Wall clock time and date at job start Tue Mar 31 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38665 * 120.78787 * 2 1 4 4 C 1.38182 * 119.16269 * 179.97438 * 3 2 1 5 5 N 1.31892 * 120.76357 * 0.02562 * 4 3 2 6 6 C 1.31853 * 121.72591 * 359.97438 * 5 4 3 7 7 C 1.38228 * 120.76371 * 359.73567 * 6 5 4 8 8 C 1.50695 * 120.42003 * 180.26837 * 7 6 5 9 9 O 1.42898 * 109.47054 * 0.27262 * 8 7 6 10 10 C 1.42901 * 113.99904 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47569 * 29.99003 * 10 9 8 12 12 C 1.50709 * 109.46818 * 269.99835 * 10 9 8 13 13 H 1.08004 * 119.99710 * 305.28199 * 12 10 9 14 14 C 1.37873 * 120.00271 * 125.28255 * 12 10 9 15 15 N 1.31512 * 119.99926 * 173.44874 * 14 12 10 16 16 Si 1.86796 * 119.99735 * 353.44891 * 14 12 10 17 17 H 1.48498 * 109.47345 * 85.12076 * 16 14 12 18 18 H 1.48505 * 109.47168 * 205.11583 * 16 14 12 19 19 H 1.48505 * 109.47446 * 325.11314 * 16 14 12 20 20 C 1.50700 * 109.47457 * 150.00051 * 10 9 8 21 21 C 1.38235 * 119.99703 * 35.35782 * 20 10 9 22 22 C 1.38238 * 119.99307 * 179.79306 * 21 20 10 23 23 C 1.38233 * 120.00591 * 0.43741 * 22 21 20 24 24 C 1.38244 * 119.99520 * 359.81778 * 23 22 21 25 25 C 1.38229 * 120.00090 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47276 * 90.00144 * 1 2 3 27 27 H 1.09003 * 109.46917 * 330.00224 * 1 2 3 28 28 H 1.09001 * 109.46912 * 210.00327 * 1 2 3 29 29 H 1.08002 * 120.41947 * 359.95364 * 3 2 1 30 30 H 1.08002 * 119.62000 * 179.97438 * 4 3 2 31 31 H 1.07991 * 119.61694 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.47363 * 120.27203 * 8 7 6 33 33 H 1.09006 * 109.46970 * 240.27107 * 8 7 6 34 34 H 0.97004 * 119.99582 * 180.02562 * 15 14 12 35 35 H 1.07987 * 120.00448 * 0.02562 * 21 20 10 36 36 H 1.08003 * 119.99943 * 180.27993 * 22 21 20 37 37 H 1.08000 * 120.00667 * 179.83796 * 23 22 21 38 38 H 1.07995 * 119.99492 * 179.97438 * 24 23 22 39 39 H 1.08005 * 120.00053 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0000 0.0005 6 6 3.5983 -1.1517 0.0005 7 6 2.2166 -1.1909 0.0060 8 6 1.4908 -2.5116 0.0120 9 8 2.4422 -3.5779 0.0174 10 6 1.8550 -4.8806 0.0228 11 1 0.8945 -4.8485 -0.4916 12 6 1.6477 -5.3323 1.4456 13 1 2.4788 -5.3427 2.1353 14 6 0.3973 -5.7322 1.8668 15 7 0.2412 -6.2471 3.0668 16 14 -1.0750 -5.5426 0.7329 17 1 -1.1610 -6.7200 -0.1679 18 1 -2.3155 -5.4482 1.5439 19 1 -0.9192 -4.3087 -0.0786 20 6 2.7707 -5.8474 -0.6828 21 6 4.1414 -5.7078 -0.5711 22 6 4.9814 -6.5973 -1.2149 23 6 4.4507 -7.6208 -1.9775 24 6 3.0799 -7.7571 -2.0934 25 6 2.2400 -6.8703 -1.4463 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6966 2.1377 -0.0008 30 1 4.1583 2.0754 0.0001 31 1 4.1585 -2.0749 0.0001 32 1 0.8653 -2.5784 0.9022 33 1 0.8657 -2.5867 -0.8778 34 1 -0.6386 -6.5288 3.3629 35 1 4.5561 -4.9063 0.0220 36 1 6.0523 -6.4910 -1.1240 37 1 5.1069 -8.3141 -2.4826 38 1 2.6653 -8.5565 -2.6896 39 1 1.1690 -6.9771 -1.5365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223542228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:09 Heat of formation + Delta-G solvation = -9.300696 kcal Electronic energy + Delta-G solvation = -21564.446822 eV Core-core repulsion = 18435.966562 eV Total energy + Delta-G solvation = -3128.480260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28225 -40.18809 -38.40494 -35.32825 -34.79428 -33.23525 -32.06652 -31.62881 -29.17952 -28.73449 -27.32052 -24.72767 -23.53743 -23.20137 -22.43465 -21.74003 -19.33058 -18.04113 -17.88525 -17.27911 -16.81115 -16.56200 -16.33877 -16.00395 -15.68659 -15.09589 -14.93410 -14.87546 -14.64123 -14.13478 -14.00097 -13.76677 -13.63661 -13.61746 -13.43912 -13.27401 -12.91965 -12.67569 -12.31764 -12.11068 -11.91411 -11.82698 -11.28995 -10.91466 -10.54665 -10.36863 -10.27521 -9.79481 -9.69433 -9.41580 -8.42417 -6.51139 0.18317 0.29629 0.60508 0.64620 1.24033 1.26024 1.35217 2.20447 2.69262 2.83778 3.02638 3.11715 3.54700 3.81846 3.86307 4.00819 4.09798 4.17990 4.26197 4.29116 4.37995 4.41590 4.51582 4.59201 4.63666 4.66789 4.73763 4.84200 4.88218 4.92832 5.03746 5.20377 5.21406 5.28893 5.35718 5.44691 5.68822 5.73095 5.80989 5.88386 6.06025 6.26057 6.48247 6.65019 7.06173 7.17946 8.74477 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.006320 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.788730 B = 4429.578123 C = 5891.712544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.047 4.047 3 C -0.165 4.165 4 C 0.085 3.915 5 N -0.516 5.516 6 C 0.105 3.895 7 C -0.149 4.149 8 C 0.115 3.885 9 O -0.398 6.398 10 C 0.222 3.778 11 H 0.039 0.961 12 C -0.529 4.529 13 H 0.028 0.972 14 C 0.026 3.974 15 N -0.932 5.932 16 Si 0.925 3.075 17 H -0.255 1.255 18 H -0.277 1.277 19 H -0.240 1.240 20 C -0.069 4.069 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.119 4.119 25 C -0.144 4.144 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.174 0.826 30 H 0.187 0.813 31 H 0.145 0.855 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.271 0.729 35 H 0.106 0.894 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 9.775 -11.650 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.055 4.055 3 C -0.185 4.185 4 C -0.072 4.072 5 N -0.226 5.226 6 C -0.051 4.051 7 C -0.151 4.151 8 C 0.038 3.962 9 O -0.318 6.318 10 C 0.166 3.834 11 H 0.056 0.944 12 C -0.566 4.566 13 H 0.047 0.953 14 C -0.174 4.174 15 N -0.571 5.571 16 Si 0.748 3.252 17 H -0.179 1.179 18 H -0.202 1.202 19 H -0.164 1.164 20 C -0.069 4.069 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.137 4.137 25 C -0.162 4.162 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.192 0.808 30 H 0.204 0.796 31 H 0.163 0.837 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.159 0.841 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.576 9.726 -11.514 15.154 hybrid contribution -1.768 -0.415 0.554 1.898 sum -0.192 9.311 -10.960 14.383 Atomic orbital electron populations 1.20948 0.88540 1.04166 1.04045 1.20464 0.98164 0.91844 0.95051 1.22334 0.95288 0.99058 1.01774 1.23381 0.92838 0.96433 0.94515 1.67735 1.42073 0.99089 1.13679 1.22508 0.91803 0.96139 0.94650 1.20755 0.95748 0.95023 1.03586 1.20956 0.91003 0.84445 0.99791 1.87722 1.34150 1.14744 1.95205 1.18928 0.91280 0.79944 0.93205 0.94386 1.21373 0.95501 1.44124 0.95626 0.95345 1.25954 1.01648 0.93217 0.96575 1.70045 1.24887 1.41518 1.20665 0.86071 0.78592 0.81000 0.79586 1.17944 1.20227 1.16380 1.20181 0.95111 0.96939 0.94717 1.20976 0.93134 0.99852 1.00110 1.21415 1.00320 0.95084 0.97415 1.21407 0.95317 0.98722 0.99842 1.21352 0.93952 0.98841 0.99571 1.21049 1.00026 0.96359 0.98763 0.88850 0.88279 0.92234 0.80832 0.79604 0.83725 0.93335 0.92065 0.91958 0.87553 0.84079 0.82977 0.83443 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.68 71.24 0.69 -1.83 16 2 C -0.05 -1.27 5.92 -19.67 -0.12 -1.38 16 3 C -0.17 -3.59 9.82 22.36 0.22 -3.37 16 4 C 0.08 2.09 11.18 84.67 0.95 3.03 16 5 N -0.52 -17.05 10.36 -195.84 -2.03 -19.08 16 6 C 0.10 3.83 10.54 84.69 0.89 4.72 16 7 C -0.15 -5.17 5.90 -19.77 -0.12 -5.29 16 8 C 0.12 4.52 4.93 71.23 0.35 4.87 16 9 O -0.40 -18.16 7.65 -148.98 -1.14 -19.30 16 10 C 0.22 10.72 2.29 29.10 0.07 10.78 16 11 H 0.04 1.77 4.21 -2.39 -0.01 1.76 16 12 C -0.53 -30.47 9.17 25.60 0.23 -30.24 16 13 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 14 C 0.03 1.47 5.47 84.65 0.46 1.93 16 15 N -0.93 -57.04 13.96 21.45 0.30 -56.74 16 16 Si 0.93 41.20 27.06 68.60 1.86 43.06 16 17 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.24 -9.63 6.64 99.48 0.66 -8.97 16 20 C -0.07 -3.07 4.98 -19.87 -0.10 -3.17 16 21 C -0.12 -5.05 9.35 22.27 0.21 -4.84 16 22 C -0.12 -4.10 10.05 22.27 0.22 -3.88 16 23 C -0.14 -3.94 10.05 22.27 0.22 -3.71 16 24 C -0.12 -3.76 10.05 22.27 0.22 -3.53 16 25 C -0.14 -5.62 9.68 22.27 0.22 -5.40 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.10 1.51 8.10 -2.39 -0.02 1.49 16 28 H 0.06 1.45 6.78 -2.39 -0.02 1.43 16 29 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.19 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.15 5.73 7.02 -2.91 -0.02 5.71 16 32 H 0.05 2.05 7.58 -2.39 -0.02 2.04 16 33 H 0.06 2.19 8.09 -2.38 -0.02 2.17 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.11 4.57 7.64 -2.92 -0.02 4.54 16 36 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 37 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -71.20 331.21 4.61 -66.59 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 1.00 Total: 26.78 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 4.63 Total: -41.30 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -1.73 Total: -75.82 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -1.14 Total: -19.30 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.86 Total: 43.06 kcal Total: -71.20 4.61 -66.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223542228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.286 kcal (2) G-P(sol) polarization free energy of solvation -71.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds