Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38225 * 119.61840 * 2 1 4 4 C 1.38629 * 119.16218 * 180.02562 * 3 2 1 5 5 C 1.38664 * 118.41978 * 359.75318 * 4 3 2 6 6 C 1.38182 * 119.16476 * 0.49307 * 5 4 3 7 7 C 1.50708 * 119.62025 * 179.77340 * 6 5 4 8 8 O 1.42896 * 109.46619 * 359.72460 * 7 6 5 9 9 C 1.42907 * 113.99744 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46698 * 30.00137 * 9 8 7 11 11 C 1.50692 * 109.47102 * 270.00301 * 9 8 7 12 12 H 1.08001 * 119.99926 * 325.19410 * 11 9 8 13 13 C 1.37878 * 119.99989 * 145.19858 * 11 9 8 14 14 N 1.31512 * 120.00280 * 5.81848 * 13 11 9 15 15 Si 1.86806 * 119.99898 * 186.09639 * 13 11 9 16 16 H 1.48503 * 109.47032 * 269.72131 * 15 13 11 17 17 H 1.48500 * 109.47024 * 29.72434 * 15 13 11 18 18 H 1.48504 * 109.46814 * 149.72575 * 15 13 11 19 19 C 1.50696 * 109.47185 * 149.99700 * 9 8 7 20 20 C 1.38236 * 120.00149 * 36.39412 * 19 9 8 21 21 C 1.38231 * 120.00520 * 179.78766 * 20 19 9 22 22 C 1.38239 * 119.99528 * 0.43860 * 21 20 19 23 23 C 1.38237 * 120.00308 * 359.81656 * 22 21 20 24 24 C 1.38233 * 120.00129 * 216.66767 * 19 9 8 25 25 N 1.31858 * 119.62006 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47085 * 269.97252 * 1 2 3 27 27 H 1.08994 * 109.47095 * 29.97294 * 1 2 3 28 28 H 1.08997 * 109.47099 * 149.97677 * 1 2 3 29 29 H 1.08005 * 120.41765 * 0.02562 * 3 2 1 30 30 H 1.08005 * 120.79087 * 180.02562 * 4 3 2 31 31 H 1.08005 * 120.42094 * 180.24038 * 5 4 3 32 32 H 1.08997 * 109.46497 * 239.72428 * 7 6 5 33 33 H 1.08999 * 109.46907 * 119.72705 * 7 6 5 34 34 H 0.97000 * 119.99573 * 355.79532 * 14 13 11 35 35 H 1.08005 * 119.99823 * 359.97438 * 20 19 9 36 36 H 1.07996 * 120.00138 * 180.28007 * 21 20 19 37 37 H 1.08004 * 119.99706 * 179.83787 * 22 21 20 38 38 H 1.07991 * 120.00127 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.00426 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0341 0.0042 6 6 3.4767 -1.1947 -0.0011 7 6 4.1728 -2.5314 -0.0013 8 8 5.5877 -2.3315 -0.0019 9 6 6.3458 -3.5428 -0.0014 10 1 5.7839 -4.3232 -0.5147 11 6 6.6127 -3.9679 1.4195 12 1 6.7769 -3.2230 2.1841 13 6 6.6475 -5.3076 1.7433 14 7 6.5621 -6.2156 0.7958 15 14 6.8080 -5.8331 3.5287 16 1 8.2450 -5.9725 3.8764 17 1 6.1840 -4.8087 4.4042 18 1 6.1226 -7.1358 3.7248 19 6 7.6551 -3.3163 -0.7125 20 6 8.3106 -2.1060 -0.5847 21 6 9.5137 -1.8997 -1.2334 22 6 10.0568 -2.9006 -2.0171 23 6 9.3987 -4.1090 -2.1492 24 6 8.1977 -4.3168 -1.4970 25 7 2.1587 -1.1463 -0.0005 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6507 2.1373 0.0004 30 1 4.1367 2.1140 -0.0001 31 1 5.3057 -0.0804 0.0078 32 1 3.8844 -3.0910 -0.8911 33 1 3.8852 -3.0909 0.8889 34 1 6.4136 -5.9446 -0.1236 35 1 7.8843 -1.3226 0.0243 36 1 10.0281 -0.9557 -1.1299 37 1 10.9956 -2.7385 -2.5261 38 1 9.8228 -4.8908 -2.7618 39 1 7.6836 -5.2610 -1.6000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222706930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = 4.370386 kcal Electronic energy + Delta-G solvation = -21284.086849 eV Core-core repulsion = 18156.199411 eV Total energy + Delta-G solvation = -3127.887438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.09231 -38.62436 -36.76923 -33.61393 -32.69739 -32.36172 -30.59882 -30.11858 -28.04324 -26.41738 -25.68236 -23.17406 -22.25219 -21.83392 -21.21689 -20.41256 -17.30176 -16.59716 -16.28076 -15.87020 -15.43953 -14.96386 -14.79590 -14.37438 -14.00973 -13.82083 -13.63295 -13.45584 -12.93105 -12.88730 -12.59021 -12.38696 -12.17139 -12.02872 -11.91735 -11.56751 -11.26355 -10.88657 -10.62994 -10.35784 -10.22861 -9.89842 -9.77210 -9.55129 -9.19913 -8.66708 -8.62184 -8.35968 -8.17183 -7.68568 -6.55116 -4.30367 1.29847 1.46338 2.15596 2.18396 3.36696 3.40122 3.55798 3.93413 3.99128 4.38608 4.60069 4.77116 4.94038 5.05304 5.18365 5.19326 5.44574 5.54101 5.56174 5.59293 5.64014 5.74929 5.77242 5.79829 6.00583 6.05969 6.14243 6.26444 6.30219 6.35177 6.39513 6.43299 6.65683 6.82293 6.83186 6.92078 7.18873 7.28706 7.49131 7.75646 7.85880 7.99591 8.21944 8.47427 8.63438 9.41600 10.79634 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.005310 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.731125 B = 5271.455482 C = 6729.034144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.123 3.877 3 C -0.186 4.186 4 C -0.078 4.078 5 C -0.152 4.152 6 C 0.145 3.855 7 C 0.124 3.876 8 O -0.393 6.393 9 C 0.230 3.770 10 H 0.036 0.964 11 C -0.603 4.603 12 H 0.061 0.939 13 C 0.028 3.972 14 N -0.898 5.898 15 Si 1.071 2.929 16 H -0.285 1.285 17 H -0.286 1.286 18 H -0.282 1.282 19 C -0.033 4.033 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.150 4.150 23 C -0.124 4.124 24 C -0.119 4.119 25 N -0.486 5.486 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.270 0.730 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 11.443 -3.640 12.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.015 4.015 3 C -0.206 4.206 4 C -0.103 4.103 5 C -0.171 4.171 6 C 0.008 3.992 7 C 0.046 3.954 8 O -0.312 6.312 9 C 0.174 3.826 10 H 0.054 0.946 11 C -0.640 4.640 12 H 0.080 0.920 13 C -0.178 4.178 14 N -0.534 5.534 15 Si 0.898 3.102 16 H -0.212 1.212 17 H -0.212 1.212 18 H -0.207 1.207 19 C -0.033 4.033 20 C -0.125 4.125 21 C -0.148 4.148 22 C -0.168 4.168 23 C -0.142 4.142 24 C -0.137 4.137 25 N -0.198 5.198 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.164 0.836 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.913 9.507 -2.663 11.028 hybrid contribution 0.465 1.872 -0.891 2.124 sum -4.448 11.379 -3.554 12.724 Atomic orbital electron populations 1.20669 0.89103 1.03129 1.02866 1.21166 0.96720 0.88198 0.95459 1.21847 0.95042 0.98907 1.04823 1.21594 0.94337 0.98336 0.96081 1.22011 1.02684 0.92136 1.00291 1.21161 0.88852 0.95826 0.93325 1.20663 0.82591 0.90751 1.01391 1.87623 1.14364 1.33761 1.95476 1.18862 0.85761 0.82376 0.95579 0.94583 1.22271 1.53880 0.94868 0.93008 0.92042 1.25922 0.92984 0.92671 1.06220 1.70845 1.43910 1.36374 1.02228 0.83513 0.77025 0.75911 0.73730 1.21197 1.21186 1.20723 1.20357 0.98272 0.92802 0.91919 1.20863 0.94642 0.97488 0.99463 1.21004 0.96408 0.98607 0.98785 1.20861 0.99993 0.94492 1.01461 1.20951 0.95763 0.96987 1.00502 1.20959 0.96467 0.99047 0.97219 1.67101 1.09422 1.29677 1.13583 0.90633 0.91015 0.90583 0.85330 0.85103 0.83593 0.92408 0.90743 0.91797 0.86518 0.87301 0.87396 0.87140 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.17 36.01 0.37 -0.67 16 2 C 0.12 1.75 6.78 -82.58 -0.56 1.19 16 3 C -0.19 -2.34 9.74 -39.44 -0.38 -2.72 16 4 C -0.08 -1.04 10.18 -39.28 -0.40 -1.44 16 5 C -0.15 -2.50 9.41 -39.44 -0.37 -2.88 16 6 C 0.15 2.68 6.78 -82.59 -0.56 2.12 16 7 C 0.12 2.53 6.28 36.01 0.23 2.75 16 8 O -0.39 -8.75 7.62 -35.23 -0.27 -9.02 16 9 C 0.23 5.62 2.18 -29.04 -0.06 5.56 16 10 H 0.04 0.93 5.99 -51.93 -0.31 0.62 16 11 C -0.60 -16.26 8.62 -34.44 -0.30 -16.55 16 12 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 13 C 0.03 0.76 5.45 -17.82 -0.10 0.66 16 14 N -0.90 -25.39 13.63 55.43 0.76 -24.63 16 15 Si 1.07 24.56 29.91 -169.99 -5.08 19.48 16 16 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.03 -0.75 4.98 -104.63 -0.52 -1.27 16 20 C -0.11 -2.21 9.35 -39.58 -0.37 -2.58 16 21 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 22 C -0.15 -2.61 10.05 -39.58 -0.40 -3.01 16 23 C -0.12 -2.32 10.05 -39.58 -0.40 -2.72 16 24 C -0.12 -2.57 9.54 -39.58 -0.38 -2.95 16 25 N -0.49 -8.53 10.19 -5.74 -0.06 -8.58 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.15 2.47 7.00 -52.48 -0.37 2.10 16 32 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 33 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.27 7.47 5.21 -40.82 -0.21 7.26 16 35 H 0.12 2.37 7.67 -52.48 -0.40 1.97 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.12 2.60 6.86 -52.48 -0.36 2.24 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -30.02 333.69 -9.31 -39.33 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.08 Total: 5.66 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -4.60 Total: -27.25 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.70 Total: -33.22 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.27 Total: -9.02 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.02 -9.31 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222706930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.701 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds