Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47309 * 2 1 4 4 C 1.38828 * 120.35593 * 270.02525 * 3 2 1 5 5 C 1.38376 * 118.48131 * 179.70420 * 4 3 2 6 6 C 1.38921 * 119.11555 * 0.51059 * 5 4 3 7 7 O 1.35677 * 119.68458 * 179.75089 * 6 5 4 8 8 C 1.42899 * 116.99802 * 179.73085 * 7 6 5 9 9 H 1.09003 * 109.47492 * 29.99882 * 8 7 6 10 10 C 1.50704 * 109.47012 * 270.00303 * 8 7 6 11 11 H 1.08003 * 119.99623 * 324.82146 * 10 8 7 12 12 C 1.37878 * 120.00145 * 144.82575 * 10 8 7 13 13 N 1.31508 * 120.00284 * 173.01268 * 12 10 8 14 14 Si 1.86806 * 119.99841 * 353.01137 * 12 10 8 15 15 H 1.48498 * 109.46954 * 85.14600 * 14 12 10 16 16 H 1.48493 * 109.46740 * 205.14798 * 14 12 10 17 17 H 1.48499 * 109.47045 * 325.15061 * 14 12 10 18 18 C 1.50695 * 109.47132 * 150.00181 * 8 7 6 19 19 C 1.38235 * 120.00314 * 36.33724 * 18 8 7 20 20 C 1.38234 * 120.00004 * 179.79050 * 19 18 8 21 21 C 1.38235 * 120.00151 * 0.43911 * 20 19 18 22 22 C 1.38239 * 119.99856 * 359.81363 * 21 20 19 23 23 C 1.38232 * 119.99870 * 359.97438 * 22 21 20 24 24 N 1.32242 * 120.62784 * 359.48234 * 6 5 4 25 25 C 1.31968 * 121.65001 * 0.26684 * 24 6 5 26 26 H 1.08993 * 109.47531 * 59.99406 * 1 2 3 27 27 H 1.08995 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46598 * 299.99638 * 1 2 3 29 29 H 1.09001 * 109.47337 * 240.00275 * 2 1 3 30 30 H 1.09001 * 109.47476 * 119.99973 * 2 1 3 31 31 H 1.07997 * 120.75559 * 359.97438 * 4 3 2 32 32 H 1.08007 * 120.44499 * 180.26330 * 5 4 3 33 33 H 0.96998 * 120.00810 * 180.02562 * 13 12 10 34 34 H 1.08004 * 119.99624 * 359.97438 * 19 18 8 35 35 H 1.08001 * 119.99507 * 180.27247 * 20 19 18 36 36 H 1.08000 * 119.99709 * 179.83618 * 21 20 19 37 37 H 1.08001 * 119.99598 * 180.02562 * 22 21 20 38 38 H 1.08005 * 119.99524 * 180.02562 * 23 22 21 39 39 H 1.07997 * 119.58602 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2657 2.0825 -1.1979 5 6 2.7209 3.3885 -1.1527 6 6 2.9379 3.9862 0.0824 7 8 3.3889 5.2645 0.1402 8 6 3.5866 5.8245 1.4400 9 1 3.8520 5.0326 2.1404 10 6 2.3161 6.4941 1.8970 11 1 1.6840 6.9985 1.1812 12 6 1.9609 6.4627 3.2288 13 7 0.9290 7.1603 3.6508 14 14 2.9454 5.4293 4.4340 15 1 4.1147 6.2086 4.9142 16 1 2.0866 5.0631 5.5887 17 1 3.4176 4.1949 3.7570 18 6 4.6983 6.8404 1.3855 19 6 4.8462 7.6440 0.2705 20 6 5.8634 8.5789 0.2224 21 6 6.7381 8.7040 1.2854 22 6 6.5933 7.8967 2.3983 23 6 5.5735 6.9649 2.4482 24 7 2.7040 3.3230 1.2023 25 6 2.2649 2.0785 1.1913 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0918 1.5906 -2.1435 32 1 2.9088 3.9345 -2.0654 33 1 0.6793 7.1386 4.5878 34 1 4.1653 7.5435 -0.5618 35 1 5.9762 9.2097 -0.6470 36 1 7.5344 9.4326 1.2466 37 1 7.2765 7.9948 3.2290 38 1 5.4602 6.3346 3.3179 39 1 2.0846 1.5684 2.1259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230846056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = 17.232515 kcal Electronic energy + Delta-G solvation = -21611.695764 eV Core-core repulsion = 18484.366070 eV Total energy + Delta-G solvation = -3127.329694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07547 -38.68025 -37.13835 -34.05913 -32.94882 -31.72960 -31.11574 -30.24995 -28.65183 -27.21640 -23.97195 -23.58368 -22.61941 -21.95758 -20.99383 -20.17202 -17.59715 -17.17687 -16.77301 -15.87298 -15.21597 -14.94870 -14.44118 -14.36369 -14.09621 -13.79994 -13.66751 -13.22465 -13.09685 -12.86843 -12.66848 -12.57274 -12.34837 -12.11731 -11.72923 -11.51989 -11.13637 -11.02760 -10.91643 -10.86184 -10.37997 -9.98038 -9.68800 -9.46372 -9.41915 -8.84709 -8.68484 -8.27584 -7.98422 -7.63987 -6.22911 -4.25825 1.64526 1.77310 2.03497 2.07165 3.22813 3.32168 3.43139 3.93708 4.29950 4.34097 4.49119 4.85834 4.97017 5.04024 5.12650 5.29183 5.42490 5.48731 5.49337 5.53606 5.59764 5.65232 5.76801 5.88347 5.96248 5.98736 6.15618 6.21607 6.23124 6.27175 6.35218 6.55867 6.63563 6.70628 6.72641 6.94154 7.08535 7.15075 7.37976 7.40726 7.67541 8.07145 8.37370 8.54989 8.84564 9.37979 10.88360 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.005779 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.584193 B = 4844.329659 C = 5800.645795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 C -0.200 4.200 4 C -0.043 4.043 5 C -0.206 4.206 6 C 0.351 3.649 7 O -0.306 6.306 8 C 0.209 3.791 9 H 0.070 0.930 10 C -0.518 4.518 11 H 0.080 0.920 12 C 0.090 3.910 13 N -0.882 5.882 14 Si 0.855 3.145 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.237 1.237 18 C -0.040 4.040 19 C -0.103 4.103 20 C -0.124 4.124 21 C -0.145 4.145 22 C -0.121 4.121 23 C -0.128 4.128 24 N -0.520 5.520 25 C 0.144 3.856 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.268 0.732 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 -9.635 -6.724 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.068 4.068 5 C -0.227 4.227 6 C 0.172 3.828 7 O -0.212 6.212 8 C 0.155 3.845 9 H 0.087 0.913 10 C -0.555 4.555 11 H 0.098 0.902 12 C -0.115 4.115 13 N -0.518 5.518 14 Si 0.682 3.318 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.160 1.160 18 C -0.040 4.040 19 C -0.121 4.121 20 C -0.142 4.142 21 C -0.163 4.163 22 C -0.139 4.139 23 C -0.146 4.146 24 N -0.242 5.242 25 C -0.013 4.013 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.793 -8.915 -5.971 12.193 hybrid contribution 0.039 -0.613 0.292 0.680 sum 5.832 -9.528 -5.679 12.532 Atomic orbital electron populations 1.21780 0.95199 1.01164 1.02400 1.20278 0.95746 0.92233 1.02274 1.20558 1.07358 0.98193 0.94187 1.21087 0.94838 0.93133 0.97758 1.21026 1.08435 0.96253 0.97000 1.19856 0.88514 0.85379 0.89086 1.86163 1.77633 1.21769 1.35678 1.19512 0.93571 0.91223 0.80204 0.91262 1.21033 1.04460 1.35320 0.94684 0.90160 1.24893 0.94504 0.94189 0.97925 1.69884 1.26672 1.39044 1.16238 0.87166 0.80513 0.83202 0.80953 1.19740 1.21296 1.16044 1.20279 0.92746 0.97577 0.93436 1.20926 0.97590 0.95297 0.98310 1.21049 0.96088 0.98706 0.98401 1.20902 1.00217 1.00496 0.94696 1.20928 0.98380 0.96634 0.97960 1.20931 0.95195 0.99935 0.98514 1.67513 1.17020 1.09372 1.30342 1.22270 0.92712 0.89139 0.97175 0.92704 0.92813 0.92447 0.91547 0.91344 0.85224 0.84815 0.92220 0.86102 0.86893 0.87060 0.86884 0.86967 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.07 -0.71 6.09 -27.88 -0.17 -0.88 16 3 C -0.20 -2.86 5.15 -104.47 -0.54 -3.40 16 4 C -0.04 -0.60 9.85 -39.31 -0.39 -0.99 16 5 C -0.21 -3.49 10.04 -39.28 -0.39 -3.89 16 6 C 0.35 7.42 7.45 -17.12 -0.13 7.29 16 7 O -0.31 -7.11 8.94 -18.73 -0.17 -7.28 16 8 C 0.21 5.17 1.83 -29.04 -0.05 5.11 16 9 H 0.07 1.74 3.71 -51.93 -0.19 1.55 16 10 C -0.52 -14.76 9.17 -34.44 -0.32 -15.07 16 11 H 0.08 2.53 8.06 -52.48 -0.42 2.10 16 12 C 0.09 2.59 5.47 -17.82 -0.10 2.49 16 13 N -0.88 -26.82 13.96 55.43 0.77 -26.05 16 14 Si 0.86 21.16 25.61 -169.99 -4.35 16.81 16 15 H -0.27 -6.45 6.43 56.52 0.36 -6.09 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.24 -5.64 6.36 56.52 0.36 -5.28 16 18 C -0.04 -0.90 4.98 -104.63 -0.52 -1.42 16 19 C -0.10 -2.12 9.35 -39.58 -0.37 -2.49 16 20 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 21 C -0.14 -2.42 10.05 -39.58 -0.40 -2.82 16 22 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 23 C -0.13 -2.70 9.35 -39.58 -0.37 -3.07 16 24 N -0.52 -11.14 8.65 -13.33 -0.12 -11.26 16 25 C 0.14 2.49 10.85 -17.56 -0.19 2.30 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 33 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.12 2.44 7.67 -52.48 -0.40 2.04 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.11 2.38 5.78 -52.48 -0.30 2.07 16 39 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -31.83 329.14 -8.45 -40.28 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.18 Total: 5.68 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -4.36 Total: -23.13 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.66 Total: -37.31 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.17 Total: -7.28 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.35 Total: 16.81 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.83 -8.45 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230846056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.510 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds