Wall clock time and date at job start Tue Mar 31 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38224 * 119.61634 * 2 1 4 4 C 1.38635 * 119.16069 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.41726 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.41330 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47420 * 24.99809 * 6 5 4 8 8 C 1.53001 * 109.46824 * 264.99587 * 6 5 4 9 9 O 1.42905 * 109.47153 * 144.99956 * 6 5 4 10 10 C 1.35634 * 117.00007 * 204.93296 * 9 6 5 11 11 C 1.38439 * 120.26741 * 355.18835 * 10 9 6 12 12 C 1.38311 * 120.05096 * 180.27718 * 11 10 9 13 13 C 1.38813 * 120.59162 * 0.02562 * 12 11 10 14 14 C 1.36489 * 120.54059 * 0.02562 * 13 12 11 15 15 C 1.40729 * 119.92761 * 359.97438 * 14 13 12 16 16 C 1.41148 * 120.28823 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00425 * 145.98883 * 16 15 14 18 18 C 1.39940 * 120.00102 * 325.98523 * 16 15 14 19 19 N 1.30865 * 119.99798 * 359.22282 * 18 16 15 20 20 Si 1.86796 * 120.00137 * 179.21998 * 18 16 15 21 21 H 1.48503 * 109.46917 * 60.00026 * 20 18 16 22 22 H 1.48495 * 109.47376 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47031 * 300.00352 * 20 18 16 24 24 C 1.38179 * 119.16543 * 0.27365 * 5 4 3 25 25 N 1.31856 * 119.61975 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46995 * 90.00093 * 1 2 3 27 27 H 1.08995 * 109.46877 * 209.99801 * 1 2 3 28 28 H 1.08999 * 109.46845 * 330.00295 * 1 2 3 29 29 H 1.07998 * 120.42385 * 0.04207 * 3 2 1 30 30 H 1.07998 * 120.79165 * 180.02562 * 4 3 2 31 31 H 1.09006 * 109.46835 * 180.02562 * 8 6 5 32 32 H 1.08998 * 109.47303 * 300.00293 * 8 6 5 33 33 H 1.08999 * 109.46876 * 60.00516 * 8 6 5 34 34 H 1.08002 * 119.97498 * 0.27802 * 11 10 9 35 35 H 1.08001 * 119.70135 * 180.02562 * 12 11 10 36 36 H 1.08002 * 119.72959 * 180.02562 * 13 12 11 37 37 H 1.07996 * 120.03550 * 179.97438 * 14 13 12 38 38 H 0.97005 * 119.99738 * 179.97438 * 19 18 16 39 39 H 1.07997 * 119.61719 * 179.70753 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5765 1.1906 -0.0005 5 6 4.2267 -0.0342 -0.0016 6 6 5.7323 -0.0987 -0.0017 7 1 6.1352 0.8159 0.4334 8 6 6.2364 -0.2450 -1.4388 9 8 6.1610 -1.2224 0.7702 10 6 7.4033 -1.1601 1.3110 11 6 8.2353 -0.0908 1.0265 12 6 9.5034 -0.0347 1.5759 13 6 9.9553 -1.0444 2.4144 14 6 9.1556 -2.1101 2.7103 15 6 7.8613 -2.1899 2.1635 16 6 7.0277 -3.2883 2.4649 17 1 5.9600 -3.1491 2.5480 18 6 7.5847 -4.5578 2.6559 19 7 8.8768 -4.7295 2.5401 20 14 6.4838 -6.0072 3.0761 21 1 5.4946 -6.2095 1.9871 22 1 7.3119 -7.2305 3.2269 23 1 5.7695 -5.7335 4.3490 24 6 3.4767 -1.1948 -0.0079 25 7 2.1587 -1.1463 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6508 2.1373 0.0007 30 1 4.1367 2.1139 -0.0001 31 1 7.3254 -0.2920 -1.4388 32 1 5.8335 -1.1595 -1.8739 33 1 5.9094 0.6122 -2.0275 34 1 7.8940 0.7001 0.3750 35 1 10.1477 0.8023 1.3505 36 1 10.9479 -0.9862 2.8361 37 1 9.5157 -2.8913 3.3633 38 1 9.2630 -5.6094 2.6728 39 1 3.9755 -2.1526 -0.0135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:26 Heat of formation + Delta-G solvation = -5.254135 kcal Electronic energy + Delta-G solvation = -21482.876746 eV Core-core repulsion = 18354.571957 eV Total energy + Delta-G solvation = -3128.304788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49648 -40.41783 -38.13158 -35.41992 -34.88744 -33.25071 -32.03504 -31.15241 -30.39260 -28.18839 -27.03149 -24.98709 -24.26001 -23.10340 -22.39063 -21.47575 -19.40024 -18.47395 -17.66456 -17.28144 -16.71109 -16.46903 -16.05997 -15.89922 -15.51956 -15.30988 -14.90434 -14.57459 -14.28635 -14.03787 -13.85111 -13.65864 -13.27447 -13.18214 -13.02576 -12.97572 -12.88096 -12.75523 -12.55513 -12.22629 -12.09432 -11.66352 -11.59959 -11.23996 -11.04980 -10.75532 -10.37997 -9.76328 -9.27868 -8.80042 -8.46475 -6.25782 0.09226 0.31116 0.95916 1.11034 1.35571 1.45938 1.49683 2.23895 2.56886 2.81122 2.82588 3.34386 3.67212 3.75812 3.84100 3.94145 4.06788 4.21075 4.28244 4.38594 4.49855 4.52367 4.62552 4.73809 4.75589 4.81091 4.83479 4.86078 5.09740 5.12318 5.18258 5.21197 5.23294 5.32807 5.46441 5.52514 5.78263 5.88177 5.95259 6.16933 6.33274 6.53658 6.85078 6.97287 7.03125 7.25303 8.46112 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.005507 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.974523 B = 5083.403993 C = 6631.083320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.105 3.895 3 C -0.165 4.165 4 C -0.062 4.062 5 C -0.147 4.147 6 C 0.123 3.877 7 H 0.087 0.913 8 C -0.163 4.163 9 O -0.320 6.320 10 C 0.019 3.981 11 C -0.186 4.186 12 C -0.190 4.190 13 C -0.145 4.145 14 C -0.150 4.150 15 C 0.051 3.949 16 C -0.482 4.482 17 H 0.060 0.940 18 C 0.031 3.969 19 N -0.845 5.845 20 Si 0.976 3.024 21 H -0.269 1.269 22 H -0.264 1.264 23 H -0.263 1.263 24 C 0.107 3.893 25 N -0.517 5.517 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.176 0.824 30 H 0.167 0.833 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.283 0.717 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 12.149 -6.103 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.033 4.033 3 C -0.184 4.184 4 C -0.088 4.088 5 C -0.149 4.149 6 C 0.066 3.934 7 H 0.104 0.896 8 C -0.220 4.220 9 O -0.235 6.235 10 C -0.026 4.026 11 C -0.205 4.205 12 C -0.209 4.209 13 C -0.163 4.163 14 C -0.170 4.170 15 C 0.049 3.951 16 C -0.514 4.514 17 H 0.079 0.921 18 C -0.180 4.180 19 N -0.474 5.474 20 Si 0.797 3.203 21 H -0.194 1.194 22 H -0.189 1.189 23 H -0.187 1.187 24 C -0.049 4.049 25 N -0.227 5.227 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.193 0.807 30 H 0.184 0.816 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.004 11.022 -6.072 16.716 hybrid contribution 0.626 -0.360 0.216 0.753 sum -10.379 10.662 -5.856 15.990 Atomic orbital electron populations 1.20800 0.86484 1.04291 1.04073 1.22063 0.98819 0.88443 0.93948 1.22301 0.94228 1.00190 1.01662 1.21764 0.95179 0.97343 0.94476 1.20714 0.95170 0.95356 1.03634 1.21077 0.89988 0.89841 0.92463 0.89577 1.22260 1.01755 1.03240 0.94751 1.85998 1.30420 1.41563 1.65524 1.19443 0.85622 0.98720 0.98771 1.21017 0.95777 0.98522 1.05154 1.20692 0.96437 1.00432 1.03368 1.20733 0.99335 0.95356 1.00872 1.21002 0.95253 0.98359 1.02417 1.17440 0.93990 0.92135 0.91537 1.19366 0.94410 0.93276 1.44331 0.92148 1.26539 0.96615 1.02364 0.92519 1.69826 1.12728 1.25460 1.39383 0.85350 0.78611 0.76835 0.79460 1.19354 1.18858 1.18738 1.22445 0.89260 0.98666 0.94530 1.67567 1.09734 1.31333 1.14074 0.89090 0.91531 0.87968 0.80652 0.81574 0.92023 0.92952 0.88621 0.84931 0.85427 0.86905 0.87295 0.90693 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.17 71.24 0.72 -0.91 16 2 C 0.11 2.61 6.78 42.55 0.29 2.90 16 3 C -0.16 -3.28 9.74 22.36 0.22 -3.06 16 4 C -0.06 -1.41 9.84 22.47 0.22 -1.19 16 5 C -0.15 -4.54 5.02 -19.77 -0.10 -4.64 16 6 C 0.12 4.12 2.45 29.85 0.07 4.20 16 7 H 0.09 2.61 6.20 -2.39 -0.01 2.60 16 8 C -0.16 -4.73 9.16 71.98 0.66 -4.07 16 9 O -0.32 -14.63 8.39 -89.47 -0.75 -15.38 16 10 C 0.02 0.94 6.63 23.08 0.15 1.09 16 11 C -0.19 -7.82 8.25 22.34 0.18 -7.64 16 12 C -0.19 -7.89 10.04 22.42 0.23 -7.66 16 13 C -0.14 -6.66 9.97 22.00 0.22 -6.44 16 14 C -0.15 -8.10 8.59 22.47 0.19 -7.90 16 15 C 0.05 2.87 5.54 -21.20 -0.12 2.75 16 16 C -0.48 -27.89 8.63 23.40 0.20 -27.68 16 17 H 0.06 3.54 7.77 -2.91 -0.02 3.51 16 18 C 0.03 1.65 5.38 85.25 0.46 2.11 16 19 N -0.85 -46.56 10.74 21.83 0.23 -46.32 16 20 Si 0.98 42.13 29.56 68.60 2.03 44.16 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 C 0.11 3.82 10.52 84.67 0.89 4.71 16 25 N -0.52 -17.18 10.27 -183.89 -1.89 -19.07 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.10 1.07 8.08 -2.39 -0.02 1.05 16 29 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.06 1.89 6.97 -2.38 -0.02 1.88 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.13 4.54 5.47 -2.91 -0.02 4.52 16 35 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.11 6.18 6.26 -2.91 -0.02 6.16 16 38 H 0.28 14.24 8.30 -92.70 -0.77 13.48 16 39 H 0.13 5.39 7.64 -2.91 -0.02 5.37 16 Total: -1.00 -68.42 328.48 5.17 -63.26 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 1.05 Total: 26.80 kcal Atomic # 6 Polarization: -57.94 SS G_CDS: 4.49 Total: -53.44 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -1.65 Total: -65.39 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.75 Total: -15.38 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.42 5.17 -63.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.001 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds