847 37 1 4.1291 -6.9336 -0.6087 38 1 2.5837 -10.2501 1.1983 39 1 1.0784 -4.6306 1.3784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214669063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:38 Heat of formation + Delta-G solvation = -8.086071 kcal Electronic energy + Delta-G solvation = -21017.038253 eV Core-core repulsion = 17888.610663 eV Total energy + Delta-G solvation = -3128.427590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.89142 -38.06383 -36.79111 -35.01090 -33.45488 -32.54182 -30.61243 -30.26761 -28.23988 -26.94203 -25.32596 -24.93201 -22.28837 -20.96592 -20.75928 -19.98551 -17.73602 -17.49900 -17.13934 -16.06870 -15.66006 -15.09720 -14.73321 -14.65032 -14.08243 -13.89386 -13.65420 -13.53259 -12.91969 -12.85618 -12.77307 -12.67036 -12.27773 -12.06176 -11.82002 -11.61935 -11.04520 -10.97335 -10.84539 -10.72513 -10.58007 -10.26593 -10.13100 -9.88372 -9.63035 -9.15149 -8.50381 -8.00992 -7.70058 -6.99612 -6.69486 -4.53916 1.60443 1.66122 2.54420 2.62009 3.10514 3.18591 3.29474 3.82248 3.90512 3.96613 4.43696 4.54090 4.89118 5.01461 5.16380 5.23444 5.28670 5.34794 5.43212 5.58609 5.66856 5.78523 5.95231 5.97993 6.10292 6.21815 6.28895 6.47616 6.56624 6.60956 6.68678 6.77884 6.86120 6.88634 7.15572 7.23563 7.46228 7.52481 7.58018 7.64188 7.84979 8.12323 8.21758 8.34722 8.61047 8.77146 10.03040 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030923 B = 0.003687 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.263098 B = 7592.624102 C = 7986.602294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.170 4.170 3 C -0.058 4.058 4 C -0.158 4.158 5 C 0.127 3.873 6 O -0.570 6.570 7 C -0.061 4.061 8 C -0.185 4.185 9 C 0.225 3.775 10 N -0.681 5.681 11 C 0.181 3.819 12 C -0.263 4.263 13 C -0.063 4.063 14 C -0.244 4.244 15 C 0.110 3.890 16 C -0.454 4.454 17 H 0.090 0.910 18 C 0.089 3.911 19 N -0.805 5.805 20 Si 0.908 3.092 21 H -0.267 1.267 22 H -0.289 1.289 23 H -0.248 1.248 24 C -0.232 4.232 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.116 0.884 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.373 0.627 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.402 0.598 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.285 0.715 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 17.473 -3.190 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.174 4.174 3 C -0.077 4.077 4 C -0.160 4.160 5 C 0.050 3.950 6 O -0.375 6.375 7 C -0.080 4.080 8 C -0.207 4.207 9 C 0.122 3.878 10 N -0.302 5.302 11 C 0.087 3.913 12 C -0.284 4.284 13 C -0.082 4.082 14 C -0.264 4.264 15 C 0.107 3.893 16 C -0.483 4.483 17 H 0.108 0.892 18 C -0.131 4.131 19 N -0.429 5.429 20 Si 0.734 3.266 21 H -0.192 1.192 22 H -0.216 1.216 23 H -0.171 1.171 24 C -0.254 4.254 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.219 0.781 32 H 0.135 0.865 33 H 0.160 0.840 34 H 0.238 0.762 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.233 16.510 -3.215 16.822 hybrid contribution -0.037 0.161 -0.498 0.524 sum 0.196 16.671 -3.713 17.080 Atomic orbital electron populations 1.20578 0.91524 1.02285 1.01747 1.19302 0.95626 0.91624 1.10853 1.20510 0.93104 0.96475 0.97601 1.19248 0.93480 0.93700 1.09616 1.20861 0.97636 0.93354 0.83121 1.86629 1.79938 1.43865 1.27054 1.20757 0.99198 0.91310 0.96778 1.21224 0.92586 0.99453 1.07410 1.17731 0.91589 0.85184 0.93308 1.42326 1.08764 1.02103 1.77011 1.17476 0.94368 0.84377 0.95068 1.20362 1.04940 0.98570 1.04500 1.20486 0.97586 0.92824 0.97342 1.21146 1.02534 0.98330 1.04380 1.17497 0.89150 0.92448 0.90224 1.19412 1.38942 0.88866 1.01058 0.89175 1.26116 0.90488 0.95570 1.00906 1.69736 1.33780 1.00953 1.38403 0.86360 0.79822 0.77931 0.82512 1.19240 1.21594 1.17140 1.20854 1.05459 0.94685 1.04396 0.91768 0.91713 0.92151 0.86607 0.93472 0.93312 0.78072 0.86459 0.83963 0.76151 0.88036 0.88444 0.87955 0.90435 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 9.51 36.01 0.34 -0.86 16 2 C -0.17 -2.45 5.90 -104.42 -0.62 -3.06 16 3 C -0.06 -0.79 9.35 -39.61 -0.37 -1.16 16 4 C -0.16 -2.18 5.51 -104.58 -0.58 -2.75 16 5 C 0.13 1.35 7.17 36.00 0.26 1.61 16 6 O -0.57 -6.33 13.64 -35.23 -0.48 -6.81 16 7 C -0.06 -0.91 9.69 -39.61 -0.38 -1.30 16 8 C -0.19 -3.13 8.05 -39.38 -0.32 -3.45 16 9 C 0.23 3.76 6.40 -83.75 -0.54 3.23 16 10 N -0.68 -11.91 5.33 -8.45 -0.05 -11.96 16 11 C 0.18 3.74 5.84 -83.83 -0.49 3.25 16 12 C -0.26 -5.42 7.39 -39.09 -0.29 -5.71 16 13 C -0.06 -1.35 10.01 -39.70 -0.40 -1.75 16 14 C -0.24 -5.79 7.40 -38.83 -0.29 -6.07 16 15 C 0.11 2.75 4.99 -106.85 -0.53 2.22 16 16 C -0.45 -12.13 9.52 -37.74 -0.36 -12.49 16 17 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 18 C 0.09 2.29 5.32 -17.34 -0.09 2.20 16 19 N -0.80 -21.22 13.93 55.55 0.77 -20.45 16 20 Si 0.91 20.51 24.90 -169.99 -4.23 16.28 16 21 H -0.27 -5.85 6.63 56.52 0.37 -5.48 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.25 -5.76 7.11 56.52 0.40 -5.36 16 24 C -0.23 -5.30 9.71 -38.67 -0.38 -5.68 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.06 0.69 6.67 -51.94 -0.35 0.34 16 28 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.37 2.13 9.12 45.56 0.42 2.55 16 32 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.14 2.60 5.38 -52.48 -0.28 2.32 16 34 H 0.40 6.19 6.95 -40.82 -0.28 5.91 16 35 H 0.10 1.98 6.68 -52.49 -0.35 1.63 16 36 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.10 2.43 5.29 -52.49 -0.28 2.15 16 38 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 39 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -29.20 321.47 -8.25 -37.45 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -4.08 Total: 12.42 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: -5.02 Total: -31.78 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.73 Total: -32.41 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.48 Total: -6.81 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.23 Total: 16.28 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.20 -8.25 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214669063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.364 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds