Wall clock time and date at job start Tue Mar 31 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38225 * 119.61840 * 2 1 4 4 C 1.38629 * 119.16218 * 180.02562 * 3 2 1 5 5 C 1.38664 * 118.41978 * 359.75318 * 4 3 2 6 6 C 1.38182 * 119.16476 * 0.49307 * 5 4 3 7 7 C 1.50708 * 119.62025 * 179.77340 * 6 5 4 8 8 O 1.42896 * 109.46619 * 359.72460 * 7 6 5 9 9 C 1.42907 * 113.99744 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46698 * 30.00137 * 9 8 7 11 11 C 1.50692 * 109.47102 * 270.00301 * 9 8 7 12 12 H 1.08001 * 119.99926 * 325.19410 * 11 9 8 13 13 C 1.37878 * 119.99989 * 145.19858 * 11 9 8 14 14 N 1.31512 * 120.00280 * 5.81848 * 13 11 9 15 15 Si 1.86806 * 119.99898 * 186.09639 * 13 11 9 16 16 H 1.48503 * 109.47032 * 269.72131 * 15 13 11 17 17 H 1.48500 * 109.47024 * 29.72434 * 15 13 11 18 18 H 1.48504 * 109.46814 * 149.72575 * 15 13 11 19 19 C 1.50696 * 109.47185 * 149.99700 * 9 8 7 20 20 C 1.38236 * 120.00149 * 36.39412 * 19 9 8 21 21 C 1.38231 * 120.00520 * 179.78766 * 20 19 9 22 22 C 1.38239 * 119.99528 * 0.43860 * 21 20 19 23 23 C 1.38237 * 120.00308 * 359.81656 * 22 21 20 24 24 C 1.38233 * 120.00129 * 216.66767 * 19 9 8 25 25 N 1.31858 * 119.62006 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47085 * 269.97252 * 1 2 3 27 27 H 1.08994 * 109.47095 * 29.97294 * 1 2 3 28 28 H 1.08997 * 109.47099 * 149.97677 * 1 2 3 29 29 H 1.08005 * 120.41765 * 0.02562 * 3 2 1 30 30 H 1.08005 * 120.79087 * 180.02562 * 4 3 2 31 31 H 1.08005 * 120.42094 * 180.24038 * 5 4 3 32 32 H 1.08997 * 109.46497 * 239.72428 * 7 6 5 33 33 H 1.08999 * 109.46907 * 119.72705 * 7 6 5 34 34 H 0.97000 * 119.99573 * 355.79532 * 14 13 11 35 35 H 1.08005 * 119.99823 * 359.97438 * 20 19 9 36 36 H 1.07996 * 120.00138 * 180.28007 * 21 20 19 37 37 H 1.08004 * 119.99706 * 179.83787 * 22 21 20 38 38 H 1.07991 * 120.00127 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.00426 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0341 0.0042 6 6 3.4767 -1.1947 -0.0011 7 6 4.1728 -2.5314 -0.0013 8 8 5.5877 -2.3315 -0.0019 9 6 6.3458 -3.5428 -0.0014 10 1 5.7839 -4.3232 -0.5147 11 6 6.6127 -3.9679 1.4195 12 1 6.7769 -3.2230 2.1841 13 6 6.6475 -5.3076 1.7433 14 7 6.5621 -6.2156 0.7958 15 14 6.8080 -5.8331 3.5287 16 1 8.2450 -5.9725 3.8764 17 1 6.1840 -4.8087 4.4042 18 1 6.1226 -7.1358 3.7248 19 6 7.6551 -3.3163 -0.7125 20 6 8.3106 -2.1060 -0.5847 21 6 9.5137 -1.8997 -1.2334 22 6 10.0568 -2.9006 -2.0171 23 6 9.3987 -4.1090 -2.1492 24 6 8.1977 -4.3168 -1.4970 25 7 2.1587 -1.1463 -0.0005 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6507 2.1373 0.0004 30 1 4.1367 2.1140 -0.0001 31 1 5.3057 -0.0804 0.0078 32 1 3.8844 -3.0910 -0.8911 33 1 3.8852 -3.0909 0.8889 34 1 6.4136 -5.9446 -0.1236 35 1 7.8843 -1.3226 0.0243 36 1 10.0281 -0.9557 -1.1299 37 1 10.9956 -2.7385 -2.5261 38 1 9.8228 -4.8908 -2.7618 39 1 7.6836 -5.2610 -1.6000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222706930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:03 Heat of formation + Delta-G solvation = -11.583785 kcal Electronic energy + Delta-G solvation = -21284.778674 eV Core-core repulsion = 18156.199411 eV Total energy + Delta-G solvation = -3128.579263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31060 -40.24957 -38.46273 -35.42440 -34.00436 -33.61053 -32.22720 -31.66685 -29.30585 -28.03332 -27.26082 -25.05946 -23.46292 -23.29284 -22.53890 -22.08533 -19.28368 -18.04958 -17.67193 -17.21082 -16.98329 -16.44985 -16.27653 -15.76832 -15.70691 -15.37022 -15.16719 -14.89590 -14.54179 -14.12509 -13.94792 -13.82079 -13.63433 -13.26534 -13.12281 -13.03629 -12.71895 -12.54226 -12.28845 -12.02143 -11.90792 -11.70191 -11.56460 -10.81920 -10.68555 -10.42915 -10.33837 -9.72689 -9.71179 -9.42103 -8.70140 -6.47490 0.10668 0.32608 0.59358 0.62416 1.47378 1.55769 1.73903 2.42607 2.54716 2.73855 2.99914 3.14115 3.55764 3.76505 3.90314 4.09015 4.14329 4.20377 4.25072 4.28940 4.36283 4.41410 4.45593 4.62852 4.65210 4.71862 4.78859 4.80955 4.83194 4.89339 5.18464 5.20845 5.24151 5.26428 5.30161 5.66181 5.69325 5.76310 5.79199 5.89234 5.93548 6.23981 6.44862 6.52502 7.00985 7.32349 8.63449 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.005310 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.731125 B = 5271.455482 C = 6729.034144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.109 3.891 3 C -0.170 4.170 4 C -0.070 4.070 5 C -0.168 4.168 6 C 0.115 3.885 7 C 0.128 3.872 8 O -0.390 6.390 9 C 0.234 3.766 10 H 0.008 0.992 11 C -0.615 4.615 12 H 0.046 0.954 13 C -0.016 4.016 14 N -0.920 5.920 15 Si 1.112 2.888 16 H -0.272 1.272 17 H -0.275 1.275 18 H -0.278 1.278 19 C -0.065 4.065 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.137 4.137 23 C -0.124 4.124 24 C -0.142 4.142 25 N -0.517 5.517 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.176 0.824 30 H 0.169 0.831 31 H 0.133 0.867 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.261 0.739 35 H 0.112 0.888 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.140 0.860 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 14.499 -3.960 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.029 4.029 3 C -0.189 4.189 4 C -0.095 4.095 5 C -0.188 4.188 6 C -0.021 4.021 7 C 0.051 3.949 8 O -0.309 6.309 9 C 0.178 3.822 10 H 0.026 0.974 11 C -0.652 4.652 12 H 0.064 0.936 13 C -0.216 4.216 14 N -0.557 5.557 15 Si 0.934 3.066 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.203 1.203 19 C -0.065 4.065 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.155 4.155 23 C -0.141 4.141 24 C -0.161 4.161 25 N -0.229 5.229 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.193 0.807 30 H 0.187 0.813 31 H 0.151 0.849 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.158 0.842 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.171 12.576 -3.000 13.585 hybrid contribution 0.173 1.070 -0.887 1.401 sum -3.998 13.646 -3.887 14.742 Atomic orbital electron populations 1.20797 0.86249 1.04439 1.04001 1.21964 0.98660 0.87944 0.94335 1.22368 0.94768 1.00026 1.01749 1.22012 0.95158 0.98155 0.94204 1.21986 1.02104 0.93098 1.01612 1.20782 0.89709 0.94929 0.96688 1.20551 0.81891 0.92805 0.99692 1.87604 1.15261 1.32706 1.95346 1.18680 0.86761 0.82234 0.94512 0.97381 1.22440 1.53861 0.94779 0.94115 0.93581 1.27183 0.92338 0.92945 1.09182 1.70919 1.45859 1.36680 1.02219 0.82998 0.77801 0.75936 0.69903 1.19773 1.20056 1.20277 1.20286 0.97745 0.94608 0.93881 1.20949 0.96100 0.96525 1.00396 1.21425 0.94957 1.00400 0.97173 1.21383 1.00935 0.93066 1.00070 1.21312 0.94385 0.98665 0.99785 1.20981 0.98198 0.98181 0.98723 1.67040 1.08988 1.32086 1.14787 0.89431 0.87573 0.91440 0.80656 0.81332 0.84894 0.93317 0.93555 0.92718 0.87023 0.83405 0.82835 0.84235 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 10.17 71.24 0.72 -1.04 16 2 C 0.11 2.94 6.78 42.55 0.29 3.23 16 3 C -0.17 -3.66 9.74 22.36 0.22 -3.45 16 4 C -0.07 -1.70 10.18 22.47 0.23 -1.47 16 5 C -0.17 -5.66 9.41 22.36 0.21 -5.45 16 6 C 0.11 4.48 6.78 42.54 0.29 4.77 16 7 C 0.13 5.80 6.28 71.24 0.45 6.25 16 8 O -0.39 -18.90 7.62 -148.98 -1.14 -20.04 16 9 C 0.23 12.40 2.18 29.10 0.06 12.47 16 10 H 0.01 0.48 5.99 -2.39 -0.01 0.47 16 11 C -0.61 -35.24 8.62 25.60 0.22 -35.02 16 12 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 13 C -0.02 -0.91 5.45 84.66 0.46 -0.45 16 14 N -0.92 -54.90 13.63 21.45 0.29 -54.61 16 15 Si 1.11 50.91 29.91 68.60 2.05 52.96 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 C -0.06 -3.11 4.98 -19.87 -0.10 -3.21 16 20 C -0.12 -5.11 9.35 22.27 0.21 -4.90 16 21 C -0.12 -4.08 10.05 22.27 0.22 -3.85 16 22 C -0.14 -4.28 10.05 22.27 0.22 -4.06 16 23 C -0.12 -4.45 10.05 22.27 0.22 -4.23 16 24 C -0.14 -6.42 9.54 22.27 0.21 -6.21 16 25 N -0.52 -18.66 10.19 -172.07 -1.75 -20.41 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.11 1.19 8.08 -2.39 -0.02 1.17 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.13 4.71 7.00 -2.91 -0.02 4.69 16 32 H 0.05 2.20 8.09 -2.39 -0.02 2.18 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.26 15.64 5.21 -92.71 -0.48 15.15 16 35 H 0.11 4.68 7.67 -2.91 -0.02 4.66 16 36 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 38 H 0.14 4.13 8.06 -2.92 -0.02 4.11 16 39 H 0.10 4.63 6.86 -2.91 -0.02 4.61 16 Total: -1.00 -70.97 333.69 4.92 -66.04 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 1.32 Total: 22.68 kcal Atomic # 6 Polarization: -50.76 SS G_CDS: 4.14 Total: -46.62 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -1.46 Total: -75.02 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.14 Total: -20.04 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -70.97 4.92 -66.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222706930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.458 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds