Wall clock time and date at job start Tue Mar 31 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38224 * 119.61634 * 2 1 4 4 C 1.38635 * 119.16069 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.41726 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.41330 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47420 * 24.99809 * 6 5 4 8 8 C 1.53001 * 109.46824 * 264.99587 * 6 5 4 9 9 O 1.42905 * 109.47153 * 144.99956 * 6 5 4 10 10 C 1.35634 * 117.00007 * 204.93296 * 9 6 5 11 11 C 1.38439 * 120.26741 * 355.18835 * 10 9 6 12 12 C 1.38311 * 120.05096 * 180.27718 * 11 10 9 13 13 C 1.38813 * 120.59162 * 0.02562 * 12 11 10 14 14 C 1.36489 * 120.54059 * 0.02562 * 13 12 11 15 15 C 1.40729 * 119.92761 * 359.97438 * 14 13 12 16 16 C 1.41148 * 120.28823 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00425 * 145.98883 * 16 15 14 18 18 C 1.39940 * 120.00102 * 325.98523 * 16 15 14 19 19 N 1.30865 * 119.99798 * 359.22282 * 18 16 15 20 20 Si 1.86796 * 120.00137 * 179.21998 * 18 16 15 21 21 H 1.48503 * 109.46917 * 60.00026 * 20 18 16 22 22 H 1.48495 * 109.47376 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47031 * 300.00352 * 20 18 16 24 24 C 1.38179 * 119.16543 * 0.27365 * 5 4 3 25 25 N 1.31856 * 119.61975 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46995 * 90.00093 * 1 2 3 27 27 H 1.08995 * 109.46877 * 209.99801 * 1 2 3 28 28 H 1.08999 * 109.46845 * 330.00295 * 1 2 3 29 29 H 1.07998 * 120.42385 * 0.04207 * 3 2 1 30 30 H 1.07998 * 120.79165 * 180.02562 * 4 3 2 31 31 H 1.09006 * 109.46835 * 180.02562 * 8 6 5 32 32 H 1.08998 * 109.47303 * 300.00293 * 8 6 5 33 33 H 1.08999 * 109.46876 * 60.00516 * 8 6 5 34 34 H 1.08002 * 119.97498 * 0.27802 * 11 10 9 35 35 H 1.08001 * 119.70135 * 180.02562 * 12 11 10 36 36 H 1.08002 * 119.72959 * 180.02562 * 13 12 11 37 37 H 1.07996 * 120.03550 * 179.97438 * 14 13 12 38 38 H 0.97005 * 119.99738 * 179.97438 * 19 18 16 39 39 H 1.07997 * 119.61719 * 179.70753 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5765 1.1906 -0.0005 5 6 4.2267 -0.0342 -0.0016 6 6 5.7323 -0.0987 -0.0017 7 1 6.1352 0.8159 0.4334 8 6 6.2364 -0.2450 -1.4388 9 8 6.1610 -1.2224 0.7702 10 6 7.4033 -1.1601 1.3110 11 6 8.2353 -0.0908 1.0265 12 6 9.5034 -0.0347 1.5759 13 6 9.9553 -1.0444 2.4144 14 6 9.1556 -2.1101 2.7103 15 6 7.8613 -2.1899 2.1635 16 6 7.0277 -3.2883 2.4649 17 1 5.9600 -3.1491 2.5480 18 6 7.5847 -4.5578 2.6559 19 7 8.8768 -4.7295 2.5401 20 14 6.4838 -6.0072 3.0761 21 1 5.4946 -6.2095 1.9871 22 1 7.3119 -7.2305 3.2269 23 1 5.7695 -5.7335 4.3490 24 6 3.4767 -1.1948 -0.0079 25 7 2.1587 -1.1463 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6508 2.1373 0.0007 30 1 4.1367 2.1139 -0.0001 31 1 7.3254 -0.2920 -1.4388 32 1 5.8335 -1.1595 -1.8739 33 1 5.9094 0.6122 -2.0275 34 1 7.8940 0.7001 0.3750 35 1 10.1477 0.8023 1.3505 36 1 10.9479 -0.9862 2.8361 37 1 9.5157 -2.8913 3.3633 38 1 9.2630 -5.6094 2.6728 39 1 3.9755 -2.1526 -0.0135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:27 Heat of formation + Delta-G solvation = 9.974167 kcal Electronic energy + Delta-G solvation = -21482.216397 eV Core-core repulsion = 18354.571957 eV Total energy + Delta-G solvation = -3127.644440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.31619 -38.81299 -36.43302 -33.64395 -33.51156 -32.20274 -30.71146 -29.43559 -28.60931 -27.15859 -25.11366 -23.79233 -23.03690 -21.62942 -20.68760 -19.98096 -17.59909 -16.85493 -16.41478 -15.77615 -15.44613 -14.94111 -14.66905 -14.19748 -14.13941 -14.06552 -13.49876 -13.08163 -12.91943 -12.54411 -12.52867 -12.35290 -12.24106 -12.09592 -11.62368 -11.47802 -11.15216 -11.07083 -11.01635 -10.70414 -10.43942 -10.04442 -9.73981 -9.67170 -9.48432 -9.22993 -9.12818 -8.66570 -7.39568 -6.95248 -6.56088 -4.25463 1.18464 1.37021 2.79586 2.97029 3.14259 3.18391 3.25392 3.82929 4.04735 4.11211 4.39167 4.74235 4.75746 4.95811 5.07316 5.13677 5.38603 5.42247 5.49510 5.50578 5.55690 5.64563 5.80825 5.85281 6.00110 6.04799 6.06520 6.18706 6.29176 6.34950 6.43707 6.52277 6.83785 6.93007 7.15377 7.31483 7.41743 7.71443 7.82178 8.06165 8.13148 8.23846 8.42716 8.75435 8.92842 9.08485 10.36149 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.005507 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.974523 B = 5083.403993 C = 6631.083320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.117 3.883 3 C -0.177 4.177 4 C -0.067 4.067 5 C -0.132 4.132 6 C 0.128 3.872 7 H 0.074 0.926 8 C -0.170 4.170 9 O -0.296 6.296 10 C 0.022 3.978 11 C -0.186 4.186 12 C -0.203 4.203 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.095 3.905 16 C -0.448 4.448 17 H 0.077 0.923 18 C 0.070 3.930 19 N -0.815 5.815 20 Si 0.912 3.088 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.266 1.266 24 C 0.134 3.866 25 N -0.487 5.487 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.277 0.723 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 9.046 -5.172 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.020 4.020 3 C -0.197 4.197 4 C -0.093 4.093 5 C -0.134 4.134 6 C 0.070 3.930 7 H 0.091 0.909 8 C -0.227 4.227 9 O -0.211 6.211 10 C -0.022 4.022 11 C -0.205 4.205 12 C -0.223 4.223 13 C -0.152 4.152 14 C -0.150 4.150 15 C 0.092 3.908 16 C -0.478 4.478 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.443 5.443 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.022 4.022 25 N -0.196 5.196 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.947 7.907 -5.135 13.705 hybrid contribution 0.368 0.390 0.009 0.537 sum -9.579 8.298 -5.126 13.670 Atomic orbital electron populations 1.20680 0.89152 1.03278 1.02776 1.21320 0.96955 0.88633 0.95131 1.21824 0.94536 0.99120 1.04231 1.21367 0.94363 0.97523 0.96004 1.20771 0.96103 0.94485 1.01997 1.20764 0.88893 0.91147 0.92203 0.90854 1.22307 1.02625 1.02251 0.95517 1.86014 1.31283 1.38760 1.65007 1.19293 0.84497 0.98919 0.99526 1.20639 0.96127 0.98508 1.05183 1.20194 0.96189 1.00333 1.05576 1.20445 0.98538 0.95790 1.00454 1.21054 0.94696 0.97551 1.01725 1.17080 0.93118 0.90785 0.89806 1.19302 0.95072 0.91758 1.41717 0.90448 1.25821 0.95286 1.00386 0.92934 1.69762 1.11549 1.24688 1.38313 0.86298 0.80404 0.79608 0.79963 1.19010 1.20523 1.19109 1.22768 0.88424 0.99027 0.92018 1.67616 1.10061 1.29128 1.12795 0.90668 0.90538 0.90971 0.85027 0.84936 0.91044 0.91635 0.92165 0.88524 0.89336 0.89288 0.85293 0.91170 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.17 36.01 0.37 -0.61 16 2 C 0.12 1.57 6.78 -82.58 -0.56 1.01 16 3 C -0.18 -2.11 9.74 -39.44 -0.38 -2.49 16 4 C -0.07 -0.87 9.84 -39.27 -0.39 -1.25 16 5 C -0.13 -2.08 5.02 -104.48 -0.52 -2.60 16 6 C 0.13 2.19 2.45 -27.88 -0.07 2.12 16 7 H 0.07 1.21 6.20 -51.93 -0.32 0.88 16 8 C -0.17 -2.57 9.16 37.16 0.34 -2.23 16 9 O -0.30 -6.54 8.39 -18.60 -0.16 -6.69 16 10 C 0.02 0.53 6.63 -38.34 -0.25 0.27 16 11 C -0.19 -4.07 8.25 -39.48 -0.33 -4.39 16 12 C -0.20 -4.48 10.04 -39.34 -0.39 -4.87 16 13 C -0.13 -3.12 9.97 -40.00 -0.40 -3.52 16 14 C -0.13 -3.39 8.59 -39.27 -0.34 -3.73 16 15 C 0.09 2.54 5.54 -106.68 -0.59 1.95 16 16 C -0.45 -12.14 8.63 -37.84 -0.33 -12.47 16 17 H 0.08 2.09 7.77 -52.49 -0.41 1.68 16 18 C 0.07 1.81 5.38 -17.33 -0.09 1.71 16 19 N -0.82 -21.45 10.74 55.55 0.60 -20.85 16 20 Si 0.91 19.63 29.56 -169.99 -5.02 14.60 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C 0.13 2.29 10.52 -17.55 -0.18 2.11 16 25 N -0.49 -7.96 10.27 -9.47 -0.10 -8.06 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.07 1.15 6.97 -51.93 -0.36 0.79 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.82 5.47 -52.49 -0.29 1.53 16 35 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.13 3.46 6.26 -52.49 -0.33 3.13 16 38 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 39 H 0.17 2.96 7.64 -52.49 -0.40 2.56 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -29.26 328.48 -8.90 -38.16 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.04 Total: 6.88 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -4.12 Total: -28.99 kcal Atomic # 7 Polarization: -29.41 SS G_CDS: 0.50 Total: -28.91 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.16 Total: -6.69 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.26 -8.90 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.137 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds