Wall clock time and date at job start Tue Mar 31 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47228 * 2 1 4 4 C 1.38417 * 120.43900 * 264.97375 * 3 2 1 5 5 C 1.38786 * 118.48787 * 180.02562 * 4 3 2 6 6 C 1.38093 * 119.28586 * 359.97438 * 5 4 3 7 7 N 1.31946 * 120.83124 * 359.72712 * 6 5 4 8 8 C 1.32278 * 121.64468 * 0.56016 * 7 6 5 9 9 O 1.35669 * 119.68159 * 179.71150 * 8 7 6 10 10 C 1.42897 * 117.00414 * 359.73047 * 9 8 7 11 11 H 1.09002 * 109.46769 * 29.99769 * 10 9 8 12 12 C 1.50700 * 109.47518 * 270.00154 * 10 9 8 13 13 H 1.08005 * 119.99479 * 324.87513 * 12 10 9 14 14 C 1.37871 * 120.00506 * 144.87383 * 12 10 9 15 15 N 1.31510 * 120.00046 * 5.15967 * 14 12 10 16 16 Si 1.86801 * 120.00273 * 185.16139 * 14 12 10 17 17 H 1.48499 * 109.47336 * 89.99787 * 16 14 12 18 18 H 1.48502 * 109.47355 * 210.00026 * 16 14 12 19 19 H 1.48501 * 109.47030 * 330.00113 * 16 14 12 20 20 C 1.50698 * 109.47824 * 149.99902 * 10 9 8 21 21 C 1.38241 * 119.99747 * 37.68473 * 20 10 9 22 22 C 1.38231 * 120.00209 * 179.79421 * 21 20 10 23 23 C 1.38240 * 119.99639 * 0.43638 * 22 21 20 24 24 C 1.38235 * 120.00173 * 359.82196 * 23 22 21 25 25 C 1.38234 * 120.00068 * 359.96774 * 24 23 22 26 26 H 1.09000 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47387 * 300.00253 * 1 2 3 28 28 H 1.08998 * 109.46914 * 60.00195 * 1 2 3 29 29 H 1.08994 * 109.47350 * 239.99023 * 2 1 3 30 30 H 1.09004 * 109.46628 * 119.99487 * 2 1 3 31 31 H 1.07999 * 120.76245 * 0.04365 * 4 3 2 32 32 H 1.07997 * 120.36148 * 180.02562 * 5 4 3 33 33 H 1.07998 * 119.58787 * 180.02562 * 6 5 4 34 34 H 0.97007 * 120.00528 * 179.97438 * 15 14 12 35 35 H 1.08002 * 119.99836 * 0.02562 * 21 20 10 36 36 H 1.07998 * 120.00188 * 180.27563 * 22 21 20 37 37 H 1.08000 * 119.99809 * 179.83710 * 23 22 21 38 38 H 1.07998 * 119.99908 * 179.97438 * 24 23 22 39 39 H 1.07996 * 120.00266 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3646 2.0471 -1.1888 5 6 2.8236 3.3560 -1.1417 6 6 2.9337 3.9897 0.0803 7 7 2.6035 3.3682 1.1965 8 6 2.1675 2.1194 1.1926 9 8 1.8447 1.5169 2.3645 10 6 2.0062 2.2880 3.5566 11 1 1.8538 3.3433 3.3301 12 6 3.3972 2.0869 4.1005 13 1 3.8788 1.1245 4.0090 14 6 4.0550 3.1313 4.7148 15 7 3.4328 4.2721 4.9172 16 14 5.8299 2.9260 5.2597 17 1 6.7367 3.3310 4.1557 18 1 6.0849 3.7794 6.4480 19 1 6.0793 1.5043 5.6087 20 6 0.9964 1.8437 4.5832 21 6 0.6715 0.5050 4.6988 22 6 -0.2516 0.0969 5.6433 23 6 -0.8565 1.0285 6.4662 24 6 -0.5355 2.3678 6.3471 25 6 0.3908 2.7754 5.4055 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8898 30 1 1.8932 -0.5138 0.8901 31 1 2.2687 1.5291 -2.1316 32 1 3.0911 3.8737 -2.0509 33 1 3.2899 5.0083 0.1226 34 1 3.8955 5.0069 5.3498 35 1 1.1416 -0.2224 4.0536 36 1 -0.5021 -0.9495 5.7366 37 1 -1.5796 0.7099 7.2024 38 1 -1.0084 3.0956 6.9897 39 1 0.6419 3.8217 5.3126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234577337.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:19 Heat of formation + Delta-G solvation = 13.228229 kcal Electronic energy + Delta-G solvation = -22051.748692 eV Core-core repulsion = 18924.245359 eV Total energy + Delta-G solvation = -3127.503333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95725 -38.39825 -36.70381 -34.27459 -33.00545 -31.14373 -30.54701 -30.00764 -28.73317 -26.73692 -23.95366 -23.65865 -22.28208 -21.60635 -20.92790 -20.08945 -17.34710 -16.83204 -16.53208 -15.61240 -15.19056 -14.59601 -14.46910 -14.25264 -14.03665 -13.67125 -13.42819 -13.01844 -12.82875 -12.68045 -12.51963 -12.23278 -11.86627 -11.77174 -11.62277 -11.18082 -10.98967 -10.94392 -10.79453 -10.56038 -10.37747 -10.23086 -9.68451 -9.40617 -9.11907 -8.64566 -8.56264 -8.06325 -7.78687 -7.53727 -6.15956 -4.22897 1.74454 1.94951 2.26595 2.28021 3.25592 3.31551 3.35034 4.11563 4.35548 4.46336 4.73797 4.98773 5.19608 5.21705 5.38661 5.39785 5.64192 5.67186 5.70402 5.74014 5.76654 5.83148 5.90086 6.11065 6.20848 6.31362 6.38341 6.41086 6.52468 6.54484 6.63054 6.75407 6.87449 6.92233 7.08297 7.27691 7.32041 7.40760 7.71189 7.75096 7.90353 8.05780 8.32762 8.69945 8.95086 9.43421 10.89334 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.007965 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.686487 B = 3514.621224 C = 5128.855916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.177 4.177 4 C -0.050 4.050 5 C -0.237 4.237 6 C 0.136 3.864 7 N -0.509 5.509 8 C 0.359 3.641 9 O -0.312 6.312 10 C 0.231 3.769 11 H 0.091 0.909 12 C -0.523 4.523 13 H 0.061 0.939 14 C 0.081 3.919 15 N -0.869 5.869 16 Si 0.896 3.104 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.032 4.032 21 C -0.113 4.113 22 C -0.133 4.133 23 C -0.149 4.149 24 C -0.130 4.130 25 C -0.102 4.102 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.265 0.735 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.261 -3.851 -7.546 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.180 4.180 4 C -0.075 4.075 5 C -0.258 4.258 6 C -0.022 4.022 7 N -0.231 5.231 8 C 0.179 3.821 9 O -0.218 6.218 10 C 0.177 3.823 11 H 0.108 0.892 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.125 4.125 15 N -0.505 5.505 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.032 4.032 21 C -0.131 4.131 22 C -0.151 4.151 23 C -0.168 4.168 24 C -0.148 4.148 25 C -0.120 4.120 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.281 -3.506 -6.550 9.115 hybrid contribution 1.185 -0.192 -0.230 1.222 sum -4.095 -3.698 -6.780 8.742 Atomic orbital electron populations 1.21704 0.95268 1.01091 1.01960 1.20214 0.95746 0.91982 1.02363 1.19882 1.08383 0.98325 0.91456 1.21101 0.95328 0.94316 0.96799 1.21771 1.08315 0.96556 0.99139 1.22416 0.93629 0.99099 0.87036 1.67602 1.14962 1.09449 1.31115 1.19676 0.88353 0.87410 0.86681 1.86122 1.78827 1.43282 1.13557 1.19233 0.92524 0.93684 0.76826 0.89165 1.21157 0.98241 0.97750 1.38855 0.92128 1.24878 0.98056 0.94709 0.94847 1.69886 1.36771 1.03269 1.40567 0.86527 0.84669 0.78317 0.78136 1.20430 1.21001 1.19745 1.20314 0.92506 0.92951 0.97475 1.20937 0.97772 0.96091 0.98290 1.20957 0.98584 0.98425 0.97124 1.20848 1.01680 0.93614 1.00626 1.20980 0.99153 0.95556 0.99075 1.21028 0.95098 1.00312 0.95592 0.92896 0.92147 0.93332 0.91945 0.90480 0.85516 0.85792 0.83518 0.92487 0.86725 0.87461 0.87584 0.87280 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 37.16 0.37 -1.58 16 2 C -0.07 -0.97 5.81 -27.89 -0.16 -1.13 16 3 C -0.18 -3.12 5.16 -104.32 -0.54 -3.66 16 4 C -0.05 -0.75 9.83 -39.31 -0.39 -1.14 16 5 C -0.24 -3.54 10.11 -39.43 -0.40 -3.94 16 6 C 0.14 2.43 11.18 -17.56 -0.20 2.24 16 7 N -0.51 -11.35 8.64 -13.33 -0.12 -11.47 16 8 C 0.36 7.77 7.43 -17.12 -0.13 7.64 16 9 O -0.31 -7.28 8.14 -18.71 -0.15 -7.43 16 10 C 0.23 5.85 2.17 -29.04 -0.06 5.79 16 11 H 0.09 2.50 6.10 -51.93 -0.32 2.18 16 12 C -0.52 -14.33 8.63 -34.44 -0.30 -14.62 16 13 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 14 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 15 N -0.87 -23.93 12.84 55.43 0.71 -23.22 16 16 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 20 C -0.03 -0.75 4.97 -104.62 -0.52 -1.27 16 21 C -0.11 -2.38 9.36 -39.58 -0.37 -2.75 16 22 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 23 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 24 C -0.13 -2.47 10.05 -39.58 -0.40 -2.86 16 25 C -0.10 -2.28 9.67 -39.58 -0.38 -2.66 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 30 H 0.08 1.26 7.71 -51.93 -0.40 0.85 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.15 2.27 8.06 -52.49 -0.42 1.84 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.11 2.36 7.71 -52.49 -0.40 1.96 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.13 2.95 8.05 -52.49 -0.42 2.53 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -29.51 336.81 -9.18 -38.69 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.31 Total: 5.72 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -4.36 Total: -23.73 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.60 Total: -34.68 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.15 Total: -7.43 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.51 -9.18 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234577337.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.922 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds