Wall clock time and date at job start Tue Mar 31 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48500 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47264 * 299.99774 * 3 2 1 6 6 H 1.48497 * 109.47109 * 60.00224 * 3 2 1 7 7 C 1.37879 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00115 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00109 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47213 * 179.97438 * 9 7 2 11 11 O 1.42894 * 109.47432 * 59.99321 * 9 7 2 12 12 C 1.42903 * 113.99967 * 90.00176 * 11 9 7 13 13 C 1.52995 * 109.47176 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.47285 * 179.97438 * 13 12 11 15 15 C 1.38675 * 120.41529 * 89.99913 * 14 13 12 16 16 C 1.38631 * 118.41792 * 179.97438 * 15 14 13 17 17 C 1.38221 * 119.16077 * 0.25627 * 16 15 14 18 18 N 1.31860 * 120.76509 * 359.49797 * 17 16 15 19 19 C 1.31882 * 121.72556 * 0.49011 * 18 17 16 20 20 C 1.50703 * 109.46661 * 299.99631 * 9 7 2 21 21 C 1.38232 * 120.00149 * 84.72719 * 20 9 7 22 22 C 1.38233 * 120.00075 * 179.80601 * 21 20 9 23 23 C 1.38231 * 119.99949 * 0.40198 * 22 21 20 24 24 C 1.38232 * 120.00289 * 359.84915 * 23 22 21 25 25 C 1.38238 * 119.99773 * 264.99945 * 20 9 7 26 26 H 0.97000 * 119.99994 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46891 * 60.00005 * 12 11 9 28 28 H 1.09001 * 109.47217 * 299.99798 * 12 11 9 29 29 H 1.09008 * 109.47427 * 59.99998 * 13 12 11 30 30 H 1.08998 * 109.47562 * 299.99905 * 13 12 11 31 31 H 1.07998 * 120.79161 * 359.96013 * 15 14 13 32 32 H 1.08002 * 120.41548 * 179.97438 * 16 15 14 33 33 H 1.08002 * 119.62066 * 179.74470 * 17 16 15 34 34 H 1.07993 * 119.62126 * 179.75488 * 19 18 17 35 35 H 1.08001 * 120.00041 * 359.97438 * 21 20 9 36 36 H 1.08001 * 120.00170 * 180.23067 * 22 21 20 37 37 H 1.08006 * 120.00023 * 179.83267 * 23 22 21 38 38 H 1.08001 * 120.00539 * 179.97438 * 24 23 22 39 39 H 1.07994 * 120.00036 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 1.9593 -3.3277 0.0005 11 8 0.4298 -2.5751 -1.1664 12 6 1.0750 -3.1714 -2.2934 13 6 0.1081 -3.1996 -3.4788 14 6 0.7888 -3.8279 -4.6675 15 6 0.7145 -5.1968 -4.8765 16 6 1.3557 -5.7309 -5.9836 17 6 2.0471 -4.8880 -6.8332 18 7 2.0925 -3.5899 -6.6057 19 6 1.4943 -3.0472 -5.5632 20 6 0.3842 -2.5786 1.2308 21 6 -0.8712 -2.0000 1.2304 22 6 -1.6679 -2.0764 2.3575 23 6 -1.2058 -2.7242 3.4878 24 6 0.0516 -3.2983 3.4901 25 6 0.8468 -3.2253 2.3616 26 1 -0.4850 0.8400 0.0004 27 1 1.3744 -4.1894 -2.0440 28 1 1.9567 -2.5879 -2.5581 29 1 -0.1910 -2.1814 -3.7280 30 1 -0.7739 -3.7829 -3.2145 31 1 0.1705 -5.8318 -4.1930 32 1 1.3191 -6.7928 -6.1771 33 1 2.5527 -5.2967 -7.6956 34 1 1.5568 -1.9804 -5.4074 35 1 -1.2307 -1.4906 0.3485 36 1 -2.6502 -1.6276 2.3559 37 1 -1.8272 -2.7815 4.3694 38 1 0.4128 -3.8041 4.3733 39 1 1.8292 -3.6739 2.3633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224968167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:49 Heat of formation + Delta-G solvation = 15.169734 kcal Electronic energy + Delta-G solvation = -21265.365897 eV Core-core repulsion = 18137.946754 eV Total energy + Delta-G solvation = -3127.419143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08405 -38.26217 -36.50951 -33.98220 -32.62481 -31.86336 -30.46361 -29.63460 -28.34848 -26.62948 -23.65236 -23.48188 -22.69029 -21.40405 -20.92669 -20.09248 -17.05165 -16.77324 -16.31342 -15.88550 -15.39616 -15.00728 -14.50749 -14.26498 -14.12944 -13.78951 -13.41767 -13.08914 -13.02209 -12.97329 -12.57320 -12.20378 -11.79742 -11.68454 -11.48992 -11.09762 -11.00424 -10.79225 -10.63681 -10.31181 -10.07659 -9.74825 -9.66115 -9.37977 -9.22805 -8.87285 -8.72512 -8.11930 -7.73625 -7.42636 -5.96032 -4.29499 1.16259 1.32944 2.48920 2.64450 3.23257 3.31853 3.34833 3.85413 4.32570 4.47326 4.73102 4.85557 5.01323 5.05240 5.09448 5.17927 5.35628 5.48536 5.73596 5.82419 5.83295 5.90938 5.99736 6.07830 6.13297 6.16346 6.27934 6.38267 6.51225 6.62749 6.66776 6.77844 6.85071 6.93264 7.13736 7.31327 7.52973 7.64023 7.86234 8.02250 8.04651 8.08517 8.32319 8.53416 8.93727 9.46127 10.88101 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.004719 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.084603 B = 5931.460122 C = 7139.655413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.085 3.915 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.246 3.754 10 H 0.016 0.984 11 O -0.369 6.369 12 C 0.081 3.919 13 C -0.076 4.076 14 C -0.118 4.118 15 C -0.075 4.075 16 C -0.174 4.174 17 C 0.083 3.917 18 N -0.486 5.486 19 C 0.102 3.898 20 C -0.041 4.041 21 C -0.044 4.044 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.130 4.130 26 H 0.261 0.739 27 H 0.024 0.976 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -8.696 -6.038 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.121 4.121 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.078 0.922 9 C 0.190 3.810 10 H 0.034 0.966 11 O -0.288 6.288 12 C 0.003 3.997 13 C -0.114 4.114 14 C -0.120 4.120 15 C -0.101 4.101 16 C -0.194 4.194 17 C -0.074 4.074 18 N -0.194 5.194 19 C -0.054 4.054 20 C -0.041 4.041 21 C -0.062 4.062 22 C -0.173 4.173 23 C -0.165 4.165 24 C -0.169 4.169 25 C -0.149 4.149 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.182 0.818 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.882 -7.956 -6.636 10.397 hybrid contribution 0.381 0.377 0.871 1.022 sum -0.501 -7.579 -5.765 9.536 Atomic orbital electron populations 1.69823 1.05776 1.25814 1.46866 1.24968 0.94746 0.99067 0.93287 0.86592 0.80293 0.83679 0.77769 1.19739 1.20713 1.20829 1.21472 0.92948 0.90881 1.52731 0.92192 1.18540 0.86921 0.94613 0.80900 0.96609 1.87985 1.40343 1.80981 1.19506 1.21975 0.94857 0.95412 0.87485 1.20460 0.98159 1.01731 0.91026 1.20979 0.98774 0.94392 0.97818 1.21565 0.97232 0.94746 0.96575 1.22106 0.99726 1.01217 0.96329 1.22697 0.96676 0.89232 0.98745 1.67689 1.18465 1.13553 1.19716 1.22793 0.92506 1.00699 0.89450 1.20003 0.94365 0.94291 0.95478 1.21871 0.92753 0.92301 0.99318 1.21160 0.99680 1.01689 0.94789 1.20816 0.96425 1.01392 0.97856 1.20698 0.95385 1.03135 0.97670 1.20796 0.98923 1.01315 0.93842 0.92835 0.95823 0.93965 0.89757 0.90523 0.84844 0.85079 0.83181 0.82551 0.81809 0.88056 0.88316 0.88051 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.32 8.50 55.43 0.47 -21.85 16 2 C 0.08 2.23 5.24 -17.82 -0.09 2.13 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.54 -14.33 8.89 -34.44 -0.31 -14.64 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.25 6.00 2.59 -29.03 -0.08 5.92 16 10 H 0.02 0.37 7.70 -51.93 -0.40 -0.03 16 11 O -0.37 -8.62 8.53 -35.23 -0.30 -8.92 16 12 C 0.08 1.54 5.72 37.16 0.21 1.75 16 13 C -0.08 -1.19 5.74 -27.88 -0.16 -1.35 16 14 C -0.12 -1.65 5.15 -104.48 -0.54 -2.19 16 15 C -0.08 -0.91 9.86 -39.28 -0.39 -1.30 16 16 C -0.17 -1.87 10.11 -39.44 -0.40 -2.27 16 17 C 0.08 0.98 11.18 -17.55 -0.20 0.79 16 18 N -0.49 -7.01 10.36 -13.25 -0.14 -7.15 16 19 C 0.10 1.48 10.86 -17.55 -0.19 1.29 16 20 C -0.04 -0.97 4.80 -104.62 -0.50 -1.47 16 21 C -0.04 -1.03 7.46 -39.59 -0.30 -1.33 16 22 C -0.15 -3.25 10.05 -39.59 -0.40 -3.64 16 23 C -0.15 -2.85 10.05 -39.59 -0.40 -3.24 16 24 C -0.15 -2.94 10.05 -39.58 -0.40 -3.34 16 25 C -0.13 -2.81 9.68 -39.58 -0.38 -3.19 16 26 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 27 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.37 8.09 -51.92 -0.42 0.95 16 30 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.16 4.18 5.50 -52.49 -0.29 3.89 16 36 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -28.70 331.88 -9.79 -38.49 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.30 Total: 4.96 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -4.51 Total: -26.09 kcal Atomic # 7 Polarization: -29.33 SS G_CDS: 0.33 Total: -29.00 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.30 Total: -8.92 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.70 -9.79 -38.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224968167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.658 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds