Wall clock time and date at job start Tue Mar 31 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38421 * 120.44276 * 265.00161 * 3 2 1 5 5 C 1.38787 * 118.48611 * 179.97438 * 4 3 2 6 6 C 1.38091 * 119.28699 * 0.02562 * 5 4 3 7 7 N 1.31933 * 120.82991 * 359.97438 * 6 5 4 8 8 C 1.32275 * 121.65217 * 359.73632 * 7 6 5 9 9 O 1.35677 * 119.68775 * 180.28547 * 8 7 6 10 10 C 1.42906 * 116.99932 * 0.24281 * 9 8 7 11 11 H 1.09001 * 109.46990 * 330.00069 * 10 9 8 12 12 C 1.50696 * 109.47212 * 89.99872 * 10 9 8 13 13 H 1.07996 * 120.00267 * 240.00120 * 12 10 9 14 14 C 1.37883 * 119.99951 * 60.00000 * 12 10 9 15 15 N 1.31513 * 119.99796 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00177 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47274 * 90.00101 * 16 14 12 18 18 H 1.48497 * 109.47511 * 210.00274 * 16 14 12 19 19 H 1.48506 * 109.46949 * 330.00395 * 16 14 12 20 20 C 1.50703 * 109.47014 * 210.00101 * 10 9 8 21 21 C 1.38229 * 119.99926 * 324.72314 * 20 10 9 22 22 C 1.38234 * 119.99632 * 179.81041 * 21 20 10 23 23 C 1.38235 * 120.00156 * 0.39850 * 22 21 20 24 24 C 1.38230 * 119.99867 * 359.85859 * 23 22 21 25 25 C 1.38235 * 119.99458 * 144.99863 * 20 10 9 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08005 * 120.75769 * 359.95556 * 4 3 2 32 32 H 1.07998 * 120.35457 * 180.02562 * 5 4 3 33 33 H 1.07990 * 119.58105 * 180.02562 * 6 5 4 34 34 H 0.97002 * 120.00092 * 180.02562 * 15 14 12 35 35 H 1.08003 * 120.00347 * 0.02562 * 21 20 10 36 36 H 1.08006 * 119.99671 * 180.23202 * 22 21 20 37 37 H 1.08001 * 119.99844 * 179.83139 * 23 22 21 38 38 H 1.07999 * 119.99735 * 179.97438 * 24 23 22 39 39 H 1.07992 * 120.00403 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3641 2.0475 -1.1888 5 6 2.8220 3.3568 -1.1417 6 6 2.9325 3.9901 0.0804 7 7 2.6085 3.3665 1.1970 8 6 2.1631 2.1210 1.1922 9 8 1.8360 1.5198 2.3637 10 6 1.9929 2.2927 3.5555 11 1 2.8058 3.0063 3.4213 12 6 0.7143 3.0362 3.8440 13 1 0.7154 4.1153 3.8886 14 6 -0.4570 2.3389 4.0510 15 7 -0.4583 1.0249 3.9972 16 14 -2.0418 3.2605 4.4094 17 1 -2.7385 3.5623 3.1331 18 1 -2.9189 2.4226 5.2660 19 1 -1.7279 4.5295 5.1140 20 6 2.3131 1.3775 4.7091 21 6 1.7446 0.1190 4.7715 22 6 2.0414 -0.7219 5.8277 23 6 2.9003 -0.3013 6.8258 24 6 3.4647 0.9592 6.7662 25 6 3.1710 1.7987 5.7079 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.2691 1.5292 -2.1316 32 1 3.0890 3.8747 -2.0510 33 1 3.2879 5.0090 0.1226 34 1 -1.2824 0.5343 4.1425 35 1 1.0712 -0.2085 3.9932 36 1 1.6001 -1.7066 5.8744 37 1 3.1301 -0.9573 7.6524 38 1 4.1354 1.2879 7.5462 39 1 3.6119 2.7834 5.6613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234577336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:17 Heat of formation + Delta-G solvation = 22.994103 kcal Electronic energy + Delta-G solvation = -22393.524754 eV Core-core repulsion = 19266.444901 eV Total energy + Delta-G solvation = -3127.079853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.86824 -38.24850 -36.52750 -34.11936 -33.03719 -30.95349 -30.43051 -29.67704 -28.58673 -26.89294 -23.82832 -23.51331 -22.16354 -21.38528 -20.81662 -20.06088 -17.62034 -16.55696 -16.19963 -15.43938 -15.17232 -14.80581 -14.26417 -14.05373 -13.98043 -13.42255 -13.21766 -12.94984 -12.77591 -12.48900 -12.33972 -12.13197 -11.68718 -11.57275 -11.43898 -11.34332 -11.00758 -10.72546 -10.58030 -10.44468 -10.35680 -10.06799 -9.47460 -9.29323 -9.01712 -8.81044 -8.65117 -7.83224 -7.54219 -7.38238 -6.03542 -4.34561 1.79800 2.01218 2.43424 2.59297 3.21937 3.28755 3.32543 4.26635 4.28775 4.51922 4.95167 5.03971 5.17637 5.28763 5.49864 5.51786 5.77001 5.80009 5.85348 5.94322 5.97257 5.99120 6.08055 6.28452 6.37585 6.41721 6.52281 6.62643 6.67092 6.77661 6.84484 6.92253 6.98324 7.07424 7.12914 7.31591 7.48801 7.60317 7.81307 7.98205 8.03263 8.24924 8.47349 8.70112 8.89355 9.39629 10.80384 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.007278 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.641954 B = 3846.383761 C = 4469.051240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 C -0.174 4.174 4 C -0.049 4.049 5 C -0.243 4.243 6 C 0.133 3.867 7 N -0.534 5.534 8 C 0.361 3.639 9 O -0.277 6.277 10 C 0.242 3.758 11 H 0.052 0.948 12 C -0.523 4.523 13 H 0.066 0.934 14 C 0.080 3.920 15 N -0.850 5.850 16 Si 0.893 3.107 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.046 4.046 21 C -0.048 4.048 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.124 4.124 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.264 0.736 35 H 0.164 0.836 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 -1.593 -5.820 7.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.178 4.178 4 C -0.075 4.075 5 C -0.264 4.264 6 C -0.024 4.024 7 N -0.258 5.258 8 C 0.181 3.819 9 O -0.182 6.182 10 C 0.188 3.812 11 H 0.070 0.930 12 C -0.560 4.560 13 H 0.084 0.916 14 C -0.125 4.125 15 N -0.485 5.485 16 Si 0.721 3.279 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.047 4.047 21 C -0.066 4.066 22 C -0.171 4.171 23 C -0.162 4.162 24 C -0.167 4.167 25 C -0.143 4.143 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.162 0.838 34 H 0.074 0.926 35 H 0.181 0.819 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.430 -1.606 -4.882 6.785 hybrid contribution -1.094 0.433 -0.334 1.223 sum 3.336 -1.173 -5.216 6.302 Atomic orbital electron populations 1.21697 0.94916 1.00993 1.02457 1.20175 0.96192 0.91632 1.01866 1.19936 1.07755 0.98685 0.91393 1.21117 0.95197 0.94297 0.96842 1.21684 1.09150 0.96578 0.99006 1.22304 0.93997 0.98798 0.87347 1.67483 1.17015 1.09777 1.31568 1.19880 0.87037 0.87153 0.87858 1.86475 1.77243 1.41989 1.12451 1.18906 0.96838 0.87596 0.77832 0.93009 1.21335 0.92284 0.93317 1.49064 0.91602 1.25040 0.99191 0.94838 0.93463 1.69792 1.26700 1.05536 1.46492 0.86570 0.82992 0.80031 0.78348 1.20499 1.20942 1.19722 1.19921 0.93726 0.94461 0.96571 1.21882 0.93834 0.92400 0.98528 1.21142 0.99917 0.99569 0.96480 1.20835 1.00011 0.96413 0.98981 1.20706 1.02301 0.95026 0.98667 1.20778 0.99296 0.98924 0.95276 0.93970 0.93249 0.90727 0.90480 0.92489 0.85668 0.85996 0.83759 0.92590 0.81876 0.87968 0.88205 0.87887 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.89 37.16 0.37 -2.06 16 2 C -0.06 -1.02 5.80 -27.88 -0.16 -1.18 16 3 C -0.17 -3.24 5.17 -104.32 -0.54 -3.78 16 4 C -0.05 -0.77 9.83 -39.31 -0.39 -1.16 16 5 C -0.24 -3.64 10.11 -39.43 -0.40 -4.04 16 6 C 0.13 2.26 11.18 -17.56 -0.20 2.06 16 7 N -0.53 -11.36 8.64 -13.33 -0.12 -11.48 16 8 C 0.36 7.92 7.43 -17.13 -0.13 7.79 16 9 O -0.28 -6.69 7.47 -18.73 -0.14 -6.83 16 10 C 0.24 6.01 2.36 -29.04 -0.07 5.95 16 11 H 0.05 1.30 6.89 -51.93 -0.36 0.94 16 12 C -0.52 -13.95 8.89 -34.44 -0.31 -14.26 16 13 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 14 C 0.08 2.10 5.24 -17.82 -0.09 2.00 16 15 N -0.85 -21.86 8.50 55.43 0.47 -21.39 16 16 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.05 -1.10 4.80 -104.62 -0.50 -1.60 16 21 C -0.05 -1.11 7.46 -39.59 -0.30 -1.40 16 22 C -0.15 -3.15 10.05 -39.58 -0.40 -3.55 16 23 C -0.14 -2.76 10.05 -39.59 -0.40 -3.16 16 24 C -0.15 -2.89 10.05 -39.58 -0.40 -3.28 16 25 C -0.12 -2.69 9.68 -39.58 -0.38 -3.07 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.08 1.40 7.72 -51.93 -0.40 1.00 16 30 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 31 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 32 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 35 H 0.16 4.05 5.50 -52.48 -0.29 3.76 16 36 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -27.93 328.57 -9.38 -37.31 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.24 Total: 6.39 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -4.28 Total: -24.72 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.36 Total: -32.87 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.14 Total: -6.83 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.93 -9.38 -37.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234577336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.305 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds