Wall clock time and date at job start Tue Mar 31 2020 05:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38827 * 120.75667 * 2 1 4 4 C 1.38056 * 119.29056 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.58328 * 179.97438 * 4 3 2 6 6 N 1.31968 * 120.83131 * 359.74871 * 4 3 2 7 7 C 1.32246 * 121.64531 * 0.51955 * 6 4 3 8 8 O 1.35679 * 119.68256 * 179.75556 * 7 6 4 9 9 C 1.42910 * 116.99770 * 4.92712 * 8 7 6 10 10 H 1.08998 * 109.46856 * 35.22822 * 9 8 7 11 11 C 1.50697 * 109.46979 * 275.22512 * 9 8 7 12 12 H 1.08006 * 119.99882 * 305.18420 * 11 9 8 13 13 C 1.37870 * 120.00075 * 125.19086 * 11 9 8 14 14 N 1.31521 * 120.00381 * 188.16756 * 13 11 9 15 15 Si 1.86803 * 119.99886 * 8.15789 * 13 11 9 16 16 H 1.48496 * 109.47299 * 265.59562 * 15 13 11 17 17 H 1.48499 * 109.47083 * 25.59916 * 15 13 11 18 18 H 1.48505 * 109.46702 * 145.59438 * 15 13 11 19 19 C 1.50697 * 109.46616 * 155.22701 * 9 8 7 20 20 C 1.38233 * 120.00569 * 35.32498 * 19 9 8 21 21 C 1.38239 * 119.99783 * 179.80938 * 20 19 9 22 22 C 1.38229 * 119.99989 * 0.39837 * 21 20 19 23 23 C 1.38231 * 120.00392 * 359.85885 * 22 21 20 24 24 C 1.38238 * 119.99853 * 359.95039 * 23 22 21 25 25 C 1.38376 * 120.76085 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47620 * 269.97988 * 1 2 3 27 27 H 1.08997 * 109.46813 * 29.98004 * 1 2 3 28 28 H 1.08998 * 109.47030 * 149.97868 * 1 2 3 29 29 H 1.07995 * 120.35920 * 0.04169 * 3 2 1 30 30 H 1.08996 * 109.46498 * 95.61217 * 5 4 3 31 31 H 1.08999 * 109.46864 * 215.61137 * 5 4 3 32 32 H 1.08998 * 109.47456 * 335.61198 * 5 4 3 33 33 H 0.97001 * 120.00093 * 179.97438 * 14 13 11 34 34 H 1.08002 * 119.99648 * 359.97438 * 20 19 9 35 35 H 1.08003 * 119.99589 * 180.22811 * 21 20 19 36 36 H 1.08006 * 119.99682 * 179.83020 * 22 21 20 37 37 H 1.08002 * 120.00114 * 179.97438 * 23 22 21 38 38 H 1.07995 * 119.99960 * 180.02562 * 24 23 22 39 39 H 1.08005 * 120.44099 * 359.95845 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1930 0.0000 4 6 3.5970 1.1577 -0.0005 5 6 4.3743 2.4488 -0.0011 6 7 4.2442 0.0076 0.0039 7 6 3.6033 -1.1492 -0.0012 8 8 4.3088 -2.3082 -0.0013 9 6 5.7293 -2.2029 0.1135 10 1 5.9801 -1.3678 0.7676 11 6 6.3276 -1.9705 -1.2499 12 1 6.1135 -2.6551 -2.0574 13 6 7.1485 -0.8842 -1.4665 14 7 7.5407 -0.5891 -2.6867 15 14 7.7034 0.1689 -0.0268 16 1 6.7844 1.3255 0.1237 17 1 7.6850 -0.6431 1.2164 18 1 9.0821 0.6612 -0.2762 19 6 6.2822 -3.4791 0.6939 20 6 5.7035 -4.6925 0.3720 21 6 6.2132 -5.8634 0.9013 22 6 7.2964 -5.8201 1.7589 23 6 7.8718 -4.6063 2.0851 24 6 7.3646 -3.4357 1.5527 25 6 2.2147 -1.1891 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6953 2.1386 0.0007 30 1 4.6482 2.7083 1.0214 31 1 5.2772 2.3289 -0.5999 32 1 3.7597 3.2427 -0.4254 33 1 8.1179 0.1754 -2.8391 34 1 4.8548 -4.7259 -0.2952 35 1 5.7633 -6.8117 0.6468 36 1 7.6928 -6.7347 2.1746 37 1 8.7178 -4.5725 2.7555 38 1 7.8144 -2.4874 1.8071 39 1 1.6944 -2.1356 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227247697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:34 Heat of formation + Delta-G solvation = 17.740920 kcal Electronic energy + Delta-G solvation = -21940.885068 eV Core-core repulsion = 18813.577420 eV Total energy + Delta-G solvation = -3127.307648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02455 -38.67006 -37.02103 -33.71518 -33.03204 -31.65327 -30.69977 -30.22342 -27.89311 -27.14545 -26.73008 -23.32179 -22.20773 -21.66100 -21.06048 -19.84076 -17.24033 -16.99640 -16.53679 -15.80295 -15.44231 -14.90244 -14.55313 -14.10852 -14.08466 -13.37829 -13.29837 -13.12201 -13.01303 -12.83631 -12.75290 -12.48823 -12.23234 -12.14997 -11.88581 -11.61172 -11.35365 -11.16455 -10.99036 -10.65159 -10.46969 -9.86500 -9.67797 -9.37652 -8.99606 -8.74939 -8.62379 -8.28996 -7.97574 -7.60417 -6.21707 -4.26151 1.70320 1.88341 2.02855 2.05605 3.29630 3.34811 3.39666 3.97260 4.34374 4.38204 4.49659 4.82380 4.96893 5.17304 5.31766 5.47965 5.51384 5.53288 5.60661 5.61987 5.66646 5.71506 5.89501 5.92274 5.94325 6.07837 6.10566 6.19090 6.28861 6.40723 6.50346 6.54914 6.66757 6.72225 6.74456 7.05237 7.07920 7.15021 7.41092 7.43459 7.66526 8.18837 8.39891 8.68729 8.86759 9.41580 10.88801 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.007030 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.223910 B = 3981.948378 C = 5215.786377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.015 4.015 3 C -0.235 4.235 4 C 0.172 3.828 5 C -0.108 4.108 6 N -0.521 5.521 7 C 0.365 3.635 8 O -0.314 6.314 9 C 0.213 3.787 10 H 0.062 0.938 11 C -0.522 4.522 12 H 0.078 0.922 13 C 0.097 3.903 14 N -0.878 5.878 15 Si 0.879 3.121 16 H -0.250 1.250 17 H -0.267 1.267 18 H -0.296 1.296 19 C -0.036 4.036 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.145 4.145 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.219 4.219 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.267 0.733 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 0.694 8.288 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.023 4.023 3 C -0.256 4.256 4 C 0.034 3.966 5 C -0.165 4.165 6 N -0.246 5.246 7 C 0.185 3.815 8 O -0.220 6.220 9 C 0.160 3.840 10 H 0.079 0.921 11 C -0.558 4.558 12 H 0.096 0.904 13 C -0.109 4.109 14 N -0.514 5.514 15 Si 0.707 3.293 16 H -0.175 1.175 17 H -0.192 1.192 18 H -0.223 1.223 19 C -0.036 4.036 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.164 4.164 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.240 4.240 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.143 0.857 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.500 0.499 8.151 11.088 hybrid contribution -0.175 0.599 0.397 0.740 sum -7.676 1.098 8.548 11.541 Atomic orbital electron populations 1.20742 0.90655 1.02871 1.02334 1.19920 0.95953 0.92294 0.94100 1.21446 0.94491 0.98054 1.11576 1.20882 0.90807 0.93077 0.91807 1.20837 1.00698 0.92133 1.02823 1.67281 1.40787 0.97680 1.18883 1.19735 0.88461 0.85500 0.87776 1.86226 1.24417 1.26375 1.85017 1.19340 0.75333 0.91648 0.97727 0.92059 1.21004 1.29905 1.11201 0.93720 0.90422 1.24972 0.94533 0.95761 0.95660 1.69939 1.33804 1.27424 1.20262 0.86904 0.77292 0.82274 0.82789 1.17490 1.19250 1.22339 1.20128 0.95049 0.95628 0.92809 1.20964 1.00092 0.91712 0.99699 1.21043 0.97122 0.97763 0.98335 1.20907 0.97852 0.97203 1.00400 1.20944 0.99834 0.92639 1.00586 1.21008 0.97249 0.98381 0.97749 1.20860 0.91903 0.98979 1.12299 0.90960 0.91352 0.91265 0.85747 0.90954 0.89896 0.91180 0.92333 0.86095 0.86928 0.87094 0.86869 0.86424 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.06 36.00 0.36 -0.83 16 2 C -0.02 -0.24 5.91 -104.35 -0.62 -0.86 16 3 C -0.24 -3.73 9.42 -39.43 -0.37 -4.10 16 4 C 0.17 3.25 6.78 -82.60 -0.56 2.69 16 5 C -0.11 -1.73 9.81 36.01 0.35 -1.38 16 6 N -0.52 -11.76 7.58 -9.55 -0.07 -11.83 16 7 C 0.36 8.09 7.36 -17.12 -0.13 7.96 16 8 O -0.31 -7.47 8.93 -18.74 -0.17 -7.64 16 9 C 0.21 5.31 1.93 -29.04 -0.06 5.25 16 10 H 0.06 1.56 3.79 -51.93 -0.20 1.36 16 11 C -0.52 -14.89 8.94 -34.44 -0.31 -15.20 16 12 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 13 C 0.10 2.76 5.47 -17.82 -0.10 2.67 16 14 N -0.88 -26.45 13.96 55.43 0.77 -25.68 16 15 Si 0.88 21.49 26.16 -169.99 -4.45 17.04 16 16 H -0.25 -5.75 5.14 56.52 0.29 -5.46 16 17 H -0.27 -6.25 4.81 56.52 0.27 -5.98 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 19 C -0.04 -0.81 4.98 -104.62 -0.52 -1.33 16 20 C -0.11 -2.18 9.35 -39.58 -0.37 -2.55 16 21 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 22 C -0.15 -2.38 10.05 -39.59 -0.40 -2.78 16 23 C -0.12 -2.14 10.05 -39.58 -0.40 -2.53 16 24 C -0.13 -2.61 9.68 -39.58 -0.38 -3.00 16 25 C -0.22 -3.98 9.75 -39.28 -0.38 -4.36 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.07 0.70 8.10 -51.93 -0.42 0.27 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.53 6.65 -51.93 -0.35 1.19 16 32 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 34 H 0.12 2.45 7.64 -52.49 -0.40 2.05 16 35 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.12 2.45 6.33 -52.49 -0.33 2.12 16 39 H 0.13 2.11 8.06 -52.48 -0.42 1.68 16 LS Contribution 324.83 15.07 4.90 4.90 Total: -1.00 -31.76 324.83 -8.58 -40.35 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.29 Total: 5.76 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -4.27 Total: -22.90 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.70 Total: -37.50 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.17 Total: -7.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.45 Total: 17.04 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.76 -8.58 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227247697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.086 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds