Wall clock time and date at job start Tue Mar 31 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.78718 * 2 1 4 4 C 1.38180 * 119.16093 * 179.97438 * 3 2 1 5 5 N 1.31891 * 120.76782 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72178 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76588 * 359.73182 * 6 5 4 8 8 C 1.50695 * 120.42362 * 180.26609 * 7 6 5 9 9 O 1.42903 * 109.46791 * 0.27801 * 8 7 6 10 10 C 1.42906 * 114.00031 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.46712 * 330.00256 * 10 9 8 12 12 C 1.50699 * 109.46906 * 89.99700 * 10 9 8 13 13 H 1.08003 * 120.00064 * 240.00458 * 12 10 9 14 14 C 1.37874 * 120.00211 * 59.99995 * 12 10 9 15 15 N 1.31518 * 120.00004 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00102 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47191 * 60.00266 * 16 14 12 18 18 H 1.48499 * 109.47263 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47216 * 300.00280 * 16 14 12 20 20 C 1.50695 * 109.47091 * 209.99454 * 10 9 8 21 21 C 1.38231 * 120.00427 * 324.73021 * 20 10 9 22 22 C 1.38229 * 120.00222 * 179.78785 * 21 20 10 23 23 C 1.38236 * 119.99817 * 0.43577 * 22 21 20 24 24 C 1.38233 * 120.00069 * 359.81622 * 23 22 21 25 25 C 1.38230 * 120.00023 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47152 * 90.00212 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00313 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00294 * 1 2 3 29 29 H 1.07995 * 120.42093 * 359.95305 * 3 2 1 30 30 H 1.08001 * 119.62114 * 179.97438 * 4 3 2 31 31 H 1.07996 * 119.61320 * 179.97438 * 6 5 4 32 32 H 1.09007 * 109.47045 * 120.27236 * 8 7 6 33 33 H 1.08998 * 109.47579 * 240.27863 * 8 7 6 34 34 H 0.97001 * 120.00143 * 179.97438 * 15 14 12 35 35 H 1.08005 * 119.99403 * 359.97438 * 21 20 10 36 36 H 1.08006 * 120.00497 * 180.27439 * 22 21 20 37 37 H 1.08001 * 120.00064 * 179.83647 * 23 22 21 38 38 H 1.08007 * 119.99861 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00422 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1516 0.0005 7 6 2.2167 -1.1909 0.0061 8 6 1.4909 -2.5116 0.0121 9 8 2.4422 -3.5779 0.0174 10 6 1.8550 -4.8807 0.0239 11 1 0.8943 -4.8436 0.5376 12 6 1.6485 -5.3457 -1.3946 13 1 0.6549 -5.5806 -1.7467 14 6 2.7280 -5.4711 -2.2431 15 7 3.9381 -5.1855 -1.8143 16 14 2.4721 -6.0482 -4.0012 17 1 1.5698 -5.1027 -4.7061 18 1 3.7809 -6.0991 -4.7009 19 1 1.8622 -7.4022 -3.9939 20 6 2.7705 -5.8407 0.7389 21 6 4.1412 -5.7011 0.6282 22 6 4.9809 -6.5790 1.2877 23 6 4.4498 -7.6021 2.0506 24 6 3.0790 -7.7449 2.1572 25 6 2.2393 -6.8643 1.5012 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6967 2.1377 -0.0008 30 1 4.1583 2.0754 0.0001 31 1 4.1586 -2.0749 0.0001 32 1 0.8653 -2.5783 0.9023 33 1 0.8658 -2.5868 -0.8777 34 1 4.6976 -5.2741 -2.4111 35 1 4.5561 -4.9041 0.0288 36 1 6.0520 -6.4673 1.2048 37 1 5.1058 -8.2897 2.5638 38 1 2.6640 -8.5445 2.7530 39 1 1.1683 -6.9761 1.5841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223542226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:07 Heat of formation + Delta-G solvation = 16.568774 kcal Electronic energy + Delta-G solvation = -21835.029628 eV Core-core repulsion = 18707.671152 eV Total energy + Delta-G solvation = -3127.358476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.91491 -38.25572 -36.41517 -33.94238 -32.90517 -31.29751 -30.22851 -29.59733 -27.75696 -26.75869 -25.65836 -22.97444 -22.02974 -21.40263 -20.99436 -20.10455 -16.93327 -16.26765 -16.12496 -15.68551 -15.23029 -14.77673 -14.51429 -14.46177 -13.94858 -13.48977 -13.37378 -13.20298 -12.64072 -12.54787 -12.48256 -12.39825 -12.15406 -12.01676 -11.51420 -11.19872 -11.00239 -10.86811 -10.80680 -10.35504 -10.16994 -9.84297 -9.31899 -9.12738 -8.96826 -8.76532 -8.59184 -8.08896 -7.74021 -7.43645 -5.97451 -4.31462 1.52183 1.58586 2.48839 2.64378 3.24528 3.30103 3.31829 4.17979 4.31309 4.62620 4.86346 4.93831 5.04898 5.08849 5.22125 5.38288 5.57329 5.62664 5.68749 5.83029 5.87310 5.95869 6.01194 6.05288 6.11721 6.21823 6.35187 6.38257 6.43740 6.58834 6.68739 6.85504 6.92262 7.12835 7.17456 7.31639 7.52702 7.62583 7.84256 8.02300 8.06295 8.31241 8.38092 8.51264 8.89079 9.44327 10.86595 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.005931 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.533215 B = 4720.092262 C = 5515.527748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.050 4.050 3 C -0.183 4.183 4 C 0.083 3.917 5 N -0.494 5.494 6 C 0.132 3.868 7 C -0.123 4.123 8 C 0.115 3.885 9 O -0.367 6.367 10 C 0.248 3.752 11 H 0.018 0.982 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.086 3.914 15 N -0.845 5.845 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.277 1.277 20 C -0.041 4.041 21 C -0.044 4.044 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.130 4.130 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.127 0.873 30 H 0.147 0.853 31 H 0.174 0.826 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.263 0.737 35 H 0.165 0.835 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 7.102 4.659 9.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.203 4.203 4 C -0.073 4.073 5 N -0.203 5.203 6 C -0.024 4.024 7 C -0.125 4.125 8 C 0.037 3.963 9 O -0.286 6.286 10 C 0.192 3.808 11 H 0.036 0.964 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.120 4.120 15 N -0.480 5.480 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.202 1.202 20 C -0.042 4.042 21 C -0.063 4.063 22 C -0.172 4.172 23 C -0.164 4.164 24 C -0.168 4.168 25 C -0.148 4.148 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.145 0.855 30 H 0.164 0.836 31 H 0.191 0.809 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.182 0.818 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.371 7.143 4.586 8.813 hybrid contribution -1.290 -0.597 -1.160 1.835 sum -3.661 6.546 3.427 8.246 Atomic orbital electron populations 1.20811 0.90699 1.02987 1.02783 1.20068 0.96487 0.92459 0.96798 1.21841 0.95655 0.97985 1.04827 1.22650 0.91675 0.96382 0.96608 1.67787 1.41341 0.98535 1.12595 1.22931 0.91702 0.96103 0.91666 1.20878 0.95862 0.95024 1.00723 1.20796 0.91465 0.84921 0.99160 1.87958 1.31699 1.14014 1.94960 1.18536 0.88948 0.79425 0.93857 0.96409 1.21372 0.93903 1.47386 0.95680 0.92244 1.24958 0.95017 0.93605 0.98403 1.69781 0.98525 1.45284 1.34416 0.86701 0.77592 0.79302 0.84650 1.20185 1.21026 1.20216 1.19972 0.95169 0.96205 0.92866 1.21866 0.92821 0.99411 0.92203 1.21163 0.98971 0.97376 0.99685 1.20821 0.94848 0.99207 1.01552 1.20694 0.93712 0.99994 1.02447 1.20778 0.98512 0.96601 0.98909 0.90603 0.91470 0.90876 0.85509 0.83570 0.80920 0.93973 0.92311 0.92609 0.81816 0.88022 0.88322 0.88070 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.68 36.01 0.35 -0.99 16 2 C -0.05 -0.74 5.92 -104.31 -0.62 -1.36 16 3 C -0.18 -2.46 9.82 -39.44 -0.39 -2.85 16 4 C 0.08 1.23 11.18 -17.55 -0.20 1.03 16 5 N -0.49 -8.96 10.36 -13.25 -0.14 -9.09 16 6 C 0.13 2.55 10.54 -17.55 -0.18 2.37 16 7 C -0.12 -2.20 5.90 -104.48 -0.62 -2.82 16 8 C 0.11 2.18 4.93 36.00 0.18 2.36 16 9 O -0.37 -8.34 7.05 -35.23 -0.25 -8.59 16 10 C 0.25 5.86 2.59 -29.04 -0.08 5.78 16 11 H 0.02 0.40 7.70 -51.93 -0.40 0.00 16 12 C -0.55 -14.05 8.89 -34.44 -0.31 -14.36 16 13 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 14 C 0.09 2.24 5.24 -17.82 -0.09 2.14 16 15 N -0.85 -21.99 8.50 55.43 0.47 -21.52 16 16 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.04 -0.97 4.80 -104.63 -0.50 -1.47 16 21 C -0.04 -1.03 7.46 -39.59 -0.30 -1.33 16 22 C -0.15 -3.21 10.05 -39.59 -0.40 -3.61 16 23 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 24 C -0.15 -2.91 10.05 -39.59 -0.40 -3.31 16 25 C -0.13 -2.75 9.68 -39.58 -0.38 -3.13 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.07 0.84 6.78 -51.93 -0.35 0.49 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.17 3.64 7.02 -52.49 -0.37 3.27 16 32 H 0.04 0.73 7.52 -51.93 -0.39 0.34 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.16 4.11 5.50 -52.48 -0.29 3.82 16 36 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 37 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 39 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -27.89 326.92 -9.48 -37.37 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.15 Total: 6.19 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -4.32 Total: -24.76 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.33 Total: -30.61 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.25 Total: -8.59 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.89 -9.48 -37.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223542226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.937 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds