Wall clock time and date at job start Tue Mar 31 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47438 * 299.99857 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00305 * 3 2 1 7 7 C 1.37882 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.46964 * 60.00152 * 9 7 2 12 12 C 1.42899 * 114.00025 * 90.00040 * 11 9 7 13 13 C 1.53006 * 109.47075 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.46909 * 179.97438 * 13 12 11 15 15 C 1.38656 * 120.79107 * 269.72248 * 14 13 12 16 16 C 1.38205 * 119.16156 * 179.79854 * 15 14 13 17 17 N 1.31866 * 120.76495 * 0.49031 * 16 15 14 18 18 C 1.31876 * 121.72689 * 359.73437 * 17 16 15 19 19 C 1.38205 * 120.76145 * 0.02979 * 18 17 16 20 20 C 1.50703 * 109.47227 * 300.00125 * 9 7 2 21 21 C 1.38236 * 119.99787 * 84.72708 * 20 9 7 22 22 C 1.38241 * 119.99636 * 179.81278 * 21 20 9 23 23 C 1.38234 * 120.00115 * 0.39672 * 22 21 20 24 24 C 1.38240 * 119.99714 * 359.85290 * 23 22 21 25 25 C 1.38228 * 120.00011 * 265.00351 * 20 9 7 26 26 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47064 * 299.99806 * 12 11 9 28 28 H 1.09007 * 109.47276 * 60.00167 * 12 11 9 29 29 H 1.09000 * 109.47373 * 300.00053 * 13 12 11 30 30 H 1.08998 * 109.46522 * 60.00416 * 13 12 11 31 31 H 1.07999 * 120.41675 * 359.97438 * 15 14 13 32 32 H 1.07999 * 119.61437 * 180.24547 * 16 15 14 33 33 H 1.07998 * 119.61330 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.41469 * 179.97438 * 19 18 17 35 35 H 1.07996 * 120.00216 * 359.97438 * 21 20 9 36 36 H 1.08000 * 119.99857 * 180.22806 * 22 21 20 37 37 H 1.07998 * 120.00030 * 179.84064 * 23 22 21 38 38 H 1.08003 * 119.99655 * 179.97438 * 24 23 22 39 39 H 1.08004 * 120.00508 * 359.97379 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4291 -2.5746 -1.1670 12 6 1.0736 -3.1704 -2.2947 13 6 0.1055 -3.1992 -3.4791 14 6 0.7854 -3.8269 -4.6685 15 6 1.4895 -3.0497 -5.5755 16 6 2.1037 -3.6611 -6.6521 17 7 2.0175 -4.9654 -6.8265 18 6 1.3527 -5.7349 -5.9868 19 6 0.7170 -5.1947 -4.8849 20 6 0.3851 -2.5793 1.2302 21 6 -0.8704 -2.0007 1.2308 22 6 -1.6662 -2.0776 2.3585 23 6 -1.2034 -2.7259 3.4883 24 6 0.0542 -3.3000 3.4894 25 6 0.8485 -3.2263 2.3604 26 1 -0.4850 0.8401 -0.0004 27 1 1.9552 -2.5867 -2.5596 28 1 1.3732 -4.1886 -2.0460 29 1 -0.7759 -3.7831 -3.2139 30 1 -0.1944 -2.1812 -3.7280 31 1 1.5595 -1.9805 -5.4408 32 1 2.6574 -3.0633 -7.3609 33 1 1.3045 -6.7994 -6.1624 34 1 0.1737 -5.8301 -4.2011 35 1 -1.2305 -1.4910 0.3495 36 1 -2.6486 -1.6288 2.3578 37 1 -1.8242 -2.7837 4.3702 38 1 0.4159 -3.8061 4.3722 39 1 1.8310 -3.6749 2.3614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224954680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:53 Heat of formation + Delta-G solvation = 14.681840 kcal Electronic energy + Delta-G solvation = -21256.586269 eV Core-core repulsion = 18129.145969 eV Total energy + Delta-G solvation = -3127.440300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.06554 -38.27808 -36.55408 -34.20894 -32.67700 -31.13550 -30.55517 -29.66925 -28.78748 -26.67619 -23.71559 -23.38205 -22.70813 -21.41808 -20.96847 -20.11245 -16.90701 -16.45213 -16.29613 -15.79297 -15.52586 -15.26830 -14.64613 -14.30795 -14.20259 -13.79508 -13.57702 -13.34703 -13.11792 -12.65477 -12.35439 -12.13958 -11.84973 -11.72584 -11.50864 -11.13508 -11.02834 -10.83641 -10.62858 -10.34090 -10.09013 -9.71111 -9.44258 -9.38043 -9.23652 -9.10261 -8.76724 -8.14308 -7.74947 -7.44074 -5.98205 -4.31776 1.19014 1.32358 2.47773 2.63301 3.20761 3.29517 3.32399 3.86229 4.30183 4.48898 4.58510 4.84437 5.00554 5.12938 5.19573 5.22547 5.33826 5.54948 5.65794 5.81424 5.84709 5.87422 5.97154 6.02768 6.07408 6.19604 6.27626 6.37854 6.49712 6.61057 6.67487 6.76977 6.83500 6.91575 7.12411 7.30101 7.51797 7.62045 7.84479 8.00174 8.02905 8.06645 8.30870 8.50978 8.91303 9.43816 10.85882 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.004699 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.014367 B = 5957.308624 C = 7167.458135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.085 3.915 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.246 3.754 10 H 0.016 0.984 11 O -0.369 6.369 12 C 0.082 3.918 13 C -0.082 4.082 14 C -0.024 4.024 15 C -0.168 4.168 16 C 0.095 3.905 17 N -0.496 5.496 18 C 0.094 3.906 19 C -0.171 4.171 20 C -0.041 4.041 21 C -0.044 4.044 22 C -0.155 4.155 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.130 4.130 26 H 0.261 0.739 27 H 0.042 0.958 28 H 0.025 0.975 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.134 0.866 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 -6.678 -5.706 8.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.121 4.121 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.078 0.922 9 C 0.190 3.810 10 H 0.034 0.966 11 O -0.288 6.288 12 C 0.004 3.996 13 C -0.120 4.120 14 C -0.033 4.033 15 C -0.187 4.187 16 C -0.061 4.061 17 N -0.206 5.206 18 C -0.063 4.063 19 C -0.191 4.191 20 C -0.042 4.042 21 C -0.063 4.063 22 C -0.173 4.173 23 C -0.165 4.165 24 C -0.169 4.169 25 C -0.149 4.149 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.154 0.846 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.182 0.818 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.811 -6.856 -6.436 9.438 hybrid contribution 0.418 1.416 1.039 1.805 sum -0.393 -5.440 -5.397 7.673 Atomic orbital electron populations 1.69825 1.05781 1.25822 1.46840 1.24974 0.94748 0.99076 0.93297 0.86591 0.80286 0.83669 0.77775 1.19733 1.20747 1.20802 1.21473 0.92950 0.90877 1.52747 0.92181 1.18545 0.86925 0.94630 0.80873 0.96567 1.87987 1.40342 1.80987 1.19477 1.21939 0.94725 0.95539 0.87413 1.20569 0.98388 1.01800 0.91220 1.20393 0.94124 0.93554 0.95184 1.22166 0.99027 1.01752 0.95794 1.22716 0.96493 0.90872 0.96061 1.67640 1.17055 1.06288 1.29576 1.22699 0.93146 0.99819 0.90606 1.22110 1.02006 0.95441 0.99531 1.19997 0.94370 0.94328 0.95473 1.21869 0.92764 0.92325 0.99301 1.21162 0.99679 1.01682 0.94786 1.20821 0.96422 1.01365 0.97862 1.20701 0.95382 1.03112 0.97672 1.20793 0.98934 1.01290 0.93834 0.92830 0.93945 0.95675 0.90278 0.89706 0.84573 0.82973 0.83039 0.84799 0.81834 0.88050 0.88298 0.88031 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.21 8.50 55.43 0.47 -21.74 16 2 C 0.08 2.21 5.24 -17.82 -0.09 2.11 16 3 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -14.25 8.89 -34.44 -0.31 -14.56 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.25 5.97 2.59 -29.03 -0.08 5.90 16 10 H 0.02 0.38 7.70 -51.93 -0.40 -0.02 16 11 O -0.37 -8.59 8.53 -35.23 -0.30 -8.89 16 12 C 0.08 1.56 5.72 37.16 0.21 1.77 16 13 C -0.08 -1.29 5.76 -27.88 -0.16 -1.46 16 14 C -0.02 -0.34 5.17 -104.32 -0.54 -0.88 16 15 C -0.17 -2.20 9.82 -39.44 -0.39 -2.59 16 16 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 17 N -0.50 -6.73 10.36 -13.25 -0.14 -6.87 16 18 C 0.09 1.14 11.18 -17.54 -0.20 0.94 16 19 C -0.17 -2.13 9.82 -39.44 -0.39 -2.52 16 20 C -0.04 -0.98 4.80 -104.62 -0.50 -1.48 16 21 C -0.04 -1.03 7.46 -39.58 -0.30 -1.33 16 22 C -0.15 -3.23 10.05 -39.58 -0.40 -3.63 16 23 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 24 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 25 C -0.13 -2.80 9.68 -39.59 -0.38 -3.18 16 26 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.45 8.09 -51.92 -0.42 0.03 16 29 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.08 1.39 8.10 -51.93 -0.42 0.96 16 31 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.16 4.16 5.50 -52.49 -0.29 3.87 16 36 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.10 2.03 8.06 -52.48 -0.42 1.60 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -28.55 331.93 -9.79 -38.34 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.30 Total: 5.23 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -4.50 Total: -26.46 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 0.33 Total: -28.61 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.30 Total: -8.89 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.55 -9.79 -38.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224954680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.021 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds