Wall clock time and date at job start Tue Mar 31 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38825 * 120.35767 * 2 1 4 4 C 1.38377 * 118.48437 * 179.97438 * 3 2 1 5 5 C 1.38922 * 119.11347 * 359.97438 * 4 3 2 6 6 O 1.35680 * 119.68615 * 179.97438 * 5 4 3 7 7 C 1.42897 * 116.99793 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47515 * 30.00486 * 7 6 5 9 9 C 1.50697 * 109.47631 * 269.99892 * 7 6 5 10 10 H 1.08002 * 120.00162 * 125.45857 * 9 7 6 11 11 C 1.37879 * 119.99981 * 305.46838 * 9 7 6 12 12 N 1.31513 * 119.99890 * 8.48129 * 11 9 7 13 13 Si 1.86802 * 119.99971 * 188.47260 * 11 9 7 14 14 H 1.48500 * 109.46690 * 89.99831 * 13 11 9 15 15 H 1.48495 * 109.47015 * 210.00252 * 13 11 9 16 16 H 1.48504 * 109.46986 * 330.00466 * 13 11 9 17 17 C 1.50704 * 109.46838 * 149.99901 * 7 6 5 18 18 C 1.38237 * 120.00059 * 29.33152 * 17 7 6 19 19 C 1.38232 * 120.00063 * 180.02562 * 18 17 7 20 20 C 1.38225 * 120.00337 * 0.06697 * 19 18 17 21 21 C 1.38236 * 119.99812 * 359.97438 * 20 19 18 22 22 C 1.38236 * 120.00024 * 209.45617 * 17 7 6 23 23 N 1.32250 * 120.62877 * 0.25671 * 5 4 3 24 24 C 1.31962 * 121.64459 * 359.47713 * 23 5 4 25 25 C 1.50706 * 119.57870 * 180.26635 * 24 23 5 26 26 H 1.08993 * 109.47378 * 89.99196 * 1 2 3 27 27 H 1.08995 * 109.47111 * 209.99833 * 1 2 3 28 28 H 1.09003 * 109.46707 * 329.99297 * 1 2 3 29 29 H 1.07995 * 120.76026 * 359.96468 * 3 2 1 30 30 H 1.07996 * 120.44681 * 179.97438 * 4 3 2 31 31 H 0.96997 * 119.99949 * 180.02562 * 12 11 9 32 32 H 1.08007 * 119.99863 * 0.09936 * 18 17 7 33 33 H 1.08003 * 119.99456 * 180.34148 * 19 18 17 34 34 H 1.08001 * 120.00511 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00036 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.99810 * 359.97438 * 22 17 7 37 37 H 1.08992 * 109.47147 * 270.24844 * 25 24 23 38 38 H 1.08996 * 109.47030 * 30.25280 * 25 24 23 39 39 H 1.09007 * 109.46878 * 150.25202 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1979 0.0000 4 6 3.5917 1.1527 0.0005 5 6 4.2275 -0.0825 0.0016 6 8 5.5831 -0.1404 0.0016 7 6 6.1769 -1.4402 0.0022 8 1 5.5184 -2.1407 -0.5114 9 6 6.3857 -1.8966 1.4231 10 1 5.9801 -2.8420 1.7518 11 6 7.0943 -1.1070 2.3037 12 7 7.4441 0.1128 1.9581 13 14 7.5574 -1.7698 3.9877 14 1 8.8810 -2.4385 3.9095 15 1 7.6257 -0.6487 4.9592 16 1 6.5337 -2.7490 4.4329 17 6 7.5048 -1.3860 -0.7083 18 6 8.2457 -0.2190 -0.7007 19 6 9.4635 -0.1692 -1.3529 20 6 9.9398 -1.2859 -2.0138 21 6 9.1986 -2.4526 -2.0221 22 6 7.9808 -2.5026 -1.3698 23 7 3.5242 -1.2024 -0.0030 24 6 2.2046 -1.1913 0.0015 25 6 1.4496 -2.4956 0.0020 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6870 2.1435 -0.0006 30 1 4.1691 2.0653 0.0001 31 1 7.9430 0.6681 2.5775 32 1 7.8736 0.6535 -0.1842 33 1 10.0449 0.7410 -1.3422 34 1 10.8911 -1.2469 -2.5236 35 1 9.5705 -3.3250 -2.5388 36 1 7.4012 -3.4138 -1.3771 37 1 1.2680 -2.8106 -1.0254 38 1 2.0376 -3.2555 0.5166 39 1 0.4971 -2.3638 0.5155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228299178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:34 Heat of formation + Delta-G solvation = 21.115509 kcal Electronic energy + Delta-G solvation = -21910.697200 eV Core-core repulsion = 18783.535885 eV Total energy + Delta-G solvation = -3127.161315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.88023 -38.36651 -36.79486 -33.30136 -32.47840 -32.12565 -30.58344 -29.81983 -27.97620 -26.98148 -25.58485 -23.24554 -21.97074 -21.59531 -20.87292 -20.12755 -17.51083 -16.36752 -16.13714 -15.48780 -14.92486 -14.56774 -14.43888 -14.15042 -13.82722 -13.47423 -13.28107 -13.15885 -12.63687 -12.44903 -12.39421 -12.25934 -12.14107 -11.70304 -11.65737 -11.50811 -11.02258 -10.98857 -10.92367 -10.49903 -10.45471 -10.08661 -9.55958 -9.25777 -9.05652 -8.68217 -8.62793 -7.93320 -7.61199 -7.29689 -6.11040 -4.26970 1.84019 2.01357 2.34991 2.45420 3.24726 3.31376 3.34543 4.29312 4.32613 4.51274 4.82484 4.94616 5.16615 5.20460 5.31018 5.44800 5.70041 5.72272 5.74946 5.85122 5.91489 5.92125 6.02294 6.05124 6.10736 6.13832 6.31160 6.47304 6.57298 6.62110 6.67168 6.82780 6.90122 6.99941 7.09712 7.26098 7.39632 7.55502 7.77218 7.87420 8.01255 8.09625 8.50234 8.75547 8.94692 9.44051 10.87301 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.006064 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.709665 B = 4616.487215 C = 5414.878404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.216 4.216 3 C -0.044 4.044 4 C -0.214 4.214 5 C 0.362 3.638 6 O -0.272 6.272 7 C 0.243 3.757 8 H 0.053 0.947 9 C -0.534 4.534 10 H 0.067 0.933 11 C 0.081 3.919 12 N -0.846 5.846 13 Si 0.890 3.110 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.037 4.037 18 C -0.070 4.070 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.139 4.139 22 C -0.125 4.125 23 N -0.532 5.532 24 C 0.166 3.834 25 C -0.105 4.105 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.263 0.737 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.377 0.332 -5.336 9.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.219 4.219 3 C -0.069 4.069 4 C -0.235 4.235 5 C 0.182 3.818 6 O -0.176 6.176 7 C 0.189 3.811 8 H 0.071 0.929 9 C -0.570 4.570 10 H 0.085 0.915 11 C -0.126 4.126 12 N -0.480 5.480 13 Si 0.717 3.283 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.038 4.038 18 C -0.089 4.089 19 C -0.160 4.160 20 C -0.166 4.166 21 C -0.157 4.157 22 C -0.143 4.143 23 N -0.258 5.258 24 C 0.028 3.972 25 C -0.162 4.162 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.073 0.927 32 H 0.165 0.835 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.564 -0.078 -5.275 8.422 hybrid contribution 0.164 0.333 1.186 1.243 sum -6.400 0.255 -4.089 7.599 Atomic orbital electron populations 1.20574 0.91275 1.02046 1.01352 1.20246 0.96615 0.93637 1.11411 1.21054 0.93023 0.97473 0.95333 1.21029 0.94328 0.97419 1.10771 1.19995 0.86266 0.88616 0.86954 1.86488 1.11876 1.35741 1.83514 1.18881 0.86923 0.79780 0.95517 0.92894 1.21261 1.35458 1.06149 0.94164 0.91528 1.25024 0.94573 0.94455 0.98557 1.69963 1.35696 1.06716 1.35643 0.86620 0.79136 0.78837 0.83667 1.20336 1.21089 1.19735 1.20095 0.97904 0.93062 0.92739 1.21481 0.92940 0.99820 0.94619 1.21122 0.97342 0.97735 0.99784 1.20841 0.99475 0.94091 1.02224 1.20789 0.95664 0.97457 1.01786 1.20774 0.96599 0.98083 0.98820 1.67292 1.07794 1.30844 1.19829 1.20695 0.88887 0.94495 0.93109 1.20748 0.99030 0.93966 1.02440 0.92210 0.91705 0.92433 0.85580 0.85031 0.92744 0.83471 0.87671 0.87875 0.87572 0.87228 0.90940 0.90632 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 9.62 36.01 0.35 -0.74 16 2 C -0.22 -3.42 5.90 -104.47 -0.62 -4.04 16 3 C -0.04 -0.71 9.85 -39.31 -0.39 -1.10 16 4 C -0.21 -4.18 10.04 -39.28 -0.39 -4.57 16 5 C 0.36 8.30 7.45 -17.12 -0.13 8.17 16 6 O -0.27 -6.90 7.59 -18.74 -0.14 -7.04 16 7 C 0.24 6.16 2.33 -29.03 -0.07 6.09 16 8 H 0.05 1.34 6.92 -51.93 -0.36 0.98 16 9 C -0.53 -14.55 8.86 -34.44 -0.30 -14.85 16 10 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 11 C 0.08 2.19 5.22 -17.82 -0.09 2.10 16 12 N -0.85 -22.92 9.54 55.43 0.53 -22.40 16 13 Si 0.89 21.21 29.55 -169.99 -5.02 16.18 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.04 -0.90 4.82 -104.62 -0.50 -1.40 16 18 C -0.07 -1.64 8.08 -39.58 -0.32 -1.96 16 19 C -0.14 -2.88 10.05 -39.59 -0.40 -3.28 16 20 C -0.15 -2.77 10.05 -39.59 -0.40 -3.17 16 21 C -0.14 -2.63 10.05 -39.58 -0.40 -3.03 16 22 C -0.12 -2.66 9.71 -39.58 -0.38 -3.04 16 23 N -0.53 -11.67 8.56 -9.55 -0.08 -11.76 16 24 C 0.17 2.99 6.78 -82.60 -0.56 2.43 16 25 C -0.10 -1.45 9.77 36.01 0.35 -1.10 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.67 5.94 -51.93 -0.31 0.36 16 28 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 30 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.15 3.72 5.98 -52.48 -0.31 3.40 16 33 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.82 5.93 -51.92 -0.31 0.51 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -29.58 326.89 -9.11 -38.68 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.06 Total: 4.89 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -4.25 Total: -23.49 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.45 Total: -34.15 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.14 Total: -7.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.58 -9.11 -38.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228299178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.798 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds