Wall clock time and date at job start Tue Mar 31 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38226 * 119.61887 * 2 1 4 4 C 1.38624 * 119.15837 * 179.70685 * 3 2 1 5 5 C 1.38674 * 118.42364 * 0.51328 * 4 3 2 6 6 C 1.50698 * 120.42163 * 179.78438 * 5 4 3 7 7 H 1.08999 * 109.46877 * 339.72197 * 6 5 4 8 8 C 1.53001 * 109.47146 * 99.71788 * 6 5 4 9 9 O 1.42897 * 109.47120 * 219.71992 * 6 5 4 10 10 C 1.35647 * 116.99862 * 155.87520 * 9 6 5 11 11 C 1.38450 * 120.26616 * 5.36172 * 10 9 6 12 12 C 1.38299 * 120.04611 * 180.25903 * 11 10 9 13 13 C 1.38817 * 120.59775 * 359.74081 * 12 11 10 14 14 C 1.36489 * 120.53425 * 359.97438 * 13 12 11 15 15 C 1.40717 * 119.93328 * 0.02562 * 14 13 12 16 16 C 1.41149 * 120.29283 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00223 * 208.35383 * 16 15 14 18 18 C 1.39940 * 120.00246 * 28.36021 * 16 15 14 19 19 N 1.30860 * 120.00339 * 197.55963 * 18 16 15 20 20 Si 1.86800 * 119.99571 * 17.54893 * 18 16 15 21 21 H 1.48496 * 109.47301 * 270.00379 * 20 18 16 22 22 H 1.48500 * 109.47383 * 30.00557 * 20 18 16 23 23 H 1.48497 * 109.46928 * 150.00560 * 20 18 16 24 24 C 1.38179 * 119.16059 * 359.50960 * 5 4 3 25 25 N 1.31855 * 119.61643 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.46765 * 270.01979 * 1 2 3 27 27 H 1.09004 * 109.46908 * 30.01807 * 1 2 3 28 28 H 1.09001 * 109.47078 * 150.01708 * 1 2 3 29 29 H 1.07998 * 120.41777 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.79060 * 180.27381 * 4 3 2 31 31 H 1.08996 * 109.47339 * 179.97438 * 8 6 5 32 32 H 1.08996 * 109.47574 * 300.00321 * 8 6 5 33 33 H 1.08999 * 109.46899 * 60.00422 * 8 6 5 34 34 H 1.08004 * 119.97224 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.70373 * 179.71479 * 12 11 10 36 36 H 1.07997 * 119.73751 * 180.02562 * 13 12 11 37 37 H 1.08008 * 120.03238 * 180.02562 * 14 13 12 38 38 H 0.97006 * 119.99484 * 354.88985 * 19 18 16 39 39 H 1.07998 * 119.61826 * 180.25967 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 0.0062 5 6 4.2267 -0.0343 0.0013 6 6 5.7323 -0.0989 0.0028 7 1 6.1370 0.8503 -0.3485 8 6 6.2297 -0.3707 1.4239 9 8 6.1648 -1.1506 -0.8626 10 6 7.4160 -1.0498 -1.3766 11 6 8.2554 -0.0251 -0.9739 12 6 9.5283 0.0765 -1.5049 13 6 9.9798 -0.8456 -2.4392 14 6 9.1746 -1.8686 -2.8490 15 6 7.8753 -1.9933 -2.3233 16 6 7.0359 -3.0480 -2.7421 17 1 5.9633 -2.9214 -2.7313 18 6 7.5934 -4.2577 -3.1712 19 7 6.8744 -5.0977 -3.8712 20 14 9.3640 -4.6733 -2.7449 21 1 10.2624 -4.1666 -3.8131 22 1 9.7243 -4.0374 -1.4522 23 1 9.5128 -6.1464 -2.6304 24 6 3.4766 -1.1948 0.0007 25 7 2.1587 -1.1463 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6508 2.1373 -0.0004 30 1 4.1367 2.1138 0.0108 31 1 7.3186 -0.4179 1.4249 32 1 5.8998 0.4315 2.0840 33 1 5.8250 -1.3198 1.7752 34 1 7.9142 0.6981 -0.2478 35 1 10.1769 0.8807 -1.1902 36 1 10.9766 -0.7533 -2.8446 37 1 9.5343 -2.5817 -3.5761 38 1 5.9347 -4.9168 -4.0297 39 1 3.9754 -2.1527 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:25 Heat of formation + Delta-G solvation = 7.301150 kcal Electronic energy + Delta-G solvation = -21535.427060 eV Core-core repulsion = 18407.666710 eV Total energy + Delta-G solvation = -3127.760350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38169 -38.99495 -36.66654 -33.73320 -33.66555 -32.25108 -30.87831 -30.04610 -28.81717 -27.20511 -24.70957 -23.90525 -23.10564 -21.91684 -20.57854 -20.22774 -18.15491 -17.34686 -16.51114 -15.96554 -15.51062 -14.81267 -14.63619 -14.56045 -14.23014 -14.01467 -13.53630 -13.36297 -13.10328 -12.77402 -12.57505 -12.36897 -12.30656 -12.21717 -11.98400 -11.73328 -11.45565 -11.10028 -10.73004 -10.56953 -10.41853 -10.06818 -9.73709 -9.69786 -9.38493 -9.30211 -9.00209 -8.72672 -7.78671 -7.36067 -7.07714 -4.40329 1.12822 1.32206 2.58135 2.66844 3.22571 3.38777 3.57365 3.75418 4.02495 4.06114 4.34474 4.56668 4.71204 4.88131 5.01101 5.06996 5.30427 5.30620 5.41522 5.47083 5.47568 5.51852 5.72400 5.80346 5.86162 5.94270 5.98759 6.05420 6.13041 6.22527 6.27408 6.41953 6.60384 6.77368 6.84555 7.01021 7.43762 7.48408 7.63895 7.76451 7.93714 8.07379 8.17005 8.48367 8.63171 8.89455 10.07254 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.005036 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.148113 B = 5558.196558 C = 6609.817954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.119 3.881 3 C -0.177 4.177 4 C -0.065 4.065 5 C -0.133 4.133 6 C 0.129 3.871 7 H 0.073 0.927 8 C -0.171 4.171 9 O -0.295 6.295 10 C 0.021 3.979 11 C -0.168 4.168 12 C -0.221 4.221 13 C -0.098 4.098 14 C -0.232 4.232 15 C 0.086 3.914 16 C -0.496 4.496 17 H 0.080 0.920 18 C 0.040 3.960 19 N -0.818 5.818 20 Si 1.075 2.925 21 H -0.278 1.278 22 H -0.263 1.263 23 H -0.291 1.291 24 C 0.135 3.865 25 N -0.486 5.486 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.286 0.714 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 10.586 8.319 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.019 4.019 3 C -0.197 4.197 4 C -0.091 4.091 5 C -0.135 4.135 6 C 0.071 3.929 7 H 0.091 0.909 8 C -0.229 4.229 9 O -0.210 6.210 10 C -0.023 4.023 11 C -0.187 4.187 12 C -0.241 4.241 13 C -0.116 4.116 14 C -0.251 4.251 15 C 0.083 3.917 16 C -0.525 4.525 17 H 0.098 0.902 18 C -0.179 4.179 19 N -0.440 5.440 20 Si 0.902 3.098 21 H -0.205 1.205 22 H -0.188 1.188 23 H -0.219 1.219 24 C -0.021 4.021 25 N -0.196 5.196 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.541 8.460 8.004 12.897 hybrid contribution -0.668 2.278 0.192 2.382 sum -6.210 10.738 8.196 14.867 Atomic orbital electron populations 1.20691 0.89063 1.03355 1.02823 1.21340 0.97013 0.88597 0.94901 1.21837 0.94529 0.99171 1.04161 1.21381 0.94400 0.97496 0.95834 1.20728 0.95955 0.94530 1.02323 1.20789 0.89039 0.92185 0.90928 0.90879 1.22330 1.02637 1.02440 0.95458 1.86031 1.30161 1.43810 1.60995 1.19104 0.84415 1.00038 0.98723 1.20730 0.95779 0.98933 1.03287 1.20116 0.96454 1.02586 1.04929 1.20283 0.98008 0.95564 0.97760 1.20660 0.96202 1.02155 1.06059 1.17195 0.92252 0.92779 0.89478 1.20497 0.95949 0.97878 1.38181 0.90183 1.27274 1.07590 0.92837 0.90201 1.70542 1.10169 1.38940 1.24399 0.83563 0.72437 0.75176 0.78591 1.20467 1.18763 1.21859 1.22726 0.88514 0.98870 0.92031 1.67614 1.09998 1.29163 1.12789 0.90603 0.90910 0.90488 0.84936 0.84891 0.91006 0.91988 0.91540 0.88119 0.88840 0.88748 0.87201 0.90274 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.17 36.01 0.37 -0.62 16 2 C 0.12 1.60 6.78 -82.58 -0.56 1.04 16 3 C -0.18 -2.11 9.74 -39.44 -0.38 -2.50 16 4 C -0.07 -0.85 9.82 -39.28 -0.39 -1.23 16 5 C -0.13 -2.10 4.98 -104.48 -0.52 -2.62 16 6 C 0.13 2.15 2.45 -27.88 -0.07 2.09 16 7 H 0.07 1.17 6.26 -51.93 -0.33 0.84 16 8 C -0.17 -2.49 9.13 37.16 0.34 -2.15 16 9 O -0.30 -6.46 8.48 -18.64 -0.16 -6.62 16 10 C 0.02 0.50 6.63 -38.33 -0.25 0.25 16 11 C -0.17 -3.51 8.21 -39.48 -0.32 -3.84 16 12 C -0.22 -4.57 10.04 -39.34 -0.39 -4.97 16 13 C -0.10 -2.12 9.97 -40.00 -0.40 -2.52 16 14 C -0.23 -5.63 7.21 -39.28 -0.28 -5.91 16 15 C 0.09 2.24 5.16 -106.68 -0.55 1.69 16 16 C -0.50 -13.69 9.08 -37.84 -0.34 -14.03 16 17 H 0.08 2.34 7.87 -52.48 -0.41 1.93 16 18 C 0.04 1.07 5.42 -17.33 -0.09 0.97 16 19 N -0.82 -22.46 13.66 55.55 0.76 -21.70 16 20 Si 1.08 24.75 24.88 -169.99 -4.23 20.52 16 21 H -0.28 -6.03 6.43 56.52 0.36 -5.66 16 22 H -0.26 -6.02 7.01 56.52 0.40 -5.63 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.14 2.31 10.53 -17.55 -0.18 2.12 16 25 N -0.49 -8.00 10.27 -9.47 -0.10 -8.09 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.07 1.09 6.83 -51.93 -0.35 0.74 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.79 5.41 -52.48 -0.28 1.51 16 35 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.11 2.64 4.32 -52.48 -0.23 2.41 16 38 H 0.29 7.72 8.73 -40.82 -0.36 7.36 16 39 H 0.16 2.90 7.79 -52.49 -0.41 2.49 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -29.63 323.25 -7.91 -37.54 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.01 Total: 5.71 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -4.04 Total: -32.23 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 0.66 Total: -29.79 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.16 Total: -6.62 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -4.23 Total: 20.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.63 -7.91 -37.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.838 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds