Wall clock time and date at job start Tue Mar 31 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38674 * 120.42041 * 2 1 4 4 C 1.38625 * 118.41909 * 179.78432 * 3 2 1 5 5 C 1.38225 * 119.16333 * 0.50879 * 4 3 2 6 6 N 1.31857 * 120.76077 * 359.73514 * 5 4 3 7 7 C 1.31881 * 121.72793 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.61839 * 180.02562 * 7 6 5 9 9 O 1.42902 * 109.46985 * 270.02162 * 8 7 6 10 10 C 1.42905 * 113.99922 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47133 * 29.99385 * 10 9 8 12 12 C 1.50704 * 109.46646 * 269.99983 * 10 9 8 13 13 H 1.07999 * 119.99968 * 324.87241 * 12 10 9 14 14 C 1.37872 * 119.99633 * 144.87433 * 12 10 9 15 15 N 1.31513 * 120.00524 * 5.14847 * 14 12 10 16 16 Si 1.86809 * 119.99844 * 185.14449 * 14 12 10 17 17 H 1.48503 * 109.47016 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47020 * 119.99994 * 16 14 12 19 19 H 1.48499 * 109.47110 * 240.00020 * 16 14 12 20 20 C 1.50697 * 109.46866 * 150.00131 * 10 9 8 21 21 C 1.38233 * 120.00148 * 37.70066 * 20 10 9 22 22 C 1.38239 * 119.99342 * 179.81148 * 21 20 10 23 23 C 1.38234 * 120.00326 * 0.39336 * 22 21 20 24 24 C 1.38231 * 119.99953 * 359.85606 * 23 22 21 25 25 C 1.38229 * 120.00156 * 359.96157 * 24 23 22 26 26 H 1.08991 * 109.47058 * 269.72125 * 1 2 3 27 27 H 1.08994 * 109.46822 * 149.71760 * 1 2 3 28 28 H 1.09001 * 109.46690 * 29.72239 * 1 2 3 29 29 H 1.08008 * 120.78722 * 0.02562 * 3 2 1 30 30 H 1.07998 * 120.41558 * 180.22153 * 4 3 2 31 31 H 1.07994 * 119.62118 * 179.74657 * 5 4 3 32 32 H 1.08999 * 109.47024 * 30.02079 * 8 7 6 33 33 H 1.08999 * 109.47256 * 150.02100 * 8 7 6 34 34 H 0.97006 * 120.00208 * 180.02562 * 15 14 12 35 35 H 1.07990 * 120.00164 * 359.97438 * 21 20 10 36 36 H 1.08009 * 119.99315 * 180.23311 * 22 21 20 37 37 H 1.08000 * 119.99788 * 179.84100 * 23 22 21 38 38 H 1.08006 * 119.99997 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00420 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 0.0046 5 6 4.2257 -0.0824 -0.0017 6 7 3.5254 -1.1996 -0.0068 7 6 2.2067 -1.1916 -0.0055 8 6 1.4539 -2.4971 -0.0109 9 8 1.2152 -2.9038 -1.3599 10 6 0.5031 -4.1371 -1.4778 11 1 -0.1576 -4.2587 -0.6194 12 6 1.4834 -5.2808 -1.5229 13 1 2.4359 -5.1564 -2.0166 14 6 1.1643 -6.4859 -0.9340 15 7 -0.0328 -6.6711 -0.4220 16 14 2.4324 -7.8558 -0.8635 17 1 3.6911 -7.3986 -1.5053 18 1 2.6993 -8.2107 0.5535 19 1 1.9147 -9.0471 -1.5831 20 6 -0.3145 -4.1260 -2.7436 21 6 0.1929 -3.5416 -3.8890 22 6 -0.5557 -3.5349 -5.0512 23 6 -1.8148 -4.1053 -5.0658 24 6 -2.3242 -4.6851 -3.9189 25 6 -1.5742 -4.6952 -2.7578 26 1 -0.3633 -0.0050 1.0276 27 1 -0.3633 -0.8874 -0.5182 28 1 -0.3633 0.8925 -0.5095 29 1 1.6890 2.1424 0.0004 30 1 4.1736 2.0591 0.0083 31 1 5.3046 -0.1287 -0.0024 32 1 2.0438 -3.2587 0.4992 33 1 0.5018 -2.3697 0.5041 34 1 -0.2572 -7.5189 -0.0074 35 1 1.1750 -3.0927 -3.8766 36 1 -0.1577 -3.0817 -5.9472 37 1 -2.4005 -4.0978 -5.9731 38 1 -3.3081 -5.1304 -3.9302 39 1 -1.9723 -5.1478 -1.8617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223340744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:30 Heat of formation + Delta-G solvation = 7.464070 kcal Electronic energy + Delta-G solvation = -21560.606655 eV Core-core repulsion = 18432.853369 eV Total energy + Delta-G solvation = -3127.753286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10100 -38.39624 -36.50871 -33.52896 -33.02487 -32.04207 -30.50014 -29.95001 -27.52218 -26.67761 -25.77433 -23.03149 -22.28930 -21.64521 -21.17933 -20.13381 -16.88098 -16.53709 -16.30661 -15.94843 -15.57615 -14.85936 -14.48603 -14.23512 -13.96762 -13.70878 -13.38612 -13.28015 -12.91473 -12.55364 -12.49923 -12.34950 -12.27668 -11.98016 -11.74073 -11.23249 -11.17921 -10.97063 -10.66044 -10.29658 -10.17735 -9.94546 -9.59147 -9.45012 -9.11007 -8.68184 -8.56496 -8.41979 -8.01061 -7.63389 -6.17351 -4.23366 1.26113 1.46533 2.32692 2.33887 3.25362 3.33365 3.40315 3.89571 4.33673 4.50423 4.73900 4.85862 4.93307 5.10972 5.17355 5.18298 5.33587 5.57122 5.68530 5.74072 5.75218 5.79919 5.88970 5.95359 6.02089 6.21664 6.25668 6.37913 6.40392 6.47628 6.57402 6.60868 6.90037 6.92160 7.01462 7.13374 7.35319 7.48413 7.71694 7.77537 7.95778 8.12753 8.29144 8.33152 8.97502 9.44150 10.87266 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.006092 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.154884 B = 4594.770224 C = 6051.140591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.178 4.178 5 C 0.088 3.912 6 N -0.463 5.463 7 C 0.143 3.857 8 C 0.122 3.878 9 O -0.390 6.390 10 C 0.234 3.766 11 H 0.056 0.944 12 C -0.521 4.521 13 H 0.066 0.934 14 C 0.069 3.931 15 N -0.885 5.885 16 Si 0.897 3.103 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.283 1.283 20 C -0.027 4.027 21 C -0.109 4.109 22 C -0.134 4.134 23 C -0.151 4.151 24 C -0.131 4.131 25 C -0.106 4.106 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.265 0.735 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 12.572 0.262 12.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.198 4.198 5 C -0.069 4.069 6 N -0.172 5.172 7 C 0.005 3.995 8 C 0.045 3.955 9 O -0.310 6.310 10 C 0.178 3.822 11 H 0.074 0.926 12 C -0.558 4.558 13 H 0.084 0.916 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.724 3.276 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.209 1.209 20 C -0.028 4.028 21 C -0.127 4.127 22 C -0.153 4.153 23 C -0.169 4.169 24 C -0.149 4.149 25 C -0.124 4.124 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.130 11.719 0.190 11.721 hybrid contribution 0.260 -0.221 0.148 0.371 sum 0.389 11.498 0.338 11.510 Atomic orbital electron populations 1.20820 0.90202 1.03822 1.02384 1.20787 0.97749 0.93444 1.00253 1.21424 0.94150 0.97839 0.97611 1.22069 0.95259 0.99423 1.03026 1.22730 1.00192 0.87713 0.96296 1.67540 1.08049 1.31207 1.10382 1.21185 0.89419 0.94651 0.94229 1.20888 0.96598 0.90793 0.87242 1.87760 1.78205 1.42302 1.22698 1.18864 0.90473 0.81017 0.91813 0.92590 1.21501 1.02296 0.96271 1.35778 0.91606 1.24989 0.95471 0.98668 0.94329 1.69899 1.19081 1.25216 1.38105 0.86446 0.81802 0.81470 0.77878 1.19407 1.20719 1.20886 1.20330 0.92462 0.93257 0.96728 1.20934 0.99626 0.99735 0.92391 1.20969 0.95219 1.01405 0.97665 1.20824 0.96467 1.01948 0.97687 1.20966 0.99488 1.00932 0.93551 1.21040 0.93987 0.99096 0.98270 0.91082 0.89862 0.91582 0.85193 0.85230 0.83090 0.91479 0.92900 0.92534 0.86685 0.87608 0.87712 0.87431 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.21 36.01 0.33 -1.17 16 2 C -0.12 -1.82 5.90 -104.48 -0.62 -2.43 16 3 C -0.08 -1.06 9.86 -39.28 -0.39 -1.44 16 4 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16 5 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 6 N -0.46 -8.54 10.27 -9.48 -0.10 -8.64 16 7 C 0.14 2.62 6.41 -82.59 -0.53 2.09 16 8 C 0.12 2.50 5.22 36.00 0.19 2.69 16 9 O -0.39 -9.09 9.19 -35.23 -0.32 -9.41 16 10 C 0.23 5.82 2.40 -29.03 -0.07 5.76 16 11 H 0.06 1.47 6.91 -51.93 -0.36 1.11 16 12 C -0.52 -14.26 8.62 -34.44 -0.30 -14.56 16 13 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 14 C 0.07 1.86 5.45 -17.82 -0.10 1.76 16 15 N -0.89 -24.15 12.84 55.43 0.71 -23.44 16 16 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.03 -0.63 4.97 -104.62 -0.52 -1.15 16 21 C -0.11 -2.36 9.36 -39.58 -0.37 -2.73 16 22 C -0.13 -2.54 10.05 -39.58 -0.40 -2.93 16 23 C -0.15 -2.71 10.05 -39.59 -0.40 -3.11 16 24 C -0.13 -2.50 10.05 -39.59 -0.40 -2.90 16 25 C -0.11 -2.33 9.67 -39.58 -0.38 -2.71 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.26 6.71 -51.93 -0.35 0.91 16 28 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 30 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.05 0.98 6.63 -51.93 -0.34 0.64 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.12 2.53 7.71 -52.49 -0.40 2.13 16 36 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 37 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.12 2.84 8.05 -52.49 -0.42 2.42 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -30.06 336.51 -9.42 -39.48 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.23 Total: 4.97 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -4.54 Total: -24.31 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.61 Total: -32.08 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.32 Total: -9.41 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.06 -9.42 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223340744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.947 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds