Wall clock time and date at job start Tue Mar 31 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38226 * 119.61887 * 2 1 4 4 C 1.38624 * 119.15837 * 179.70685 * 3 2 1 5 5 C 1.38674 * 118.42364 * 0.51328 * 4 3 2 6 6 C 1.50698 * 120.42163 * 179.78438 * 5 4 3 7 7 H 1.08999 * 109.46877 * 339.72197 * 6 5 4 8 8 C 1.53001 * 109.47146 * 99.71788 * 6 5 4 9 9 O 1.42897 * 109.47120 * 219.71992 * 6 5 4 10 10 C 1.35647 * 116.99862 * 155.87520 * 9 6 5 11 11 C 1.38450 * 120.26616 * 5.36172 * 10 9 6 12 12 C 1.38299 * 120.04611 * 180.25903 * 11 10 9 13 13 C 1.38817 * 120.59775 * 359.74081 * 12 11 10 14 14 C 1.36489 * 120.53425 * 359.97438 * 13 12 11 15 15 C 1.40717 * 119.93328 * 0.02562 * 14 13 12 16 16 C 1.41149 * 120.29283 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00223 * 208.35383 * 16 15 14 18 18 C 1.39940 * 120.00246 * 28.36021 * 16 15 14 19 19 N 1.30860 * 120.00339 * 197.55963 * 18 16 15 20 20 Si 1.86800 * 119.99571 * 17.54893 * 18 16 15 21 21 H 1.48496 * 109.47301 * 270.00379 * 20 18 16 22 22 H 1.48500 * 109.47383 * 30.00557 * 20 18 16 23 23 H 1.48497 * 109.46928 * 150.00560 * 20 18 16 24 24 C 1.38179 * 119.16059 * 359.50960 * 5 4 3 25 25 N 1.31855 * 119.61643 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.46765 * 270.01979 * 1 2 3 27 27 H 1.09004 * 109.46908 * 30.01807 * 1 2 3 28 28 H 1.09001 * 109.47078 * 150.01708 * 1 2 3 29 29 H 1.07998 * 120.41777 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.79060 * 180.27381 * 4 3 2 31 31 H 1.08996 * 109.47339 * 179.97438 * 8 6 5 32 32 H 1.08996 * 109.47574 * 300.00321 * 8 6 5 33 33 H 1.08999 * 109.46899 * 60.00422 * 8 6 5 34 34 H 1.08004 * 119.97224 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.70373 * 179.71479 * 12 11 10 36 36 H 1.07997 * 119.73751 * 180.02562 * 13 12 11 37 37 H 1.08008 * 120.03238 * 180.02562 * 14 13 12 38 38 H 0.97006 * 119.99484 * 354.88985 * 19 18 16 39 39 H 1.07998 * 119.61826 * 180.25967 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 0.0062 5 6 4.2267 -0.0343 0.0013 6 6 5.7323 -0.0989 0.0028 7 1 6.1370 0.8503 -0.3485 8 6 6.2297 -0.3707 1.4239 9 8 6.1648 -1.1506 -0.8626 10 6 7.4160 -1.0498 -1.3766 11 6 8.2554 -0.0251 -0.9739 12 6 9.5283 0.0765 -1.5049 13 6 9.9798 -0.8456 -2.4392 14 6 9.1746 -1.8686 -2.8490 15 6 7.8753 -1.9933 -2.3233 16 6 7.0359 -3.0480 -2.7421 17 1 5.9633 -2.9214 -2.7313 18 6 7.5934 -4.2577 -3.1712 19 7 6.8744 -5.0977 -3.8712 20 14 9.3640 -4.6733 -2.7449 21 1 10.2624 -4.1666 -3.8131 22 1 9.7243 -4.0374 -1.4522 23 1 9.5128 -6.1464 -2.6304 24 6 3.4766 -1.1948 0.0007 25 7 2.1587 -1.1463 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6508 2.1373 -0.0004 30 1 4.1367 2.1138 0.0108 31 1 7.3186 -0.4179 1.4249 32 1 5.8998 0.4315 2.0840 33 1 5.8250 -1.3198 1.7752 34 1 7.9142 0.6981 -0.2478 35 1 10.1769 0.8807 -1.1902 36 1 10.9766 -0.7533 -2.8446 37 1 9.5343 -2.5817 -3.5761 38 1 5.9347 -4.9168 -4.0297 39 1 3.9754 -2.1527 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:24 Heat of formation + Delta-G solvation = -10.043893 kcal Electronic energy + Delta-G solvation = -21536.179198 eV Core-core repulsion = 18407.666710 eV Total energy + Delta-G solvation = -3128.512488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57813 -40.57040 -38.32189 -35.59861 -34.96103 -33.31704 -32.36990 -31.54108 -30.53093 -28.22841 -26.59892 -25.11504 -24.36545 -23.35130 -22.20527 -21.70904 -20.08892 -18.87978 -17.73013 -17.32265 -16.67683 -16.46926 -16.22219 -15.99992 -15.51891 -15.38195 -15.25302 -14.80748 -14.40980 -14.12855 -13.90254 -13.82872 -13.67319 -13.24094 -13.20901 -13.08269 -12.85098 -12.54756 -12.40858 -12.22512 -11.99542 -11.70335 -11.49791 -11.29749 -10.86967 -10.82053 -10.44870 -9.83576 -9.66069 -9.28532 -8.91510 -6.43942 0.02114 0.24881 0.77083 0.88144 1.35538 1.55105 1.75908 2.19729 2.47287 2.66797 2.76782 3.28050 3.47740 3.67414 3.77376 3.87448 3.99257 4.13528 4.21731 4.26393 4.40030 4.44378 4.50878 4.67783 4.68402 4.76219 4.77993 4.79496 4.84725 5.04165 5.10758 5.12951 5.17102 5.20641 5.30032 5.48894 5.64153 5.72187 5.74819 5.96730 6.10925 6.32290 6.49608 6.75646 6.96202 7.10875 8.02923 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.005036 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.148113 B = 5558.196558 C = 6609.817954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.106 3.894 3 C -0.164 4.164 4 C -0.061 4.061 5 C -0.149 4.149 6 C 0.123 3.877 7 H 0.090 0.910 8 C -0.164 4.164 9 O -0.326 6.326 10 C 0.015 3.985 11 C -0.170 4.170 12 C -0.192 4.192 13 C -0.111 4.111 14 C -0.234 4.234 15 C 0.048 3.952 16 C -0.533 4.533 17 H 0.034 0.966 18 C 0.003 3.997 19 N -0.853 5.853 20 Si 1.110 2.890 21 H -0.253 1.253 22 H -0.262 1.262 23 H -0.284 1.284 24 C 0.106 3.894 25 N -0.519 5.519 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.178 0.822 30 H 0.169 0.831 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.271 0.729 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 15.118 9.948 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.032 4.032 3 C -0.184 4.184 4 C -0.086 4.086 5 C -0.151 4.151 6 C 0.066 3.934 7 H 0.107 0.893 8 C -0.221 4.221 9 O -0.241 6.241 10 C -0.029 4.029 11 C -0.188 4.188 12 C -0.211 4.211 13 C -0.129 4.129 14 C -0.254 4.254 15 C 0.046 3.954 16 C -0.563 4.563 17 H 0.053 0.947 18 C -0.208 4.208 19 N -0.478 5.478 20 Si 0.931 3.069 21 H -0.178 1.178 22 H -0.187 1.187 23 H -0.211 1.211 24 C -0.050 4.050 25 N -0.229 5.229 26 H 0.111 0.889 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.195 0.805 30 H 0.187 0.813 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.082 0.918 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.052 13.011 9.636 16.690 hybrid contribution -1.196 1.219 -0.148 1.714 sum -5.248 14.230 9.487 17.890 Atomic orbital electron populations 1.20812 0.86409 1.04283 1.04177 1.22091 0.98885 0.88429 0.93836 1.22328 0.94293 1.00200 1.01536 1.21799 0.95191 0.97359 0.94298 1.20728 0.95361 0.95275 1.03711 1.21130 0.89851 0.91279 0.91099 0.89256 1.22284 1.02125 1.03052 0.94667 1.86034 1.29718 1.46413 1.61935 1.19366 0.85490 0.99983 0.98074 1.21161 0.95562 0.98553 1.03545 1.20778 0.96258 1.02055 1.02000 1.20727 0.99419 0.94697 0.98065 1.20858 0.95770 1.02978 1.05754 1.17460 0.93362 0.93499 0.91111 1.20292 0.94044 0.99937 1.42053 0.94723 1.28393 1.10522 0.92336 0.89513 1.70628 1.09641 1.39981 1.27593 0.83164 0.69284 0.75496 0.78955 1.17828 1.18682 1.21078 1.22393 0.89359 0.98539 0.94696 1.67554 1.09759 1.31481 1.14128 0.88899 0.87876 0.91666 0.80470 0.81337 0.91380 0.88534 0.93050 0.84412 0.84357 0.85007 0.87480 0.91838 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 10.17 71.24 0.72 -1.00 16 2 C 0.11 2.71 6.78 42.55 0.29 3.00 16 3 C -0.16 -3.36 9.74 22.36 0.22 -3.14 16 4 C -0.06 -1.40 9.82 22.47 0.22 -1.18 16 5 C -0.15 -4.65 4.98 -19.77 -0.10 -4.75 16 6 C 0.12 4.03 2.45 29.85 0.07 4.11 16 7 H 0.09 2.58 6.26 -2.39 -0.01 2.56 16 8 C -0.16 -4.54 9.13 71.98 0.66 -3.88 16 9 O -0.33 -14.85 8.48 -89.62 -0.76 -15.61 16 10 C 0.02 0.73 6.63 23.08 0.15 0.88 16 11 C -0.17 -6.48 8.21 22.33 0.18 -6.30 16 12 C -0.19 -6.91 10.04 22.42 0.23 -6.69 16 13 C -0.11 -4.38 9.97 22.00 0.22 -4.16 16 14 C -0.23 -11.17 7.21 22.47 0.16 -11.01 16 15 C 0.05 2.58 5.16 -21.20 -0.11 2.47 16 16 C -0.53 -31.85 9.08 23.40 0.21 -31.64 16 17 H 0.03 2.28 7.87 -2.91 -0.02 2.26 16 18 C 0.00 0.19 5.42 85.25 0.46 0.65 16 19 N -0.85 -50.71 13.66 21.83 0.30 -50.41 16 20 Si 1.11 51.26 24.88 68.60 1.71 52.97 16 21 H -0.25 -10.54 6.43 99.48 0.64 -9.90 16 22 H -0.26 -11.87 7.01 99.48 0.70 -11.17 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 C 0.11 3.90 10.53 84.67 0.89 4.79 16 25 N -0.52 -17.88 10.27 -183.88 -1.89 -19.76 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.15 8.08 -2.38 -0.02 1.13 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 30 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.07 1.91 6.83 -2.39 -0.02 1.89 16 32 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.14 4.21 5.41 -2.91 -0.02 4.19 16 35 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.11 5.08 4.32 -2.91 -0.01 5.07 16 38 H 0.27 16.28 8.73 -92.70 -0.81 15.47 16 39 H 0.13 5.37 7.79 -2.91 -0.02 5.35 16 Total: -1.00 -71.80 323.25 4.78 -67.02 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.94 Total: 23.64 kcal Atomic # 6 Polarization: -62.33 SS G_CDS: 4.48 Total: -57.85 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.59 Total: -70.17 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.76 Total: -15.61 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 1.71 Total: 52.97 kcal Total: -71.80 4.78 -67.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.979 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds