Wall clock time and date at job start Tue Mar 31 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38580 * 120.81471 * 2 1 4 4 C 1.38209 * 119.21930 * 179.77363 * 3 2 1 5 5 N 1.31869 * 120.89003 * 0.51959 * 4 3 2 6 6 C 1.31815 * 121.78503 * 359.72982 * 5 4 3 7 7 C 1.50698 * 119.66443 * 180.02562 * 6 5 4 8 8 C 1.38748 * 120.67576 * 0.02562 * 6 5 4 9 9 O 1.35915 * 120.47367 * 179.97438 * 8 6 5 10 10 C 1.42895 * 117.00362 * 270.02071 * 9 8 6 11 11 H 1.09001 * 109.46809 * 330.00317 * 10 9 8 12 12 C 1.50706 * 109.47028 * 89.99634 * 10 9 8 13 13 H 1.07998 * 119.99854 * 240.00204 * 12 10 9 14 14 C 1.37878 * 119.99955 * 60.00286 * 12 10 9 15 15 N 1.31513 * 119.99518 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00082 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46829 * 60.00252 * 16 14 12 18 18 H 1.48496 * 109.47111 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47113 * 300.00293 * 16 14 12 20 20 C 1.50699 * 109.47564 * 209.99825 * 10 9 8 21 21 C 1.38240 * 119.99676 * 324.72691 * 20 10 9 22 22 C 1.38233 * 119.99792 * 179.80649 * 21 20 10 23 23 C 1.38237 * 120.00181 * 0.40034 * 22 21 20 24 24 C 1.38243 * 119.99611 * 359.85331 * 23 22 21 25 25 C 1.38229 * 120.00205 * 359.95608 * 24 23 22 26 26 H 1.08999 * 109.47015 * 269.71969 * 1 2 3 27 27 H 1.09000 * 109.46646 * 29.71121 * 1 2 3 28 28 H 1.09000 * 109.47248 * 149.71839 * 1 2 3 29 29 H 1.07995 * 120.38600 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.55039 * 180.23253 * 4 3 2 31 31 H 1.09000 * 109.47045 * 269.98492 * 7 6 5 32 32 H 1.09002 * 109.46679 * 29.98366 * 7 6 5 33 33 H 1.08994 * 109.47267 * 149.97917 * 7 6 5 34 34 H 0.97002 * 119.99626 * 180.02562 * 15 14 12 35 35 H 1.07998 * 119.99966 * 359.97438 * 21 20 10 36 36 H 1.08002 * 120.00143 * 180.22713 * 22 21 20 37 37 H 1.07995 * 120.00282 * 179.83422 * 23 22 21 38 38 H 1.07994 * 119.99820 * 179.97438 * 24 23 22 39 39 H 1.07993 * 120.00123 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2170 1.1902 0.0000 4 6 3.5985 1.1517 0.0048 5 7 4.2438 0.0017 -0.0010 6 6 3.6064 -1.1521 -0.0061 7 6 4.3919 -2.4381 -0.0120 8 6 2.2195 -1.1946 -0.0062 9 8 1.5665 -2.3866 -0.0121 10 6 1.2550 -2.9495 -1.2880 11 1 1.1064 -2.1484 -2.0120 12 6 2.3917 -3.8300 -1.7396 13 1 2.9130 -3.6096 -2.6594 14 6 2.7661 -4.9170 -0.9785 15 7 2.1309 -5.1856 0.1413 16 14 4.1745 -6.0088 -1.5385 17 1 5.4157 -5.2003 -1.6442 18 1 4.3776 -7.0998 -0.5518 19 1 3.8503 -6.5938 -2.8643 20 6 -0.0043 -3.7703 -1.1812 21 6 -0.2677 -4.4850 -0.0277 22 6 -1.4248 -5.2347 0.0719 23 6 -2.3146 -5.2762 -0.9853 24 6 -2.0486 -4.5656 -2.1408 25 6 -0.8934 -3.8128 -2.2389 26 1 -0.3633 -0.0050 1.0276 27 1 -0.3632 0.8926 -0.5094 28 1 -0.3634 -0.8874 -0.5182 29 1 1.6967 2.1365 0.0004 30 1 4.1571 2.0760 0.0086 31 1 4.5810 -2.7437 -1.0411 32 1 5.3409 -2.2865 0.5022 33 1 3.8220 -3.2143 0.4987 34 1 2.3945 -5.9501 0.6770 35 1 0.4293 -4.4556 0.7968 36 1 -1.6324 -5.7902 0.9745 37 1 -3.2173 -5.8641 -0.9086 38 1 -2.7435 -4.5984 -2.9669 39 1 -0.6854 -3.2580 -3.1418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227266232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:36 Heat of formation + Delta-G solvation = 24.301866 kcal Electronic energy + Delta-G solvation = -22681.916078 eV Core-core repulsion = 19554.892934 eV Total energy + Delta-G solvation = -3127.023144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.92612 -38.30172 -36.59478 -33.67779 -32.89735 -31.24276 -30.25180 -29.65312 -27.39476 -27.21263 -26.02336 -23.34177 -21.97294 -21.34109 -20.54791 -20.23961 -17.27001 -16.58140 -16.01644 -15.77897 -15.20690 -14.84088 -14.53272 -13.83541 -13.67707 -13.26790 -12.96294 -12.83057 -12.65445 -12.41513 -12.32863 -12.04512 -11.78824 -11.56787 -11.48816 -11.37194 -11.17392 -11.04808 -10.74880 -10.56441 -10.35506 -10.00167 -9.51434 -9.17884 -8.83295 -8.72528 -8.26555 -7.93278 -7.80536 -7.52317 -6.09897 -4.40623 1.70129 1.80618 2.39852 2.55243 3.19142 3.24442 3.27859 4.21308 4.22316 4.79371 4.93757 5.05635 5.14300 5.22794 5.28595 5.62253 5.75613 5.82769 5.88431 5.92546 5.99320 6.06275 6.21437 6.26133 6.36983 6.46414 6.50826 6.67546 6.69126 6.80078 6.81841 6.92801 7.02354 7.06021 7.22883 7.40872 7.46772 7.53380 7.75200 7.90437 7.97841 8.21347 8.46577 8.62776 8.93252 9.31657 10.73118 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.008555 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.660339 B = 3272.283933 C = 4818.595889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.087 4.087 3 C -0.177 4.177 4 C 0.069 3.931 5 N -0.486 5.486 6 C 0.122 3.878 7 C -0.094 4.094 8 C 0.090 3.910 9 O -0.315 6.315 10 C 0.254 3.746 11 H 0.019 0.981 12 C -0.537 4.537 13 H 0.063 0.937 14 C 0.090 3.910 15 N -0.843 5.843 16 Si 0.883 3.117 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.276 1.276 20 C -0.043 4.043 21 C -0.044 4.044 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.148 4.148 25 C -0.128 4.128 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.266 0.734 35 H 0.165 0.835 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.560 5.865 0.273 6.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 C -0.197 4.197 4 C -0.087 4.087 5 N -0.198 5.198 6 C -0.017 4.017 7 C -0.152 4.152 8 C 0.042 3.958 9 O -0.231 6.231 10 C 0.202 3.798 11 H 0.037 0.963 12 C -0.573 4.573 13 H 0.081 0.919 14 C -0.116 4.116 15 N -0.477 5.477 16 Si 0.709 3.291 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.201 1.201 20 C -0.043 4.043 21 C -0.063 4.063 22 C -0.171 4.171 23 C -0.162 4.162 24 C -0.167 4.167 25 C -0.146 4.146 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.162 0.838 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.182 0.818 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.733 5.587 0.569 6.246 hybrid contribution -0.159 -0.632 -0.646 0.917 sum -2.892 4.955 -0.077 5.738 Atomic orbital electron populations 1.20625 0.90530 1.02646 1.02392 1.20738 0.97059 0.92887 0.98787 1.21772 0.95350 0.97693 1.04881 1.22423 0.91592 0.95888 0.98802 1.67476 1.41098 0.97989 1.13251 1.21841 0.91405 0.93896 0.94509 1.20830 0.97895 0.92786 1.03650 1.19467 0.90995 0.87068 0.98269 1.86189 1.74428 1.30068 1.32425 1.18806 0.90909 0.90214 0.79900 0.96292 1.21364 1.16107 1.11453 1.08402 0.91859 1.24937 0.95995 0.96233 0.94457 1.69802 1.37684 1.27465 1.12774 0.86816 0.82982 0.80414 0.78873 1.19405 1.20828 1.20100 1.19867 0.92811 0.98214 0.93433 1.21874 0.93017 0.91364 1.00061 1.21159 0.95960 1.01854 0.98107 1.20841 0.99445 1.01179 0.94739 1.20697 0.97951 1.00334 0.97691 1.20767 0.94602 1.00919 0.98327 0.91136 0.92143 0.90663 0.85829 0.83769 0.90056 0.93376 0.88070 0.92312 0.81769 0.87971 0.88229 0.87955 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 9.86 36.01 0.36 -1.30 16 2 C -0.09 -1.58 5.93 -104.17 -0.62 -2.19 16 3 C -0.18 -2.80 9.81 -39.47 -0.39 -3.19 16 4 C 0.07 1.15 11.18 -17.55 -0.20 0.95 16 5 N -0.49 -9.64 10.27 -9.35 -0.10 -9.73 16 6 C 0.12 2.60 6.80 -82.41 -0.56 2.04 16 7 C -0.09 -2.02 8.23 36.00 0.30 -1.72 16 8 C 0.09 1.91 5.53 -39.07 -0.22 1.69 16 9 O -0.32 -7.23 6.68 -19.47 -0.13 -7.36 16 10 C 0.25 5.88 2.06 -29.03 -0.06 5.83 16 11 H 0.02 0.44 7.82 -51.93 -0.41 0.03 16 12 C -0.54 -13.17 6.50 -34.44 -0.22 -13.40 16 13 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 14 C 0.09 2.19 3.43 -17.82 -0.06 2.13 16 15 N -0.84 -20.61 8.29 55.43 0.46 -20.15 16 16 Si 0.88 19.44 29.54 -169.99 -5.02 14.42 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.04 -0.96 4.80 -104.62 -0.50 -1.46 16 21 C -0.04 -0.99 7.46 -39.58 -0.30 -1.29 16 22 C -0.15 -3.03 10.05 -39.58 -0.40 -3.43 16 23 C -0.14 -2.65 10.05 -39.58 -0.40 -3.05 16 24 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 25 C -0.13 -2.61 9.68 -39.59 -0.38 -2.99 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 28 H 0.07 1.32 7.10 -51.93 -0.37 0.95 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 31 H 0.08 1.79 7.10 -51.93 -0.37 1.42 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 2.34 5.82 -51.93 -0.30 2.04 16 34 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 35 H 0.17 3.97 5.50 -52.49 -0.29 3.69 16 36 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -25.92 319.70 -9.10 -35.02 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.08 Total: 7.52 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -4.04 Total: -24.53 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.36 Total: -29.88 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.13 Total: -7.36 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.92 -9.10 -35.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227266232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.318 kcal (2) G-P(sol) polarization free energy of solvation -25.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds