Wall clock time and date at job start Tue Mar 31 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.78718 * 2 1 4 4 C 1.38180 * 119.16093 * 179.97438 * 3 2 1 5 5 N 1.31891 * 120.76782 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72178 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76588 * 359.73182 * 6 5 4 8 8 C 1.50695 * 120.42362 * 180.26609 * 7 6 5 9 9 O 1.42903 * 109.46791 * 0.27801 * 8 7 6 10 10 C 1.42906 * 114.00031 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.46712 * 330.00256 * 10 9 8 12 12 C 1.50699 * 109.46906 * 89.99700 * 10 9 8 13 13 H 1.08003 * 120.00064 * 240.00458 * 12 10 9 14 14 C 1.37874 * 120.00211 * 59.99995 * 12 10 9 15 15 N 1.31518 * 120.00004 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00102 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47191 * 60.00266 * 16 14 12 18 18 H 1.48499 * 109.47263 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47216 * 300.00280 * 16 14 12 20 20 C 1.50695 * 109.47091 * 209.99454 * 10 9 8 21 21 C 1.38231 * 120.00427 * 324.73021 * 20 10 9 22 22 C 1.38229 * 120.00222 * 179.78785 * 21 20 10 23 23 C 1.38236 * 119.99817 * 0.43577 * 22 21 20 24 24 C 1.38233 * 120.00069 * 359.81622 * 23 22 21 25 25 C 1.38230 * 120.00023 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47152 * 90.00212 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00313 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00294 * 1 2 3 29 29 H 1.07995 * 120.42093 * 359.95305 * 3 2 1 30 30 H 1.08001 * 119.62114 * 179.97438 * 4 3 2 31 31 H 1.07996 * 119.61320 * 179.97438 * 6 5 4 32 32 H 1.09007 * 109.47045 * 120.27236 * 8 7 6 33 33 H 1.08998 * 109.47579 * 240.27863 * 8 7 6 34 34 H 0.97001 * 120.00143 * 179.97438 * 15 14 12 35 35 H 1.08005 * 119.99403 * 359.97438 * 21 20 10 36 36 H 1.08006 * 120.00497 * 180.27439 * 22 21 20 37 37 H 1.08001 * 120.00064 * 179.83647 * 23 22 21 38 38 H 1.08007 * 119.99861 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00422 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1516 0.0005 7 6 2.2167 -1.1909 0.0061 8 6 1.4909 -2.5116 0.0121 9 8 2.4422 -3.5779 0.0174 10 6 1.8550 -4.8807 0.0239 11 1 0.8943 -4.8436 0.5376 12 6 1.6485 -5.3457 -1.3946 13 1 0.6549 -5.5806 -1.7467 14 6 2.7280 -5.4711 -2.2431 15 7 3.9381 -5.1855 -1.8143 16 14 2.4721 -6.0482 -4.0012 17 1 1.5698 -5.1027 -4.7061 18 1 3.7809 -6.0991 -4.7009 19 1 1.8622 -7.4022 -3.9939 20 6 2.7705 -5.8407 0.7389 21 6 4.1412 -5.7011 0.6282 22 6 4.9809 -6.5790 1.2877 23 6 4.4498 -7.6021 2.0506 24 6 3.0790 -7.7449 2.1572 25 6 2.2393 -6.8643 1.5012 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6967 2.1377 -0.0008 30 1 4.1583 2.0754 0.0001 31 1 4.1586 -2.0749 0.0001 32 1 0.8653 -2.5783 0.9023 33 1 0.8658 -2.5868 -0.8777 34 1 4.6976 -5.2741 -2.4111 35 1 4.5561 -4.9041 0.0288 36 1 6.0520 -6.4673 1.2048 37 1 5.1058 -8.2897 2.5638 38 1 2.6640 -8.5445 2.7530 39 1 1.1683 -6.9761 1.5841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223542226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:07 Heat of formation + Delta-G solvation = 3.148686 kcal Electronic energy + Delta-G solvation = -21835.611567 eV Core-core repulsion = 18707.671152 eV Total energy + Delta-G solvation = -3127.940415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18553 -39.90991 -38.05954 -35.28316 -34.60288 -32.78843 -31.80448 -31.22867 -28.94016 -28.47152 -27.11498 -24.73939 -23.37160 -22.94525 -22.33403 -21.77581 -18.73028 -17.72981 -17.53476 -17.11628 -16.91328 -16.22176 -16.14387 -15.97233 -15.45546 -15.03892 -14.80213 -14.76085 -14.15356 -13.77495 -13.75779 -13.69075 -13.52986 -13.35528 -13.19625 -12.90735 -12.79806 -12.63317 -12.25513 -11.94244 -11.91920 -11.50192 -11.07493 -10.69538 -10.33745 -10.28681 -10.07471 -9.63769 -9.39328 -9.14858 -7.89009 -6.31206 0.26250 0.36561 0.83814 1.01446 1.39167 1.40265 1.46153 2.39672 2.90619 3.01918 3.31856 3.40895 3.63764 3.89521 3.95483 4.14068 4.28871 4.37472 4.40347 4.51742 4.58517 4.65504 4.68407 4.70473 4.74947 4.82544 4.90804 5.00498 5.08999 5.16043 5.23874 5.27550 5.48755 5.51981 5.64292 5.70599 5.89045 5.91379 6.06491 6.18271 6.36936 6.54537 6.65373 7.04825 7.17392 7.47323 8.89836 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.005931 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.533215 B = 4720.092262 C = 5515.527748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.169 4.169 4 C 0.080 3.920 5 N -0.521 5.521 6 C 0.106 3.894 7 C -0.144 4.144 8 C 0.116 3.884 9 O -0.383 6.383 10 C 0.246 3.754 11 H 0.021 0.979 12 C -0.565 4.565 13 H 0.053 0.947 14 C 0.046 3.954 15 N -0.857 5.857 16 Si 0.940 3.060 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.068 4.068 21 C -0.066 4.066 22 C -0.163 4.163 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.142 4.142 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.174 0.826 30 H 0.184 0.816 31 H 0.137 0.863 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.258 0.742 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 7.926 5.472 10.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.057 4.057 3 C -0.188 4.188 4 C -0.077 4.077 5 N -0.231 5.231 6 C -0.050 4.050 7 C -0.146 4.146 8 C 0.038 3.962 9 O -0.303 6.303 10 C 0.191 3.809 11 H 0.039 0.961 12 C -0.602 4.602 13 H 0.071 0.929 14 C -0.158 4.158 15 N -0.492 5.492 16 Si 0.766 3.234 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.069 4.069 21 C -0.085 4.085 22 C -0.181 4.181 23 C -0.159 4.159 24 C -0.163 4.163 25 C -0.160 4.160 26 H 0.103 0.897 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.191 0.809 30 H 0.201 0.799 31 H 0.155 0.845 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.454 7.959 5.406 10.223 hybrid contribution -0.959 -0.748 -1.338 1.808 sum -4.414 7.211 4.068 9.383 Atomic orbital electron populations 1.20901 0.88083 1.04411 1.03715 1.20500 0.98376 0.91647 0.95133 1.22320 0.95157 0.99204 1.02110 1.23345 0.93018 0.96280 0.95052 1.67716 1.42364 0.99193 1.13824 1.22472 0.92323 0.95711 0.94468 1.20839 0.95411 0.95652 1.02731 1.20872 0.91164 0.84841 0.99282 1.87946 1.32928 1.14415 1.94995 1.18501 0.89359 0.80009 0.93073 0.96094 1.21602 0.93613 1.47833 0.97156 0.92878 1.25554 0.95028 0.94049 1.01186 1.70005 0.98662 1.45695 1.34796 0.85920 0.77287 0.78813 0.81351 1.19922 1.21074 1.20066 1.20118 0.95255 0.97209 0.94317 1.21680 0.93458 0.99900 0.93483 1.21389 0.99615 0.97479 0.99666 1.21229 0.95566 0.98703 1.00446 1.21131 0.93648 0.99975 1.01560 1.21049 0.99723 0.96386 0.98828 0.89738 0.88260 0.91296 0.80899 0.79941 0.84543 0.92510 0.93359 0.93204 0.84522 0.86537 0.84618 0.84326 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 9.68 71.24 0.69 -1.65 16 2 C -0.05 -1.36 5.92 -19.66 -0.12 -1.48 16 3 C -0.17 -3.98 9.82 22.36 0.22 -3.76 16 4 C 0.08 2.19 11.18 84.67 0.95 3.14 16 5 N -0.52 -19.32 10.36 -195.84 -2.03 -21.35 16 6 C 0.11 4.34 10.54 84.68 0.89 5.23 16 7 C -0.14 -5.32 5.90 -19.78 -0.12 -5.44 16 8 C 0.12 4.62 4.93 71.23 0.35 4.97 16 9 O -0.38 -18.58 7.05 -148.98 -1.05 -19.63 16 10 C 0.25 12.17 2.59 29.10 0.08 12.24 16 11 H 0.02 0.98 7.70 -2.39 -0.02 0.96 16 12 C -0.57 -30.13 8.89 25.60 0.23 -29.90 16 13 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 14 C 0.05 2.48 5.24 84.65 0.44 2.92 16 15 N -0.86 -46.80 8.50 21.45 0.18 -46.61 16 16 Si 0.94 43.05 29.54 68.60 2.03 45.08 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 C -0.07 -3.30 4.80 -19.87 -0.10 -3.39 16 21 C -0.07 -3.22 7.46 22.27 0.17 -3.06 16 22 C -0.16 -6.82 10.05 22.27 0.22 -6.60 16 23 C -0.14 -5.15 10.05 22.27 0.22 -4.93 16 24 C -0.15 -5.28 10.05 22.27 0.22 -5.06 16 25 C -0.14 -5.94 9.68 22.27 0.22 -5.72 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.10 1.40 8.10 -2.39 -0.02 1.38 16 28 H 0.07 1.47 6.78 -2.38 -0.02 1.45 16 29 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 30 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.14 6.45 7.02 -2.91 -0.02 6.43 16 32 H 0.06 2.04 7.52 -2.38 -0.02 2.02 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.14 7.38 5.50 -2.91 -0.02 7.36 16 36 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 38 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -63.77 326.92 4.74 -59.03 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 1.04 Total: 25.96 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 4.57 Total: -42.48 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -1.85 Total: -67.97 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -1.05 Total: -19.63 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -63.77 4.74 -59.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223542226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.180 kcal (2) G-P(sol) polarization free energy of solvation -63.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds