Wall clock time and date at job start Tue Mar 31 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38222 * 120.41765 * 2 1 4 4 N 1.31856 * 120.76122 * 180.02562 * 3 2 1 5 5 C 1.31885 * 121.72640 * 359.71296 * 4 3 2 6 6 C 1.38186 * 120.76106 * 0.57825 * 5 4 3 7 7 C 1.50700 * 120.41641 * 179.70710 * 6 5 4 8 8 O 1.42908 * 109.47019 * 269.72360 * 7 6 5 9 9 C 1.42896 * 113.99807 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47526 * 329.99741 * 9 8 7 11 11 C 1.50700 * 109.47078 * 90.00554 * 9 8 7 12 12 H 1.07999 * 120.00376 * 32.26090 * 11 9 8 13 13 C 1.37875 * 119.99718 * 212.27126 * 11 9 8 14 14 N 1.31514 * 120.00341 * 3.31837 * 13 11 9 15 15 Si 1.86807 * 120.00121 * 183.32350 * 13 11 9 16 16 H 1.48491 * 109.47499 * 179.97438 * 15 13 11 17 17 H 1.48505 * 109.46558 * 299.99879 * 15 13 11 18 18 H 1.48503 * 109.47121 * 59.99263 * 15 13 11 19 19 C 1.50703 * 109.46800 * 210.00013 * 9 8 7 20 20 C 1.38231 * 120.00025 * 322.43400 * 19 9 8 21 21 C 1.38244 * 119.99827 * 179.78638 * 20 19 9 22 22 C 1.38228 * 119.99852 * 0.44610 * 21 20 19 23 23 C 1.38239 * 120.00241 * 359.81306 * 22 21 20 24 24 C 1.38232 * 120.00040 * 359.97438 * 23 22 21 25 25 C 1.38623 * 120.41763 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46884 * 269.97442 * 1 2 3 27 27 H 1.09003 * 109.47106 * 29.97189 * 1 2 3 28 28 H 1.08994 * 109.47056 * 149.97669 * 1 2 3 29 29 H 1.08003 * 119.62251 * 0.05067 * 3 2 1 30 30 H 1.07998 * 119.62128 * 180.30952 * 5 4 3 31 31 H 1.08996 * 109.47508 * 149.72387 * 7 6 5 32 32 H 1.09001 * 109.47301 * 29.71886 * 7 6 5 33 33 H 0.97000 * 120.00097 * 354.81024 * 14 13 11 34 34 H 1.08000 * 120.00251 * 0.02562 * 20 19 9 35 35 H 1.07997 * 119.99608 * 180.27508 * 21 20 19 36 36 H 1.07998 * 120.00157 * 179.82897 * 22 21 20 37 37 H 1.07994 * 119.99837 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.00484 * 179.97438 * 24 23 22 39 39 H 1.08010 * 120.79196 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0823 0.0046 6 6 3.5948 -1.1471 -0.0013 7 6 4.4026 -2.4193 -0.0020 8 8 4.6574 -2.8209 -1.3496 9 6 5.4215 -4.0231 -1.4632 10 1 6.0876 -4.1127 -0.6051 11 6 4.4910 -5.2079 -1.5027 12 1 3.5150 -5.1131 -1.9553 13 6 4.8856 -6.4127 -0.9610 14 7 6.0472 -6.5110 -0.3520 15 14 3.7706 -7.9058 -1.0921 16 1 4.4206 -9.0683 -0.4355 17 1 2.4770 -7.6177 -0.4221 18 1 3.5279 -8.2182 -2.5235 19 6 6.2368 -3.9823 -2.7299 20 6 5.7050 -3.4224 -3.8764 21 6 6.4546 -3.3810 -5.0373 22 6 7.7325 -3.9078 -5.0539 23 6 8.2624 -4.4725 -3.9088 24 6 7.5145 -4.5100 -2.7468 25 6 2.2089 -1.1954 -0.0005 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6676 2.1277 0.0008 30 1 5.3047 0.1285 0.0091 31 1 3.8464 -3.2033 0.5117 32 1 5.3490 -2.2491 0.5114 33 1 6.6585 -5.7580 -0.3492 34 1 4.7053 -3.0139 -3.8643 35 1 6.0407 -2.9396 -5.9318 36 1 8.3171 -3.8779 -5.9615 37 1 9.2606 -4.8844 -3.9219 38 1 7.9282 -4.9515 -1.8523 39 1 1.6888 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223043980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:18 Heat of formation + Delta-G solvation = 1.383711 kcal Electronic energy + Delta-G solvation = -21273.890546 eV Core-core repulsion = 18145.873596 eV Total energy + Delta-G solvation = -3128.016950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.12288 -38.62466 -36.77045 -33.59695 -33.49246 -32.24356 -30.47854 -30.11702 -27.28595 -26.64032 -25.55295 -23.21706 -22.86148 -21.76753 -20.87714 -20.44480 -17.30061 -16.85632 -16.48495 -16.26749 -15.62997 -14.94412 -14.25094 -14.14510 -14.03584 -13.82996 -13.60741 -13.37083 -12.87719 -12.77567 -12.74391 -12.62135 -12.51028 -12.18100 -11.97807 -11.73041 -11.13919 -10.92338 -10.62367 -10.37260 -10.24862 -9.82488 -9.72077 -9.48976 -9.27903 -8.75966 -8.64766 -8.42384 -8.17481 -7.70783 -6.56560 -4.32740 1.19427 1.41793 2.15163 2.18309 3.33216 3.36432 3.54059 3.84402 4.35044 4.47521 4.58556 4.76814 4.82772 5.05382 5.09887 5.15928 5.18937 5.46079 5.50019 5.56180 5.58144 5.63617 5.74456 5.75956 5.93889 6.00753 6.10990 6.16940 6.30026 6.33472 6.36390 6.55730 6.64283 6.81185 6.83088 6.84320 7.18599 7.28587 7.49013 7.74860 7.85225 7.98581 8.07855 8.46068 8.60849 9.39456 10.77343 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.005402 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.452426 B = 5182.310278 C = 6564.944651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.144 4.144 3 C 0.089 3.911 4 N -0.487 5.487 5 C 0.106 3.894 6 C -0.118 4.118 7 C 0.116 3.884 8 O -0.387 6.387 9 C 0.227 3.773 10 H 0.036 0.964 11 C -0.603 4.603 12 H 0.060 0.940 13 C 0.028 3.972 14 N -0.899 5.899 15 Si 1.068 2.932 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.285 1.285 19 C -0.035 4.035 20 C -0.104 4.104 21 C -0.130 4.130 22 C -0.149 4.149 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.057 4.057 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.269 0.731 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 9.398 -0.578 10.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.146 4.146 3 C -0.068 4.068 4 N -0.194 5.194 5 C -0.051 4.051 6 C -0.120 4.120 7 C 0.038 3.962 8 O -0.307 6.307 9 C 0.171 3.829 10 H 0.053 0.947 11 C -0.640 4.640 12 H 0.078 0.922 13 C -0.178 4.178 14 N -0.535 5.535 15 Si 0.895 3.105 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.036 4.036 20 C -0.122 4.122 21 C -0.148 4.148 22 C -0.167 4.167 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.083 4.083 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.168 0.832 30 H 0.171 0.829 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.599 8.717 -0.272 9.859 hybrid contribution -0.160 0.455 -0.422 0.641 sum -4.758 9.172 -0.695 10.356 Atomic orbital electron populations 1.20697 0.90372 1.03040 1.02367 1.20909 0.97470 0.94144 1.02103 1.22588 0.90085 0.97226 0.96881 1.67671 1.08299 1.31233 1.12246 1.22655 1.00261 0.87097 0.95062 1.20893 0.94551 0.96469 1.00041 1.20943 0.96872 0.91644 0.86735 1.87781 1.75242 1.44405 1.23255 1.18886 0.90013 0.83016 0.90956 0.94679 1.22267 1.02650 0.96172 1.42917 0.92174 1.25911 0.98797 1.00940 0.92117 1.70869 1.08868 1.35016 1.38712 0.83552 0.74833 0.75414 0.76679 1.20533 1.21221 1.21129 1.20391 0.92434 0.93629 0.97102 1.20880 0.99631 0.99486 0.92204 1.21015 0.94962 1.01093 0.97735 1.20862 0.96199 1.01862 0.97772 1.20948 0.99400 1.00570 0.93349 1.20951 0.94152 1.00415 0.98273 1.21493 0.93555 0.98345 0.94914 0.91101 0.91381 0.91238 0.83226 0.82904 0.92065 0.93573 0.91869 0.86548 0.87284 0.87357 0.87117 0.86565 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.04 36.01 0.36 -0.64 16 2 C -0.14 -1.87 5.90 -104.48 -0.62 -2.48 16 3 C 0.09 1.19 10.86 -17.55 -0.19 1.00 16 4 N -0.49 -7.60 10.36 -13.25 -0.14 -7.74 16 5 C 0.11 1.69 10.86 -17.55 -0.19 1.50 16 6 C -0.12 -1.97 5.53 -104.48 -0.58 -2.55 16 7 C 0.12 2.21 5.89 36.01 0.21 2.42 16 8 O -0.39 -8.72 9.19 -35.23 -0.32 -9.05 16 9 C 0.23 5.54 2.22 -29.03 -0.06 5.48 16 10 H 0.04 0.90 5.88 -51.93 -0.31 0.59 16 11 C -0.60 -16.10 8.62 -34.44 -0.30 -16.40 16 12 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 13 C 0.03 0.75 5.46 -17.82 -0.10 0.66 16 14 N -0.90 -25.16 13.62 55.43 0.75 -24.41 16 15 Si 1.07 24.15 29.91 -169.99 -5.08 19.07 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 19 C -0.03 -0.81 4.97 -104.62 -0.52 -1.33 16 20 C -0.10 -2.23 9.36 -39.58 -0.37 -2.60 16 21 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16 22 C -0.15 -2.62 10.05 -39.58 -0.40 -3.02 16 23 C -0.12 -2.34 10.05 -39.58 -0.40 -2.73 16 24 C -0.12 -2.59 9.60 -39.58 -0.38 -2.97 16 25 C -0.06 -0.87 9.54 -39.28 -0.37 -1.24 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.15 1.52 8.06 -52.48 -0.42 1.09 16 30 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.05 0.83 8.03 -51.93 -0.42 0.41 16 33 H 0.27 7.40 5.45 -40.82 -0.22 7.17 16 34 H 0.12 2.51 7.71 -52.49 -0.40 2.10 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.55 7.05 -52.49 -0.37 2.18 16 39 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -30.01 336.09 -9.17 -39.18 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.15 Total: 5.59 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -4.30 Total: -27.70 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.62 Total: -32.15 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.32 Total: -9.05 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.07 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.01 -9.17 -39.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223043980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.559 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds