Wall clock time and date at job start Tue Mar 31 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38675 * 120.78871 * 2 1 4 4 C 1.38188 * 119.16124 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.76082 * 359.74628 * 4 3 2 6 6 C 1.31850 * 121.72937 * 0.51767 * 5 4 3 7 7 C 1.50706 * 119.61778 * 179.75601 * 6 5 4 8 8 O 1.42898 * 109.47034 * 179.72914 * 7 6 5 9 9 C 1.42899 * 114.00017 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.47254 * 330.00284 * 9 8 7 11 11 C 1.50707 * 109.46871 * 89.99655 * 9 8 7 12 12 H 1.07999 * 119.99514 * 32.31339 * 11 9 8 13 13 C 1.37875 * 120.00090 * 212.30365 * 11 9 8 14 14 N 1.31516 * 119.99712 * 3.02038 * 13 11 9 15 15 Si 1.86800 * 119.99883 * 183.28844 * 13 11 9 16 16 H 1.48504 * 109.46635 * 179.73100 * 15 13 11 17 17 H 1.48501 * 109.47186 * 299.72940 * 15 13 11 18 18 H 1.48500 * 109.47104 * 59.73100 * 15 13 11 19 19 C 1.50699 * 109.47313 * 209.99907 * 9 8 7 20 20 C 1.38231 * 119.99861 * 322.40290 * 19 9 8 21 21 C 1.38241 * 119.99913 * 179.78659 * 20 19 9 22 22 C 1.38236 * 119.99385 * 0.44193 * 21 20 19 23 23 C 1.38236 * 120.00558 * 359.80728 * 22 21 20 24 24 C 1.38233 * 119.99607 * 142.67118 * 19 9 8 25 25 C 1.38222 * 120.76377 * 359.48194 * 6 5 4 26 26 H 1.09006 * 109.47146 * 269.98109 * 1 2 3 27 27 H 1.08997 * 109.47058 * 29.97679 * 1 2 3 28 28 H 1.08993 * 109.47051 * 149.97781 * 1 2 3 29 29 H 1.07998 * 120.42004 * 0.02562 * 3 2 1 30 30 H 1.07993 * 119.61400 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.47247 * 59.72495 * 7 6 5 32 32 H 1.09003 * 109.46908 * 299.72670 * 7 6 5 33 33 H 0.96999 * 120.00528 * 355.08060 * 14 13 11 34 34 H 1.08003 * 120.00356 * 359.97438 * 20 19 9 35 35 H 1.07991 * 120.00409 * 180.27113 * 21 20 19 36 36 H 1.08007 * 119.99554 * 179.83165 * 22 21 20 37 37 H 1.07999 * 119.99986 * 180.02562 * 23 22 21 38 38 H 1.07999 * 120.00512 * 359.97438 * 24 19 9 39 39 H 1.08001 * 120.41931 * 180.26961 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5982 1.1521 -0.0005 5 7 4.2403 0.0001 0.0040 6 6 3.5983 -1.1516 -0.0010 7 6 4.3801 -2.4401 -0.0011 8 8 3.4753 -3.5461 -0.0005 9 6 4.1177 -4.8226 -0.0011 10 1 5.0758 -4.7469 -0.5156 11 6 4.3447 -5.2713 1.4196 12 1 3.6445 -4.9912 2.1926 13 6 5.4459 -6.0397 1.7323 14 7 6.3297 -6.3311 0.8029 15 14 5.6789 -6.6729 3.4742 16 1 6.9278 -7.4730 3.5470 17 1 5.7718 -5.5238 4.4103 18 1 4.5223 -7.5252 3.8498 19 6 3.2440 -5.8244 -0.7110 20 6 1.8708 -5.7724 -0.5613 21 6 1.0690 -6.6887 -1.2160 22 6 1.6411 -7.6626 -2.0130 23 6 3.0147 -7.7177 -2.1585 24 6 3.8162 -6.7987 -1.5073 25 6 2.2166 -1.1909 -0.0005 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5141 29 1 1.6967 2.1378 0.0004 30 1 4.1583 2.0754 -0.0010 31 1 5.0082 -2.4840 0.8886 32 1 5.0075 -2.4843 -0.8913 33 1 6.1714 -6.0668 -0.1169 34 1 1.4240 -5.0141 0.0646 35 1 -0.0041 -6.6455 -1.1026 36 1 1.0149 -8.3801 -2.5223 37 1 3.4616 -8.4783 -2.7815 38 1 4.8893 -6.8418 -1.6211 39 1 1.6965 -2.1374 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223503522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:03 Heat of formation + Delta-G solvation = 3.300814 kcal Electronic energy + Delta-G solvation = -21390.100785 eV Core-core repulsion = 18262.166967 eV Total energy + Delta-G solvation = -3127.933818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.07311 -38.62982 -36.75118 -33.93138 -33.35847 -31.59019 -30.39660 -30.12742 -27.76299 -26.67922 -25.68369 -23.27421 -22.64575 -21.75030 -20.81291 -20.39841 -17.29916 -16.51357 -16.42553 -15.84740 -15.43609 -15.02635 -14.73412 -14.50405 -13.89854 -13.79355 -13.69672 -13.53018 -13.03652 -12.68346 -12.64278 -12.49786 -12.34540 -12.16372 -11.93165 -11.54135 -11.15079 -10.89581 -10.62934 -10.37011 -10.21715 -9.83264 -9.78082 -9.31514 -9.20960 -8.81380 -8.58935 -8.36475 -8.18495 -7.70780 -6.53747 -4.29939 1.31658 1.44059 2.14157 2.17109 3.37651 3.39089 3.57440 3.96008 4.07001 4.39021 4.61157 4.76550 4.84420 5.01002 5.19015 5.24404 5.45972 5.47922 5.50600 5.55283 5.61724 5.70786 5.76004 5.88460 6.01379 6.04542 6.11591 6.21324 6.29305 6.34159 6.39140 6.46894 6.65933 6.81916 6.82368 6.92739 7.17605 7.27752 7.48128 7.74739 7.85793 7.98770 8.21754 8.47477 8.63655 9.42069 10.80419 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.005594 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.153566 B = 5004.212070 C = 6363.265389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.189 4.189 4 C 0.100 3.900 5 N -0.490 5.490 6 C 0.143 3.857 7 C 0.123 3.877 8 O -0.392 6.392 9 C 0.230 3.770 10 H 0.037 0.963 11 C -0.603 4.603 12 H 0.061 0.939 13 C 0.028 3.972 14 N -0.898 5.898 15 Si 1.068 2.932 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.285 1.285 19 C -0.034 4.034 20 C -0.105 4.105 21 C -0.130 4.130 22 C -0.149 4.149 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.146 4.146 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.129 0.871 30 H 0.153 0.847 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.269 0.731 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.345 8.585 -3.706 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.057 4.057 3 C -0.209 4.209 4 C -0.057 4.057 5 N -0.201 5.201 6 C 0.007 3.993 7 C 0.046 3.954 8 O -0.312 6.312 9 C 0.174 3.826 10 H 0.054 0.946 11 C -0.641 4.641 12 H 0.079 0.921 13 C -0.177 4.177 14 N -0.534 5.534 15 Si 0.895 3.105 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.035 4.035 20 C -0.123 4.123 21 C -0.148 4.148 22 C -0.167 4.167 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.166 4.166 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.147 0.853 30 H 0.170 0.830 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.583 7.738 -2.729 11.173 hybrid contribution -1.715 0.738 -0.890 2.068 sum -9.298 8.476 -3.619 13.092 Atomic orbital electron populations 1.20797 0.90513 1.03039 1.02705 1.20369 0.96671 0.93083 0.95626 1.21933 0.95680 0.98358 1.04925 1.22598 0.91684 0.95706 0.95756 1.67273 1.41570 0.97972 1.13315 1.21189 0.91596 0.93191 0.93356 1.20675 0.90781 0.82521 1.01441 1.87612 1.33763 1.14301 1.95496 1.18869 0.89805 0.78265 0.95645 0.94573 1.22262 1.12379 1.36518 0.92895 0.92097 1.25910 0.91777 0.93963 1.06086 1.70868 1.34907 1.44679 1.02939 0.83547 0.76445 0.76645 0.73816 1.20539 1.21191 1.21146 1.20384 0.94296 0.96818 0.91973 1.20865 0.93481 0.98646 0.99320 1.21007 0.98882 0.96246 0.98681 1.20863 0.94873 0.99654 1.01352 1.20952 0.93798 0.98977 1.00477 1.20959 0.99711 0.95833 0.97255 1.21922 0.95059 0.99034 1.00584 0.90698 0.91398 0.90944 0.85343 0.83018 0.90700 0.92382 0.91865 0.86516 0.87289 0.87383 0.87128 0.86536 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.06 36.01 0.36 -0.78 16 2 C -0.05 -0.67 5.92 -104.32 -0.62 -1.29 16 3 C -0.19 -2.33 9.82 -39.44 -0.39 -2.72 16 4 C 0.10 1.38 11.18 -17.55 -0.20 1.18 16 5 N -0.49 -8.55 10.27 -9.47 -0.10 -8.64 16 6 C 0.14 2.64 6.78 -82.59 -0.56 2.08 16 7 C 0.12 2.53 6.28 36.01 0.23 2.76 16 8 O -0.39 -8.75 7.66 -35.23 -0.27 -9.02 16 9 C 0.23 5.62 2.22 -29.03 -0.06 5.56 16 10 H 0.04 0.94 5.89 -51.93 -0.31 0.63 16 11 C -0.60 -16.26 8.62 -34.44 -0.30 -16.55 16 12 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 13 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16 14 N -0.90 -25.45 13.62 55.43 0.75 -24.70 16 15 Si 1.07 24.56 29.90 -169.99 -5.08 19.48 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.03 -0.78 4.97 -104.63 -0.52 -1.29 16 20 C -0.10 -2.17 9.35 -39.58 -0.37 -2.54 16 21 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 22 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 23 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 24 C -0.12 -2.57 9.60 -39.58 -0.38 -2.95 16 25 C -0.15 -2.43 9.12 -39.44 -0.36 -2.79 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 33 H 0.27 7.48 5.43 -40.82 -0.22 7.26 16 34 H 0.12 2.36 7.71 -52.48 -0.40 1.96 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.12 2.56 7.04 -52.49 -0.37 2.19 16 39 H 0.15 2.49 7.00 -52.49 -0.37 2.12 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -29.99 334.04 -9.21 -39.20 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.10 Total: 5.69 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -4.45 Total: -27.05 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.66 Total: -33.34 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.27 Total: -9.02 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.99 -9.21 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223503522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.506 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds