Wall clock time and date at job start Tue Mar 31 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38679 * 120.78889 * 2 1 4 4 C 1.38180 * 119.15975 * 180.27994 * 3 2 1 5 5 N 1.31890 * 120.76812 * 359.69795 * 4 3 2 6 6 C 1.31855 * 121.72451 * 0.02660 * 5 4 3 7 7 C 1.50697 * 119.61648 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46789 * 179.97438 * 7 6 5 9 9 C 1.42902 * 113.99662 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47358 * 30.00649 * 9 8 7 11 11 C 1.50697 * 109.47565 * 269.99913 * 9 8 7 12 12 H 1.08004 * 119.99848 * 305.05760 * 11 9 8 13 13 C 1.37876 * 120.00273 * 125.05225 * 11 9 8 14 14 N 1.31508 * 120.00267 * 173.07816 * 13 11 9 15 15 Si 1.86796 * 119.99686 * 353.07761 * 13 11 9 16 16 H 1.48499 * 109.47332 * 85.11557 * 15 13 11 17 17 H 1.48502 * 109.47168 * 205.11559 * 15 13 11 18 18 H 1.48496 * 109.47428 * 325.11545 * 15 13 11 19 19 C 1.50706 * 109.46958 * 150.00176 * 9 8 7 20 20 C 1.38228 * 120.00042 * 35.40213 * 19 9 8 21 21 C 1.38235 * 120.00207 * 179.80876 * 20 19 9 22 22 C 1.38238 * 119.99858 * 0.40646 * 21 20 19 23 23 C 1.38243 * 119.99641 * 359.84624 * 22 21 20 24 24 C 1.38231 * 120.00229 * 359.96349 * 23 22 21 25 25 C 1.38228 * 120.76174 * 359.97412 * 6 5 4 26 26 H 1.09004 * 109.46988 * 270.29037 * 1 2 3 27 27 H 1.08999 * 109.47551 * 30.29007 * 1 2 3 28 28 H 1.08993 * 109.47581 * 150.29526 * 1 2 3 29 29 H 1.07998 * 120.42086 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.62020 * 179.72595 * 4 3 2 31 31 H 1.08997 * 109.47292 * 299.97511 * 7 6 5 32 32 H 1.09001 * 109.47367 * 59.97894 * 7 6 5 33 33 H 0.97001 * 120.00326 * 179.97438 * 14 13 11 34 34 H 1.07999 * 120.00021 * 0.02562 * 20 19 9 35 35 H 1.08000 * 120.00387 * 180.23299 * 21 20 19 36 36 H 1.07995 * 120.00527 * 179.83589 * 22 21 20 37 37 H 1.07998 * 119.99304 * 179.97438 * 23 22 21 38 38 H 1.07996 * 119.99969 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.41518 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1521 -0.0059 5 7 4.2403 0.0001 -0.0055 6 6 3.5983 -1.1516 0.0000 7 6 4.3800 -2.4400 -0.0004 8 8 3.4752 -3.5460 0.0067 9 6 4.1177 -4.8225 0.0063 10 1 5.0786 -4.7458 0.5152 11 6 4.3364 -5.2745 -1.4145 12 1 3.5022 -5.3287 -2.0984 13 6 5.6014 -5.6188 -1.8415 14 7 5.7726 -6.1416 -3.0360 15 14 7.0719 -5.3427 -0.7233 16 1 7.2225 -6.5023 0.1920 17 1 8.2996 -5.1990 -1.5463 18 1 6.8628 -4.1071 0.0735 19 6 3.2480 -5.8228 0.7234 20 6 1.8721 -5.7434 0.6180 21 6 1.0744 -6.6633 1.2725 22 6 1.6526 -7.6576 2.0393 23 6 3.0285 -7.7339 2.1489 24 6 3.8262 -6.8163 1.4912 25 6 2.2166 -1.1908 0.0060 26 1 -0.3633 0.0052 1.0277 27 1 -0.3634 0.8873 -0.5183 28 1 -0.3634 -0.8925 -0.5092 29 1 1.6967 2.1378 0.0004 30 1 4.1583 2.0754 -0.0104 31 1 5.0036 -2.4864 -0.8932 32 1 5.0119 -2.4819 0.8867 33 1 6.6626 -6.3834 -3.3366 34 1 1.4202 -4.9647 0.0214 35 1 -0.0005 -6.6035 1.1871 36 1 1.0294 -8.3747 2.5529 37 1 3.4802 -8.5105 2.7483 38 1 4.9011 -6.8757 1.5772 39 1 1.6965 -2.1373 0.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223503523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:05 Heat of formation + Delta-G solvation = 8.802299 kcal Electronic energy + Delta-G solvation = -21422.591880 eV Core-core repulsion = 18294.896624 eV Total energy + Delta-G solvation = -3127.695256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.04848 -38.69238 -36.77771 -33.88371 -33.00114 -31.77069 -30.67032 -30.21609 -27.75623 -27.21511 -26.09306 -23.11413 -22.51971 -21.88024 -20.78626 -20.13988 -17.27465 -16.56304 -16.47783 -15.90629 -15.37547 -14.99398 -14.95612 -14.57200 -14.30108 -13.73724 -13.70414 -13.43409 -12.80364 -12.71820 -12.66678 -12.64851 -12.45500 -12.25433 -12.04008 -11.57415 -11.25567 -11.06032 -10.89876 -10.60486 -10.41381 -9.86581 -9.55401 -9.29968 -9.18243 -8.91473 -8.76182 -8.43546 -8.26811 -7.85289 -6.29565 -4.32170 1.34336 1.46900 2.04514 2.08545 3.13145 3.19967 3.23622 3.98414 4.05760 4.20020 4.49556 4.79314 4.87160 4.97383 5.09818 5.26498 5.45096 5.48987 5.49779 5.53001 5.54699 5.67405 5.74434 5.88971 5.94911 6.02762 6.08698 6.17471 6.22191 6.27184 6.38472 6.42665 6.55813 6.67894 6.73681 6.95365 7.09094 7.17978 7.33901 7.40630 7.68411 8.05653 8.24141 8.38343 8.83599 9.31265 10.82633 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.006129 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.003275 B = 4566.984015 C = 6090.310256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.189 4.189 4 C 0.100 3.900 5 N -0.491 5.491 6 C 0.144 3.856 7 C 0.120 3.880 8 O -0.392 6.392 9 C 0.214 3.786 10 H 0.035 0.965 11 C -0.522 4.522 12 H 0.083 0.917 13 C 0.081 3.919 14 N -0.879 5.879 15 Si 0.863 3.137 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.262 1.262 19 C -0.032 4.032 20 C -0.102 4.102 21 C -0.126 4.126 22 C -0.146 4.146 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.145 4.145 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.152 0.848 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.269 0.731 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 8.351 8.832 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.209 4.209 4 C -0.058 4.058 5 N -0.202 5.202 6 C 0.007 3.993 7 C 0.042 3.958 8 O -0.312 6.312 9 C 0.159 3.841 10 H 0.053 0.947 11 C -0.560 4.560 12 H 0.101 0.899 13 C -0.124 4.124 14 N -0.515 5.515 15 Si 0.689 3.311 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.032 4.032 20 C -0.120 4.120 21 C -0.144 4.144 22 C -0.164 4.164 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.165 4.165 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.169 0.831 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.886 8.267 8.679 13.823 hybrid contribution 0.313 0.004 0.311 0.441 sum -6.573 8.271 8.989 13.872 Atomic orbital electron populations 1.20795 0.90503 1.03168 1.02585 1.20369 0.96678 0.93082 0.95622 1.21927 0.95664 0.98368 1.04910 1.22585 0.91695 0.95677 0.95814 1.67273 1.41609 0.98003 1.13358 1.21170 0.91630 0.93114 0.93392 1.20702 0.90995 0.82756 1.01319 1.87706 1.33988 1.14091 1.95407 1.19142 0.90058 0.79333 0.95593 0.94701 1.21257 0.95817 1.44687 0.94195 0.89902 1.25092 0.98584 0.93728 0.94983 1.69882 1.23268 1.39951 1.18436 0.87075 0.83002 0.79691 0.81292 1.19540 1.20711 1.18667 1.20142 0.94358 0.96234 0.92493 1.20912 0.93318 0.98683 0.99074 1.21050 0.99068 0.95849 0.98451 1.20894 0.94800 0.99430 1.01309 1.20928 0.93850 0.98886 1.00382 1.20873 0.99452 0.96019 0.97974 1.21929 0.95008 0.99083 1.00434 0.90797 0.91392 0.90840 0.85369 0.83068 0.90698 0.92495 0.92116 0.86063 0.87052 0.87211 0.86989 0.86986 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.06 36.00 0.36 -0.77 16 2 C -0.05 -0.67 5.92 -104.32 -0.62 -1.29 16 3 C -0.19 -2.33 9.82 -39.44 -0.39 -2.72 16 4 C 0.10 1.38 11.18 -17.55 -0.20 1.18 16 5 N -0.49 -8.61 10.27 -9.47 -0.10 -8.70 16 6 C 0.14 2.65 6.78 -82.59 -0.56 2.09 16 7 C 0.12 2.45 6.28 36.00 0.23 2.67 16 8 O -0.39 -8.54 7.59 -35.23 -0.27 -8.81 16 9 C 0.21 5.00 2.30 -29.03 -0.07 4.94 16 10 H 0.04 0.82 4.23 -51.93 -0.22 0.60 16 11 C -0.52 -14.24 9.16 -34.44 -0.32 -14.56 16 12 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 13 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 14 N -0.88 -25.87 13.96 55.43 0.77 -25.09 16 15 Si 0.86 20.38 27.04 -169.99 -4.60 15.78 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.26 -5.88 6.66 56.52 0.38 -5.50 16 19 C -0.03 -0.68 4.98 -104.62 -0.52 -1.20 16 20 C -0.10 -1.99 9.35 -39.59 -0.37 -2.36 16 21 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 22 C -0.15 -2.34 10.05 -39.58 -0.40 -2.74 16 23 C -0.12 -2.09 10.05 -39.58 -0.40 -2.48 16 24 C -0.12 -2.48 9.68 -39.58 -0.38 -2.87 16 25 C -0.14 -2.39 9.12 -39.44 -0.36 -2.75 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 32 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.12 2.33 7.64 -52.49 -0.40 1.93 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.15 2.46 7.00 -52.49 -0.37 2.09 16 LS Contribution 334.14 15.07 5.04 5.04 Total: -1.00 -30.36 334.14 -8.85 -39.21 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.21 Total: 5.82 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -4.48 Total: -23.24 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.68 Total: -33.80 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.27 Total: -8.81 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.60 Total: 15.78 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.36 -8.85 -39.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223503523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.011 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds