Wall clock time and date at job start Tue Mar 31 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38223 * 119.62247 * 2 1 4 4 C 1.38620 * 119.16454 * 180.02562 * 3 2 1 5 5 C 1.38676 * 118.42256 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.42317 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47344 * 89.99598 * 6 5 4 8 8 C 1.42898 * 114.00186 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.46977 * 30.00714 * 8 7 6 10 10 C 1.50695 * 109.47453 * 270.00593 * 8 7 6 11 11 H 1.08003 * 120.00047 * 324.86945 * 10 8 7 12 12 C 1.37877 * 120.00047 * 144.87459 * 10 8 7 13 13 N 1.31515 * 120.00028 * 5.14414 * 12 10 8 14 14 Si 1.86804 * 119.99987 * 185.14510 * 12 10 8 15 15 H 1.48500 * 109.46919 * 59.99705 * 14 12 10 16 16 H 1.48500 * 109.47141 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47021 * 299.99856 * 14 12 10 18 18 C 1.50704 * 109.47003 * 150.00313 * 8 7 6 19 19 C 1.38238 * 119.99974 * 37.70450 * 18 8 7 20 20 C 1.38234 * 120.00043 * 179.80705 * 19 18 8 21 21 C 1.38235 * 119.99943 * 0.40551 * 20 19 18 22 22 C 1.38243 * 119.99798 * 359.84926 * 21 20 19 23 23 C 1.38229 * 120.00002 * 359.95963 * 22 21 20 24 24 C 1.38185 * 119.15928 * 0.02562 * 5 4 3 25 25 N 1.31853 * 119.61599 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.46699 * 269.97817 * 1 2 3 27 27 H 1.09005 * 109.46782 * 29.97188 * 1 2 3 28 28 H 1.08997 * 109.47197 * 149.97259 * 1 2 3 29 29 H 1.07999 * 120.41574 * 0.02562 * 3 2 1 30 30 H 1.08006 * 120.79354 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47105 * 210.00213 * 6 5 4 32 32 H 1.09005 * 109.46723 * 329.99743 * 6 5 4 33 33 H 0.97000 * 119.99769 * 180.02562 * 13 12 10 34 34 H 1.07997 * 119.99934 * 0.02562 * 19 18 8 35 35 H 1.07996 * 119.99780 * 180.22803 * 20 19 18 36 36 H 1.07995 * 120.00004 * 179.83258 * 21 20 19 37 37 H 1.08005 * 119.99900 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.00115 * 180.02562 * 23 22 21 39 39 H 1.08003 * 119.61773 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1903 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2267 -0.0343 -0.0016 6 6 5.7323 -0.0990 -0.0028 7 8 6.2092 -0.1199 1.3440 8 6 7.6325 -0.1817 1.4557 9 1 8.0861 0.3133 0.5970 10 6 8.0714 -1.6228 1.4945 11 1 7.4573 -2.3612 1.9886 12 6 9.2569 -1.9987 0.8994 13 7 10.0536 -1.0864 0.3868 14 14 9.7317 -3.8037 0.8213 15 1 8.6971 -4.5553 0.0664 16 1 11.0419 -3.9417 0.1361 17 1 9.8331 -4.3489 2.1989 18 6 8.0675 0.5102 2.7219 19 6 7.3070 0.3924 3.8702 20 6 7.7081 1.0237 5.0327 21 6 8.8652 1.7799 5.0447 22 6 9.6230 1.9020 3.8949 23 6 9.2239 1.2674 2.7335 24 6 3.4766 -1.1949 -0.0026 25 7 2.1586 -1.1463 -0.0005 26 1 -0.3632 -0.0004 1.0277 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6509 2.1372 0.0004 30 1 4.1367 2.1138 -0.0001 31 1 6.0567 -1.0035 -0.5173 32 1 6.1330 0.7749 -0.5166 33 1 10.8875 -1.3509 -0.0322 34 1 6.4013 -0.1959 3.8601 35 1 7.1158 0.9286 5.9308 36 1 9.1771 2.2754 5.9521 37 1 10.5268 2.4932 3.9041 38 1 9.8161 1.3625 1.8353 39 1 3.9754 -2.1528 -0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223266683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:09 Heat of formation + Delta-G solvation = 3.742837 kcal Electronic energy + Delta-G solvation = -21149.737962 eV Core-core repulsion = 18021.823312 eV Total energy + Delta-G solvation = -3127.914650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.06304 -38.43222 -36.63591 -33.59286 -32.60832 -32.11779 -30.64701 -29.97910 -28.51524 -26.59224 -24.65409 -23.30958 -22.90805 -21.63597 -21.07149 -20.16664 -16.85166 -16.43153 -16.21567 -15.93835 -15.59383 -15.06264 -14.52540 -14.27713 -14.19270 -13.71402 -13.51369 -13.34141 -12.94439 -12.51569 -12.47868 -12.31910 -12.25281 -12.12442 -11.82671 -11.39518 -11.19313 -11.00027 -10.73693 -10.34959 -10.20384 -10.05510 -9.63390 -9.48745 -9.24841 -8.72243 -8.59202 -8.46838 -8.03481 -7.66713 -6.22540 -4.30006 1.25709 1.47826 2.30249 2.31608 3.23753 3.27901 3.31647 3.89545 4.27731 4.43065 4.67664 4.84045 4.91804 5.10720 5.12743 5.22647 5.41047 5.53223 5.57096 5.61370 5.66635 5.77301 5.78485 5.87295 6.02351 6.11119 6.25406 6.30535 6.36365 6.45162 6.55788 6.63081 6.88008 6.91894 6.98632 7.09936 7.32854 7.45294 7.68272 7.70967 7.92905 8.07520 8.16876 8.27376 8.90568 9.37963 10.81868 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.005162 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.211971 B = 5423.157078 C = 6890.680533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.115 3.885 3 C -0.178 4.178 4 C -0.058 4.058 5 C -0.127 4.127 6 C 0.118 3.882 7 O -0.393 6.393 8 C 0.234 3.766 9 H 0.056 0.944 10 C -0.527 4.527 11 H 0.064 0.936 12 C 0.070 3.930 13 N -0.884 5.884 14 Si 0.898 3.102 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.028 4.028 19 C -0.109 4.109 20 C -0.134 4.134 21 C -0.151 4.151 22 C -0.131 4.131 23 C -0.106 4.106 24 C 0.122 3.878 25 N -0.490 5.490 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.267 0.733 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.298 5.820 -0.231 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.023 4.023 3 C -0.198 4.198 4 C -0.083 4.083 5 C -0.129 4.129 6 C 0.040 3.960 7 O -0.314 6.314 8 C 0.178 3.822 9 H 0.074 0.926 10 C -0.564 4.564 11 H 0.083 0.917 12 C -0.134 4.134 13 N -0.521 5.521 14 Si 0.725 3.275 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.028 4.028 19 C -0.127 4.127 20 C -0.153 4.153 21 C -0.169 4.169 22 C -0.149 4.149 23 C -0.125 4.125 24 C -0.035 4.035 25 N -0.200 5.200 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.143 0.857 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.714 5.069 -0.175 11.854 hybrid contribution 1.282 -0.232 -0.102 1.307 sum -9.432 4.837 -0.278 10.604 Atomic orbital electron populations 1.20666 0.89254 1.03045 1.02817 1.21250 0.96811 0.88644 0.95553 1.21873 0.94807 0.99016 1.04117 1.21534 0.94113 0.98182 0.94520 1.20929 0.97285 0.93996 1.00729 1.20902 0.87355 1.00830 0.86894 1.87770 1.25246 1.95146 1.23207 1.18852 0.76425 0.95052 0.91844 0.92610 1.21414 1.06136 0.92824 1.36058 0.91743 1.24994 0.96026 0.98049 0.94283 1.69882 1.11434 1.33173 1.37596 0.86554 0.77718 0.84667 0.78594 1.19907 1.21092 1.19968 1.20336 0.93828 0.91939 0.96722 1.20928 0.99901 0.99502 0.92373 1.20972 0.97223 0.99372 0.97686 1.20834 0.96659 1.01762 0.97676 1.20975 0.99425 1.01020 0.93528 1.21043 0.96749 0.96393 0.98267 1.22737 0.88744 0.98545 0.93440 1.67540 1.10019 1.29250 1.13162 0.90681 0.91038 0.90716 0.85186 0.84877 0.92024 0.93702 0.92352 0.86676 0.87569 0.87675 0.87408 0.85740 0.82417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.17 36.01 0.37 -0.62 16 2 C 0.12 1.58 6.78 -82.59 -0.56 1.02 16 3 C -0.18 -2.29 9.74 -39.45 -0.38 -2.67 16 4 C -0.06 -0.84 9.86 -39.28 -0.39 -1.22 16 5 C -0.13 -2.13 5.53 -104.48 -0.58 -2.71 16 6 C 0.12 2.24 5.89 36.00 0.21 2.45 16 7 O -0.39 -8.81 9.20 -35.23 -0.32 -9.13 16 8 C 0.23 5.70 2.40 -29.04 -0.07 5.63 16 9 H 0.06 1.45 6.91 -51.93 -0.36 1.09 16 10 C -0.53 -13.93 8.62 -34.44 -0.30 -14.23 16 11 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 12 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 13 N -0.88 -23.66 12.84 55.43 0.71 -22.95 16 14 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.03 -0.64 4.97 -104.62 -0.52 -1.16 16 19 C -0.11 -2.34 9.36 -39.58 -0.37 -2.71 16 20 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 21 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 22 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 23 C -0.11 -2.34 9.67 -39.59 -0.38 -2.72 16 24 C 0.12 2.03 10.86 -17.55 -0.19 1.84 16 25 N -0.49 -7.90 10.27 -9.47 -0.10 -8.00 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 32 H 0.04 0.81 8.04 -51.93 -0.42 0.39 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.12 2.48 7.71 -52.49 -0.40 2.07 16 35 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 38 H 0.12 2.83 8.05 -52.48 -0.42 2.41 16 39 H 0.16 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 340.25 15.07 5.13 5.13 Total: -1.00 -28.87 340.25 -9.43 -38.29 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.37 Total: 5.33 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -4.45 Total: -24.28 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.61 Total: -30.95 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.32 Total: -9.13 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.87 -9.43 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223266683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.036 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds