Wall clock time and date at job start Tue Mar 31 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31889 * 119.61251 * 2 1 4 4 C 1.31860 * 121.72221 * 180.31528 * 3 2 1 5 5 C 1.38221 * 120.76345 * 359.69987 * 4 3 2 6 6 C 1.38632 * 119.16359 * 0.02562 * 5 4 3 7 7 C 1.38174 * 119.62247 * 179.72952 * 2 1 3 8 8 C 1.50703 * 120.41548 * 359.97438 * 7 2 1 9 9 O 1.42905 * 109.47264 * 179.72486 * 8 7 2 10 10 C 1.42901 * 114.00134 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47135 * 330.00392 * 10 9 8 12 12 C 1.50705 * 109.46672 * 90.00167 * 10 9 8 13 13 H 1.08003 * 119.99555 * 239.99838 * 12 10 9 14 14 C 1.37876 * 120.00014 * 60.00103 * 12 10 9 15 15 N 1.31510 * 120.00129 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99838 * 179.97438 * 14 12 10 17 17 H 1.48509 * 109.46933 * 59.99951 * 16 14 12 18 18 H 1.48493 * 109.47232 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47058 * 300.00437 * 16 14 12 20 20 C 1.50700 * 109.46871 * 209.99952 * 10 9 8 21 21 C 1.38229 * 120.00309 * 324.72438 * 20 10 9 22 22 C 1.38230 * 120.00228 * 179.78808 * 21 20 10 23 23 C 1.38239 * 119.99939 * 0.44754 * 22 21 20 24 24 C 1.38239 * 119.99604 * 359.80532 * 23 22 21 25 25 C 1.38233 * 120.00416 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47285 * 270.26626 * 1 2 3 27 27 H 1.08994 * 109.47574 * 30.27093 * 1 2 3 28 28 H 1.09006 * 109.46990 * 150.27223 * 1 2 3 29 29 H 1.07996 * 119.61454 * 179.72638 * 4 3 2 30 30 H 1.08006 * 120.42083 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.79162 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47438 * 59.72229 * 8 7 2 33 33 H 1.09004 * 109.47113 * 299.72484 * 8 7 2 34 34 H 0.96995 * 119.99927 * 180.02562 * 15 14 12 35 35 H 1.08003 * 119.99913 * 0.02562 * 21 20 10 36 36 H 1.08000 * 120.00298 * 180.27599 * 22 21 20 37 37 H 1.07995 * 120.00273 * 179.83459 * 23 22 21 38 38 H 1.08000 * 119.99865 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.00180 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4764 1.1952 -0.0062 5 6 4.2266 0.0343 -0.0067 6 6 3.5766 -1.1902 -0.0012 7 6 2.1899 -1.2011 0.0057 8 6 1.4373 -2.5067 0.0124 9 8 2.3666 -3.5924 0.0109 10 6 1.7529 -4.8829 0.0176 11 1 0.7956 -4.8273 0.5359 12 6 1.5303 -5.3405 -1.4009 13 1 0.5304 -5.5543 -1.7487 14 6 2.6031 -5.4861 -2.2547 15 7 3.8206 -5.2253 -1.8313 16 14 2.3272 -6.0540 -4.0127 17 1 1.4411 -5.0886 -4.7114 18 1 3.6312 -6.1290 -4.7191 19 1 1.6897 -7.3952 -4.0054 20 6 2.6519 -5.8629 0.7264 21 6 4.0247 -5.7512 0.6094 22 6 4.8494 -6.6475 1.2631 23 6 4.3010 -7.6612 2.0264 24 6 2.9281 -7.7761 2.1392 25 6 2.1034 -6.8770 1.4892 26 1 -0.3634 0.0048 1.0276 27 1 -0.3634 0.8875 -0.5180 28 1 -0.3633 -0.8925 -0.5096 29 1 3.9751 2.1531 -0.0104 30 1 5.3057 0.0805 -0.0122 31 1 4.1368 -2.1135 -0.0010 32 1 0.8066 -2.5672 -0.8745 33 1 0.8147 -2.5626 0.9054 34 1 4.5752 -5.3275 -2.4321 35 1 4.4531 -4.9612 0.0103 36 1 5.9220 -6.5575 1.1752 37 1 4.9452 -8.3631 2.5350 38 1 2.4996 -8.5683 2.7352 39 1 1.0308 -6.9670 1.5770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223348149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:11 Heat of formation + Delta-G solvation = 17.200097 kcal Electronic energy + Delta-G solvation = -21840.500986 eV Core-core repulsion = 18713.169886 eV Total energy + Delta-G solvation = -3127.331100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.93899 -38.28357 -36.43614 -33.36121 -32.72902 -31.98429 -30.37374 -29.64180 -27.62141 -26.74569 -25.68340 -22.98259 -21.89014 -21.46276 -21.07898 -20.14550 -16.93543 -16.41864 -16.00878 -15.74733 -15.18482 -14.74915 -14.57859 -14.44137 -13.91620 -13.60803 -13.23762 -13.21741 -12.63577 -12.56174 -12.26245 -12.22014 -12.08958 -11.95238 -11.55756 -11.44251 -10.99610 -10.87494 -10.69785 -10.31988 -10.19949 -9.88689 -9.29714 -9.24537 -9.13472 -8.78037 -8.53437 -8.08212 -7.76832 -7.46467 -6.00340 -4.33756 1.43838 1.72485 2.45783 2.61316 3.22929 3.27822 3.30387 4.12322 4.29217 4.55279 4.70667 5.01776 5.12066 5.19315 5.35388 5.38004 5.61576 5.76083 5.80169 5.81421 5.90858 5.92235 5.99227 6.04659 6.14396 6.27141 6.32325 6.36985 6.53736 6.64544 6.75686 6.83967 6.91438 7.10120 7.10501 7.28247 7.49953 7.59886 7.81501 7.99929 8.03743 8.27644 8.28796 8.47149 8.87121 9.41978 10.83818 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.005910 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.441979 B = 4736.756655 C = 5537.124865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.118 3.882 3 N -0.492 5.492 4 C 0.084 3.916 5 C -0.184 4.184 6 C -0.042 4.042 7 C -0.119 4.119 8 C 0.113 3.887 9 O -0.367 6.367 10 C 0.247 3.753 11 H 0.018 0.982 12 C -0.545 4.545 13 H 0.060 0.940 14 C 0.086 3.914 15 N -0.847 5.847 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.041 4.041 21 C -0.045 4.045 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.129 4.129 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.151 0.849 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.164 0.836 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 5.458 4.707 7.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.020 4.020 3 N -0.202 5.202 4 C -0.073 4.073 5 C -0.204 4.204 6 C -0.067 4.067 7 C -0.121 4.121 8 C 0.035 3.965 9 O -0.286 6.286 10 C 0.191 3.809 11 H 0.036 0.964 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.120 4.120 15 N -0.482 5.482 16 Si 0.718 3.282 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.042 4.042 21 C -0.063 4.063 22 C -0.173 4.173 23 C -0.164 4.164 24 C -0.168 4.168 25 C -0.148 4.148 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.169 0.831 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.181 0.819 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.710 6.268 4.633 7.826 hybrid contribution 0.296 -1.437 -1.144 1.861 sum -0.415 4.830 3.489 5.973 Atomic orbital electron populations 1.20717 0.89288 1.03390 1.02763 1.20964 0.96715 0.87786 0.96494 1.67455 1.10090 1.29020 1.13600 1.22551 0.89576 0.98126 0.97066 1.22136 1.01191 0.93635 1.03456 1.21660 0.94217 0.98794 0.92079 1.20804 0.95170 0.95576 1.00572 1.20837 0.91553 0.84859 0.99251 1.87962 1.32013 1.13676 1.94972 1.18542 0.88818 0.79644 0.93865 0.96354 1.21391 0.93695 1.47533 0.95588 0.92194 1.24954 0.95000 0.93583 0.98446 1.69783 0.98423 1.45688 1.34317 0.86698 0.77622 0.79334 0.84586 1.20123 1.21060 1.20180 1.19980 0.95069 0.96293 0.92831 1.21846 0.93012 0.99237 0.92252 1.21154 0.98906 0.97428 0.99778 1.20821 0.94802 0.99256 1.01556 1.20701 0.93760 0.99902 1.02441 1.20790 0.98575 0.96519 0.98889 0.90696 0.90866 0.90420 0.83472 0.85300 0.83085 0.92178 0.93860 0.92715 0.81904 0.88080 0.88312 0.88037 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.77 36.00 0.35 -1.03 16 2 C 0.12 1.94 6.78 -82.59 -0.56 1.38 16 3 N -0.49 -8.11 10.27 -9.48 -0.10 -8.21 16 4 C 0.08 1.23 11.18 -17.55 -0.20 1.03 16 5 C -0.18 -2.76 10.11 -39.44 -0.40 -3.16 16 6 C -0.04 -0.75 9.48 -39.28 -0.37 -1.12 16 7 C -0.12 -2.15 5.90 -104.48 -0.62 -2.76 16 8 C 0.11 2.15 4.86 36.01 0.18 2.33 16 9 O -0.37 -8.28 7.09 -35.23 -0.25 -8.53 16 10 C 0.25 5.80 2.59 -29.03 -0.08 5.73 16 11 H 0.02 0.41 7.70 -51.93 -0.40 0.01 16 12 C -0.55 -13.95 8.89 -34.44 -0.31 -14.26 16 13 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 14 C 0.09 2.21 5.24 -17.82 -0.09 2.12 16 15 N -0.85 -21.75 8.50 55.43 0.47 -21.28 16 16 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 20 C -0.04 -0.95 4.80 -104.62 -0.50 -1.46 16 21 C -0.04 -1.03 7.46 -39.59 -0.30 -1.32 16 22 C -0.15 -3.17 10.05 -39.58 -0.40 -3.57 16 23 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 24 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 25 C -0.13 -2.72 9.68 -39.58 -0.38 -3.10 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.99 6.63 -51.93 -0.34 0.64 16 29 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.15 2.91 7.11 -52.49 -0.37 2.54 16 32 H 0.06 1.17 7.48 -51.93 -0.39 0.79 16 33 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 35 H 0.16 4.01 5.50 -52.48 -0.29 3.72 16 36 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -27.71 326.87 -9.58 -37.29 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.14 Total: 6.11 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -4.47 Total: -25.63 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 0.37 Total: -29.49 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.25 Total: -8.53 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.71 -9.58 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223348149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.490 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds