Wall clock time and date at job start Tue Mar 31 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31887 * 119.61460 * 2 1 4 4 C 1.31852 * 121.72547 * 179.70106 * 3 2 1 5 5 C 1.38233 * 120.76085 * 0.59254 * 4 3 2 6 6 C 1.38628 * 119.16099 * 359.45206 * 5 4 3 7 7 C 1.38177 * 119.61735 * 180.02562 * 2 1 3 8 8 C 1.50702 * 120.42010 * 359.97121 * 7 2 1 9 9 O 1.42900 * 109.46951 * 180.02562 * 8 7 2 10 10 C 1.42906 * 114.00024 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.46585 * 30.00026 * 10 9 8 12 12 C 1.50699 * 109.46959 * 270.00497 * 10 9 8 13 13 H 1.08000 * 119.99907 * 324.87141 * 12 10 9 14 14 C 1.37879 * 119.99947 * 144.87099 * 12 10 9 15 15 N 1.31510 * 119.99928 * 5.14780 * 14 12 10 16 16 Si 1.86795 * 120.00128 * 185.14417 * 14 12 10 17 17 H 1.48497 * 109.47381 * 59.99968 * 16 14 12 18 18 H 1.48501 * 109.47386 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47263 * 300.00117 * 16 14 12 20 20 C 1.50692 * 109.47156 * 150.00327 * 10 9 8 21 21 C 1.38243 * 120.00287 * 37.72189 * 20 10 9 22 22 C 1.38226 * 119.99931 * 179.78776 * 21 20 10 23 23 C 1.38237 * 120.00246 * 0.44166 * 22 21 20 24 24 C 1.38228 * 120.00037 * 359.81115 * 23 22 21 25 25 C 1.38234 * 120.00129 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.47398 * 269.97320 * 1 2 3 27 27 H 1.08998 * 109.47784 * 29.97353 * 1 2 3 28 28 H 1.09002 * 109.47000 * 149.97355 * 1 2 3 29 29 H 1.08000 * 119.62030 * 180.28871 * 4 3 2 30 30 H 1.07998 * 120.41880 * 179.72201 * 5 4 3 31 31 H 1.08000 * 120.78991 * 180.28013 * 6 5 4 32 32 H 1.08997 * 109.47257 * 300.02881 * 8 7 2 33 33 H 1.09007 * 109.46636 * 60.02931 * 8 7 2 34 34 H 0.97001 * 120.00593 * 180.02562 * 15 14 12 35 35 H 1.07995 * 119.99416 * 359.97438 * 21 20 10 36 36 H 1.08003 * 119.99841 * 180.27023 * 22 21 20 37 37 H 1.08000 * 119.99999 * 179.83646 * 23 22 21 38 38 H 1.08000 * 120.00262 * 180.02562 * 24 23 22 39 39 H 1.07996 * 120.00843 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4763 1.1952 0.0059 5 6 4.2267 0.0342 0.0000 6 6 3.5766 -1.1902 -0.0007 7 6 2.1899 -1.2012 -0.0005 8 6 1.4372 -2.5068 -0.0005 9 8 2.3666 -3.5924 -0.0005 10 6 1.7529 -4.8829 -0.0010 11 1 0.7933 -4.8286 -0.5151 12 6 1.5367 -5.3369 1.4196 13 1 2.2548 -5.0794 2.1840 14 6 0.4219 -6.0809 1.7435 15 7 -0.3995 -6.4806 0.7975 16 14 0.0786 -6.5214 3.5260 17 1 -0.0766 -5.2776 4.3222 18 1 -1.1705 -7.3204 3.6067 19 1 1.2103 -7.3169 4.0662 20 6 2.6486 -5.8648 -0.7113 21 6 4.0203 -5.7837 -0.5602 22 6 4.8416 -6.6871 -1.2083 23 6 4.2919 -7.6660 -2.0148 24 6 2.9205 -7.7438 -2.1701 25 6 2.0989 -6.8432 -1.5185 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 3.9752 2.1531 0.0104 30 1 5.3056 0.0805 0.0003 31 1 4.1368 -2.1136 -0.0007 32 1 0.8106 -2.5650 0.8895 33 1 0.8106 -2.5650 -0.8905 34 1 -1.1839 -7.0037 1.0252 35 1 4.4500 -5.0164 0.0666 36 1 5.9131 -6.6264 -1.0867 37 1 4.9337 -8.3701 -2.5232 38 1 2.4910 -8.5089 -2.7999 39 1 1.0274 -6.9042 -1.6394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223348150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:13 Heat of formation + Delta-G solvation = 3.801494 kcal Electronic energy + Delta-G solvation = -21463.203319 eV Core-core repulsion = 18335.291213 eV Total energy + Delta-G solvation = -3127.912107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07051 -38.45753 -36.65610 -33.40198 -32.85762 -32.22255 -30.54619 -30.00342 -27.71169 -26.68215 -25.78458 -23.16778 -22.04102 -21.66251 -21.22357 -20.17432 -16.90527 -16.62930 -16.27789 -15.90328 -15.16488 -14.92167 -14.80365 -14.40675 -14.14154 -13.68366 -13.46627 -13.38522 -12.78053 -12.54156 -12.42705 -12.31736 -12.25919 -12.00281 -11.84301 -11.39250 -11.21082 -11.02061 -10.63487 -10.37282 -10.24785 -10.20969 -9.52232 -9.40212 -9.25904 -8.75307 -8.69293 -8.30032 -8.06080 -7.69348 -6.24887 -4.32503 1.31739 1.57453 2.27603 2.28973 3.21575 3.26000 3.29560 3.99875 4.23979 4.42995 4.56101 4.79255 5.02368 5.09748 5.19228 5.24067 5.48199 5.64248 5.72365 5.74494 5.74846 5.81642 5.83655 5.94205 6.04768 6.21050 6.26535 6.33423 6.41706 6.48166 6.51660 6.64033 6.86148 6.96037 6.96737 7.07840 7.30325 7.42477 7.65471 7.68444 7.90265 8.04457 8.18131 8.23750 8.87655 9.35536 10.79536 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.005858 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.981324 B = 4778.693267 C = 6234.012310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.123 3.877 3 N -0.489 5.489 4 C 0.086 3.914 5 C -0.184 4.184 6 C -0.050 4.050 7 C -0.122 4.122 8 C 0.119 3.881 9 O -0.398 6.398 10 C 0.236 3.764 11 H 0.056 0.944 12 C -0.527 4.527 13 H 0.064 0.936 14 C 0.071 3.929 15 N -0.883 5.883 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.028 4.028 21 C -0.110 4.110 22 C -0.134 4.134 23 C -0.151 4.151 24 C -0.131 4.131 25 C -0.106 4.106 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.267 0.733 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 7.022 -3.758 9.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.014 4.014 3 N -0.199 5.199 4 C -0.071 4.071 5 C -0.204 4.204 6 C -0.075 4.075 7 C -0.124 4.124 8 C 0.041 3.959 9 O -0.318 6.318 10 C 0.180 3.820 11 H 0.074 0.926 12 C -0.565 4.565 13 H 0.082 0.918 14 C -0.133 4.133 15 N -0.520 5.520 16 Si 0.724 3.276 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.029 4.029 21 C -0.128 4.128 22 C -0.152 4.152 23 C -0.169 4.169 24 C -0.149 4.149 25 C -0.124 4.124 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.167 0.833 30 H 0.148 0.852 31 H 0.163 0.837 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.393 7.715 -3.794 9.655 hybrid contribution 0.154 -1.337 1.083 1.727 sum 4.547 6.378 -2.711 8.289 Atomic orbital electron populations 1.20751 0.89010 1.03395 1.03224 1.20999 0.96878 0.87629 0.95940 1.67481 1.10078 1.28992 1.13316 1.22588 0.89573 0.98182 0.96787 1.22121 1.01186 0.93596 1.03472 1.21546 0.94131 0.98577 0.93267 1.20846 0.95109 0.95751 1.00668 1.20874 0.91010 0.83560 1.00449 1.87636 1.33805 1.15004 1.95382 1.18828 0.90744 0.77317 0.95070 0.92567 1.21401 1.07318 1.34402 0.93368 0.91792 1.24987 0.95509 0.95016 0.97835 1.69875 1.13977 1.35801 1.32361 0.86561 0.77771 0.78676 0.84563 1.19954 1.21046 1.19989 1.20338 0.93847 0.96737 0.91943 1.20903 0.93614 0.98712 0.99585 1.20968 0.98728 0.96529 0.99011 1.20834 0.95026 0.99691 1.01356 1.20977 0.93687 0.99354 1.00856 1.21047 1.00119 0.95133 0.96105 0.90297 0.90763 0.90360 0.83311 0.85215 0.83709 0.91416 0.92904 0.92313 0.86706 0.87554 0.87672 0.87403 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.77 36.01 0.35 -1.05 16 2 C 0.12 1.95 6.78 -82.59 -0.56 1.39 16 3 N -0.49 -7.66 10.27 -9.47 -0.10 -7.76 16 4 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 5 C -0.18 -2.46 10.11 -39.44 -0.40 -2.86 16 6 C -0.05 -0.79 9.48 -39.28 -0.37 -1.16 16 7 C -0.12 -2.07 5.90 -104.48 -0.62 -2.69 16 8 C 0.12 2.23 4.85 36.01 0.17 2.41 16 9 O -0.40 -8.58 7.77 -35.23 -0.27 -8.85 16 10 C 0.24 5.63 2.40 -29.04 -0.07 5.56 16 11 H 0.06 1.44 6.91 -51.93 -0.36 1.08 16 12 C -0.53 -13.76 8.62 -34.44 -0.30 -14.06 16 13 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 14 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 15 N -0.88 -23.40 12.84 55.43 0.71 -22.69 16 16 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 20 C -0.03 -0.63 4.97 -104.62 -0.52 -1.15 16 21 C -0.11 -2.27 9.36 -39.58 -0.37 -2.65 16 22 C -0.13 -2.43 10.05 -39.59 -0.40 -2.83 16 23 C -0.15 -2.64 10.05 -39.59 -0.40 -3.04 16 24 C -0.13 -2.45 10.05 -39.59 -0.40 -2.85 16 25 C -0.11 -2.29 9.67 -39.58 -0.38 -2.67 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.99 6.63 -51.93 -0.34 0.65 16 29 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.15 2.37 7.11 -52.49 -0.37 1.99 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.05 0.95 7.44 -51.93 -0.39 0.57 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.11 2.32 7.71 -52.49 -0.40 1.91 16 36 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.12 2.80 8.05 -52.49 -0.42 2.38 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -28.22 335.12 -9.40 -37.61 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.22 Total: 6.12 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -4.55 Total: -24.96 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.61 Total: -30.45 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.27 Total: -8.85 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.22 -9.40 -37.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223348150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.416 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds