Wall clock time and date at job start Tue Mar 31 2020 05:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00223 * 2 1 4 4 H 1.48497 * 109.47320 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47183 * 300.00642 * 3 2 1 6 6 H 1.48507 * 109.46551 * 60.00487 * 3 2 1 7 7 C 1.37878 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00362 * 188.49722 * 7 2 1 9 9 C 1.50702 * 119.99816 * 8.49397 * 7 2 1 10 10 H 1.09003 * 109.47145 * 185.47343 * 9 7 2 11 11 O 1.42902 * 109.46918 * 305.47775 * 9 7 2 12 12 C 1.42897 * 113.99896 * 269.99464 * 11 9 7 13 13 C 1.52995 * 109.47415 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47555 * 180.02562 * 13 12 11 15 15 C 1.38667 * 120.41427 * 269.72110 * 14 13 12 16 16 C 1.38634 * 118.41830 * 179.78589 * 15 14 13 17 17 C 1.38231 * 119.15979 * 0.50435 * 16 15 14 18 18 N 1.31852 * 120.76144 * 359.73510 * 17 16 15 19 19 C 1.31884 * 121.72916 * 359.97438 * 18 17 16 20 20 C 1.50701 * 109.47045 * 65.47505 * 9 7 2 21 21 C 1.38237 * 119.99669 * 89.40091 * 20 9 7 22 22 C 1.38236 * 119.99797 * 179.97438 * 21 20 9 23 23 C 1.38237 * 120.00177 * 359.95644 * 22 21 20 24 24 C 1.38241 * 119.99742 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.00075 * 269.38076 * 20 9 7 26 26 H 0.96998 * 119.99380 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47472 * 300.00668 * 12 11 9 28 28 H 1.09004 * 109.46744 * 60.00324 * 12 11 9 29 29 H 1.09002 * 109.46993 * 300.00529 * 13 12 11 30 30 H 1.08997 * 109.47078 * 59.99832 * 13 12 11 31 31 H 1.07994 * 120.79328 * 0.02562 * 15 14 13 32 32 H 1.07998 * 120.42068 * 180.22394 * 16 15 14 33 33 H 1.07997 * 119.62088 * 179.74962 * 17 16 15 34 34 H 1.08001 * 119.62059 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.00434 * 359.97438 * 21 20 9 36 36 H 1.08003 * 120.00002 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.00362 * 179.72000 * 23 22 21 38 38 H 1.07999 * 119.99669 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.00051 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0757 -1.1993 0.1377 9 6 1.2635 -2.4919 -0.1939 10 1 1.9533 -3.3265 -0.0682 11 8 0.2154 -2.5905 0.7725 12 6 0.6078 -3.2214 1.9931 13 6 -0.5866 -3.2726 2.9478 14 6 -0.1727 -3.9374 4.2353 15 6 -0.2982 -5.3099 4.3887 16 6 0.0994 -5.8788 5.5887 17 6 0.5944 -5.0635 6.5893 18 7 0.6950 -3.7611 6.4100 19 6 0.3318 -3.1865 5.2798 20 6 0.6738 -2.5319 -1.5802 21 6 1.4098 -3.0497 -2.6296 22 6 0.8688 -3.0869 -3.9011 23 6 -0.4086 -2.6072 -4.1231 24 6 -1.1447 -2.0899 -3.0736 25 6 -0.6031 -2.0514 -1.8023 26 1 -0.4849 0.8401 0.0004 27 1 0.9495 -4.2353 1.7846 28 1 1.4164 -2.6528 2.4524 29 1 -0.9287 -2.2588 3.1564 30 1 -1.3950 -3.8414 2.4883 31 1 -0.6927 -5.9215 3.5908 32 1 0.0193 -6.9449 5.7416 33 1 0.9026 -5.4983 7.5286 34 1 0.4292 -2.1165 5.1696 35 1 2.4075 -3.4250 -2.4561 36 1 1.4439 -3.4910 -4.7211 37 1 -0.8296 -2.6322 -5.1173 38 1 -2.1425 -1.7148 -3.2471 39 1 -1.1781 -1.6468 -0.9824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224968174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:51 Heat of formation + Delta-G solvation = 11.601780 kcal Electronic energy + Delta-G solvation = -21259.085574 eV Core-core repulsion = 18131.511713 eV Total energy + Delta-G solvation = -3127.573861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.05767 -38.32141 -36.49547 -33.94360 -32.51724 -31.83098 -30.54792 -29.78972 -28.32053 -26.56520 -23.62734 -23.45657 -22.72211 -21.48353 -20.89429 -20.10902 -17.02113 -16.73800 -16.28498 -15.94267 -15.35893 -14.97967 -14.45170 -14.30382 -14.08152 -13.82033 -13.43714 -13.12466 -12.98974 -12.92838 -12.61514 -12.28772 -11.80491 -11.66632 -11.53366 -11.08352 -10.97620 -10.77049 -10.60704 -10.34702 -10.05440 -9.79578 -9.67244 -9.35463 -9.24554 -8.83610 -8.66152 -8.09803 -7.84336 -7.48542 -6.03188 -4.21688 1.18890 1.35378 2.39689 2.50655 3.25193 3.34131 3.37302 3.88017 4.36312 4.50007 4.76043 4.87746 4.91503 5.06337 5.12027 5.22350 5.36204 5.51595 5.74862 5.77019 5.85600 5.86957 5.94118 6.09847 6.12815 6.17420 6.31337 6.33259 6.51218 6.61943 6.70612 6.75285 6.80931 6.89576 7.05279 7.18962 7.43790 7.62774 7.79727 7.92528 8.04793 8.07655 8.16171 8.55430 8.98543 9.50696 10.94379 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.004722 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.657133 B = 5928.452629 C = 7116.721609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.089 3.911 3 Si 0.882 3.118 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.554 4.554 8 H 0.059 0.941 9 C 0.246 3.754 10 H 0.016 0.984 11 O -0.359 6.359 12 C 0.082 3.918 13 C -0.075 4.075 14 C -0.117 4.117 15 C -0.076 4.076 16 C -0.174 4.174 17 C 0.083 3.917 18 N -0.486 5.486 19 C 0.103 3.897 20 C -0.032 4.032 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.066 4.066 26 H 0.259 0.741 27 H 0.021 0.979 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 -9.104 4.488 10.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.119 4.119 3 Si 0.709 3.291 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.590 4.590 8 H 0.078 0.922 9 C 0.190 3.810 10 H 0.034 0.966 11 O -0.278 6.278 12 C 0.004 3.996 13 C -0.113 4.113 14 C -0.119 4.119 15 C -0.102 4.102 16 C -0.194 4.194 17 C -0.074 4.074 18 N -0.194 5.194 19 C -0.054 4.054 20 C -0.033 4.033 21 C -0.149 4.149 22 C -0.159 4.159 23 C -0.169 4.169 24 C -0.162 4.162 25 C -0.084 4.084 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.253 -8.396 5.140 10.099 hybrid contribution 0.521 0.441 -0.829 1.074 sum -1.732 -7.955 4.311 9.212 Atomic orbital electron populations 1.70010 1.05747 1.26035 1.45428 1.24919 0.94672 0.98783 0.93517 0.86709 0.80518 0.84095 0.77728 1.19733 1.20796 1.20863 1.21387 0.93885 0.91106 1.52661 0.92237 1.18523 0.84814 0.94694 0.82946 0.96630 1.88006 1.37295 1.79309 1.23180 1.21951 0.95050 0.94861 0.87728 1.20442 0.98837 1.01434 0.90563 1.20990 0.98978 0.94418 0.97490 1.21560 0.96807 0.94544 0.97259 1.22104 1.01305 1.01194 0.94802 1.22690 0.96436 0.89441 0.98841 1.67685 1.15384 1.12506 1.23859 1.22800 0.93881 1.00720 0.88024 1.20173 0.93355 0.93629 0.96100 1.20804 0.99320 1.01884 0.92902 1.20776 0.95924 1.02798 0.96380 1.20822 0.95477 1.02596 0.97989 1.21145 0.99391 1.01646 0.94039 1.21471 0.95620 0.94669 0.96639 0.93074 0.96086 0.93994 0.89656 0.90642 0.84880 0.85112 0.83208 0.82536 0.87541 0.87784 0.88031 0.87808 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.29 9.54 55.43 0.53 -21.76 16 2 C 0.09 2.34 5.22 -17.82 -0.09 2.25 16 3 Si 0.88 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.55 -14.64 8.85 -34.44 -0.30 -14.95 16 8 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 9 C 0.25 5.99 2.56 -29.03 -0.07 5.91 16 10 H 0.02 0.37 7.73 -51.93 -0.40 -0.03 16 11 O -0.36 -8.43 7.82 -35.23 -0.28 -8.71 16 12 C 0.08 1.59 5.72 37.16 0.21 1.81 16 13 C -0.07 -1.20 5.74 -27.88 -0.16 -1.36 16 14 C -0.12 -1.68 5.15 -104.48 -0.54 -2.21 16 15 C -0.08 -0.94 9.86 -39.28 -0.39 -1.33 16 16 C -0.17 -1.91 10.11 -39.44 -0.40 -2.31 16 17 C 0.08 0.99 11.18 -17.55 -0.20 0.80 16 18 N -0.49 -7.14 10.36 -13.25 -0.14 -7.27 16 19 C 0.10 1.52 10.86 -17.55 -0.19 1.32 16 20 C -0.03 -0.75 4.83 -104.62 -0.50 -1.25 16 21 C -0.13 -2.75 9.70 -39.58 -0.38 -3.14 16 22 C -0.14 -2.66 10.05 -39.58 -0.40 -3.05 16 23 C -0.15 -2.82 10.05 -39.58 -0.40 -3.21 16 24 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 25 C -0.07 -1.52 8.08 -39.58 -0.32 -1.84 16 26 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 30 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.15 3.73 5.98 -52.48 -0.31 3.41 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -28.84 333.33 -9.74 -38.58 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.33 Total: 4.35 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -4.53 Total: -25.88 kcal Atomic # 7 Polarization: -29.42 SS G_CDS: 0.39 Total: -29.03 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.28 Total: -8.71 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.84 -9.74 -38.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224968174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.185 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds