Wall clock time and date at job start Tue Mar 31 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 116.99616 * 2 1 4 4 C 1.38830 * 120.01684 * 359.97438 * 3 2 1 5 5 C 1.38196 * 120.10333 * 180.02562 * 4 3 2 6 6 C 1.38126 * 120.13708 * 359.97438 * 5 4 3 7 7 C 1.39003 * 120.02707 * 359.72958 * 6 5 4 8 8 N 1.39587 * 120.04925 * 180.27657 * 7 6 5 9 9 C 1.38688 * 119.99700 * 258.83480 * 8 7 6 10 10 C 1.38805 * 120.29743 * 3.51211 * 9 8 7 11 11 C 1.38122 * 120.02089 * 179.97438 * 10 9 8 12 12 C 1.38929 * 120.63395 * 0.02562 * 11 10 9 13 13 C 1.36425 * 120.60619 * 0.02562 * 12 11 10 14 14 C 1.40744 * 119.95239 * 359.70109 * 13 12 11 15 15 C 1.41010 * 120.31335 * 180.28124 * 14 13 12 16 16 H 1.08001 * 120.00345 * 207.79895 * 15 14 13 17 17 C 1.39912 * 120.00222 * 27.79311 * 15 14 13 18 18 N 1.30892 * 119.99561 * 12.39053 * 17 15 14 19 19 Si 1.86800 * 120.00522 * 192.39022 * 17 15 14 20 20 H 1.48500 * 109.47018 * 60.00020 * 19 17 15 21 21 H 1.48497 * 109.47221 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46753 * 300.00121 * 19 17 15 23 23 C 1.38556 * 120.01444 * 180.02562 * 3 2 1 24 24 C 1.50695 * 120.06741 * 359.97438 * 23 3 2 25 25 H 1.09004 * 109.46773 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47326 * 299.99846 * 1 2 3 27 27 H 1.08995 * 109.47199 * 60.00483 * 1 2 3 28 28 H 1.08002 * 119.94915 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.93155 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.99186 * 180.02562 * 6 5 4 31 31 H 0.96997 * 120.00156 * 78.84479 * 8 7 6 32 32 H 1.07993 * 119.99225 * 359.97438 * 10 9 8 33 33 H 1.08003 * 119.68284 * 179.97438 * 11 10 9 34 34 H 1.08001 * 119.69911 * 179.97438 * 12 11 10 35 35 H 1.08002 * 120.02558 * 179.97438 * 13 12 11 36 36 H 0.96996 * 120.00016 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.47104 * 90.00178 * 24 23 3 38 38 H 1.09000 * 109.47064 * 330.00344 * 24 23 3 39 39 H 1.08996 * 109.47427 * 210.00281 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2900 2.3754 -0.0005 5 6 1.9155 3.6077 -0.0011 6 6 3.2946 3.6855 -0.0005 7 6 4.0568 2.5231 0.0062 8 7 5.4505 2.6012 0.0126 9 6 6.1613 2.4045 -1.1619 10 6 5.4912 2.2020 -2.3605 11 6 6.2049 2.0072 -3.5269 12 6 7.5941 2.0110 -3.5158 13 6 8.2789 2.2066 -2.3522 14 6 7.5769 2.4133 -1.1499 15 6 8.2770 2.6222 0.0561 16 1 7.8275 2.3414 0.9971 17 6 9.5542 3.1931 0.0338 18 7 10.0016 3.7531 -1.0614 19 14 10.6208 3.1561 1.5669 20 1 10.8648 1.7468 1.9663 21 1 11.9173 3.8226 1.2841 22 1 9.9278 3.8702 2.6692 23 6 3.4295 1.2839 -0.0005 24 6 4.2522 0.0212 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.2115 2.3182 -0.0005 29 1 1.3248 4.5118 -0.0011 30 1 3.7809 4.6498 -0.0005 31 1 5.9217 2.7928 0.8384 32 1 4.4115 2.1966 -2.3811 33 1 5.6778 1.8497 -4.4564 34 1 8.1370 1.8568 -4.4366 35 1 9.3589 2.2074 -2.3543 36 1 10.8868 4.1492 -1.0768 37 1 4.4501 -0.2834 -1.0283 38 1 3.7050 -0.7689 0.5136 39 1 5.1963 0.2027 0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215799050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:50 Heat of formation + Delta-G solvation = 11.670177 kcal Electronic energy + Delta-G solvation = -21743.913331 eV Core-core repulsion = 18616.342436 eV Total energy + Delta-G solvation = -3127.570895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15685 -38.36570 -36.99289 -34.21561 -33.48490 -32.08958 -29.83279 -29.07607 -27.57059 -27.41906 -26.00550 -24.98514 -21.95729 -21.30273 -20.73176 -19.80277 -17.70158 -17.20929 -16.28698 -16.14260 -15.66110 -15.33950 -15.23454 -14.83645 -14.03030 -13.86174 -13.20862 -13.13809 -12.69669 -12.56988 -12.35809 -12.12712 -11.99601 -11.81923 -11.69696 -11.27694 -11.10974 -11.02645 -10.97297 -10.87639 -10.68203 -10.41715 -9.58255 -9.47654 -9.15028 -9.12325 -8.26055 -7.88994 -7.30568 -6.67975 -6.32657 -4.16262 1.55673 1.70363 2.86866 3.10787 3.13361 3.18757 3.27532 3.36621 3.97799 4.00044 4.49822 4.76964 4.91675 5.08979 5.11148 5.14117 5.38060 5.46093 5.63589 5.71133 5.81702 6.00918 6.13379 6.21697 6.31369 6.51080 6.55327 6.57835 6.66479 6.71918 6.85656 6.98503 7.07803 7.23265 7.31932 7.50978 7.58208 7.76495 7.88707 8.21366 8.25176 8.47923 8.76308 8.82555 9.01480 9.12469 10.34015 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.004813 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.610524 B = 5815.684451 C = 6303.539515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.125 3.875 4 C -0.219 4.219 5 C -0.084 4.084 6 C -0.160 4.160 7 C 0.213 3.787 8 N -0.702 5.702 9 C 0.107 3.893 10 C -0.159 4.159 11 C -0.197 4.197 12 C -0.142 4.142 13 C -0.135 4.135 14 C 0.072 3.928 15 C -0.467 4.467 16 H 0.070 0.930 17 C 0.076 3.924 18 N -0.806 5.806 19 Si 0.905 3.095 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.268 1.268 23 C -0.120 4.120 24 C -0.096 4.096 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.406 0.594 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.277 0.723 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.385 -2.949 3.260 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.080 3.920 4 C -0.238 4.238 5 C -0.103 4.103 6 C -0.181 4.181 7 C 0.118 3.882 8 N -0.334 5.334 9 C 0.010 3.990 10 C -0.182 4.182 11 C -0.217 4.217 12 C -0.162 4.162 13 C -0.155 4.155 14 C 0.068 3.932 15 C -0.498 4.498 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.433 5.433 19 Si 0.730 3.270 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.123 4.123 24 C -0.153 4.153 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.244 0.756 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.189 -3.031 3.103 13.884 hybrid contribution 0.339 0.436 0.857 1.020 sum -12.850 -2.595 3.960 13.694 Atomic orbital electron populations 1.22983 0.79110 1.03431 1.01073 1.86065 1.20682 1.27140 1.89004 1.18657 0.91465 0.83935 0.97977 1.21082 0.99386 0.92385 1.10986 1.20699 0.94214 0.96661 0.98709 1.21518 0.93575 0.98711 1.04261 1.17139 0.85009 0.90550 0.95470 1.41275 1.00590 1.81519 1.10025 1.17826 0.90934 1.05538 0.84666 1.20076 0.96908 1.08990 0.92191 1.20161 0.93882 1.11779 0.95917 1.20325 0.93726 1.04955 0.97187 1.20865 0.99735 1.03256 0.91658 1.17198 0.88096 0.93673 0.94231 1.19091 1.00020 1.37173 0.93507 0.91169 1.25743 0.97970 0.93084 0.97172 1.69815 1.18011 1.27448 1.28015 0.86426 0.79132 0.79302 0.82109 1.19109 1.20538 1.19322 1.19733 0.90364 0.96625 1.05577 1.20469 0.98980 0.93366 1.02491 0.88649 0.92975 0.92903 0.86048 0.86154 0.85777 0.75566 0.89457 0.89724 0.89790 0.86231 0.91188 0.91378 0.92286 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.44 9.54 -19.42 -0.19 -4.63 16 3 C 0.12 1.94 6.65 -39.25 -0.26 1.68 16 4 C -0.22 -2.98 9.04 -39.38 -0.36 -3.33 16 5 C -0.08 -1.16 10.03 -39.64 -0.40 -1.56 16 6 C -0.16 -2.63 9.97 -39.34 -0.39 -3.03 16 7 C 0.21 3.91 4.46 -83.80 -0.37 3.54 16 8 N -0.70 -14.45 4.33 -8.06 -0.03 -14.48 16 9 C 0.11 2.53 6.28 -83.28 -0.52 2.01 16 10 C -0.16 -3.69 9.21 -39.41 -0.36 -4.05 16 11 C -0.20 -4.56 10.03 -39.37 -0.40 -4.96 16 12 C -0.14 -3.42 9.96 -39.98 -0.40 -3.82 16 13 C -0.13 -3.51 8.61 -39.29 -0.34 -3.85 16 14 C 0.07 1.88 5.57 -106.63 -0.59 1.29 16 15 C -0.47 -11.92 8.44 -37.91 -0.32 -12.24 16 16 H 0.07 1.69 6.79 -52.49 -0.36 1.34 16 17 C 0.08 1.89 5.23 -17.33 -0.09 1.80 16 18 N -0.81 -20.90 10.86 55.55 0.60 -20.30 16 19 Si 0.91 18.73 29.58 -169.99 -5.03 13.70 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.12 -2.10 5.52 -104.26 -0.58 -2.68 16 24 C -0.10 -1.68 9.24 36.00 0.33 -1.34 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 28 H 0.12 1.29 6.29 -52.49 -0.33 0.96 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.41 8.23 7.11 -40.82 -0.29 7.94 16 32 H 0.09 1.94 6.78 -52.49 -0.36 1.59 16 33 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.08 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.12 3.23 6.20 -52.49 -0.33 2.90 16 36 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 0.93 7.53 -51.93 -0.39 0.53 16 39 H 0.07 1.31 7.45 -51.93 -0.39 0.93 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -28.03 323.98 -8.72 -36.75 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -4.90 Total: 13.36 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -4.06 Total: -29.29 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.57 Total: -34.78 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.19 Total: -4.63 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.03 -8.72 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215799050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.425 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds