Wall clock time and date at job start Tue Mar 31 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35904 * 116.99772 * 2 1 4 4 C 1.38901 * 119.98114 * 359.97326 * 3 2 1 5 5 C 1.38281 * 120.23335 * 179.97438 * 4 3 2 6 6 C 1.37988 * 120.20269 * 359.76497 * 5 4 3 7 7 C 1.39604 * 119.96645 * 0.53691 * 6 5 4 8 8 C 1.47969 * 120.11867 * 179.71738 * 7 6 5 9 9 C 1.39893 * 119.45106 * 353.20451 * 8 7 6 10 10 C 1.36607 * 119.46709 * 179.97438 * 9 8 7 11 11 C 1.41303 * 118.41144 * 359.97438 * 10 9 8 12 12 C 1.41057 * 120.55210 * 179.72419 * 11 10 9 13 13 H 1.08000 * 120.00181 * 151.92012 * 12 11 10 14 14 C 1.40032 * 120.00045 * 331.92214 * 12 11 10 15 15 N 1.30783 * 119.99850 * 164.82561 * 14 12 11 16 16 Si 1.86805 * 119.99711 * 344.82515 * 14 12 11 17 17 H 1.48499 * 109.46933 * 93.28683 * 16 14 12 18 18 H 1.48502 * 109.46592 * 213.28402 * 16 14 12 19 19 H 1.48500 * 109.47187 * 333.28274 * 16 14 12 20 20 C 1.40948 * 118.89656 * 0.02562 * 11 10 9 21 21 C 1.50695 * 119.80240 * 179.97438 * 20 11 10 22 22 N 1.31264 * 120.39889 * 0.02562 * 20 11 10 23 23 C 1.38417 * 119.98298 * 180.02562 * 3 2 1 24 24 C 1.50697 * 120.10180 * 0.02562 * 23 3 2 25 25 H 1.08997 * 109.47598 * 300.00204 * 1 2 3 26 26 H 1.08997 * 109.47212 * 60.00261 * 1 2 3 27 27 H 1.09005 * 109.47110 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.88315 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.89574 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.01639 * 180.27312 * 6 5 4 31 31 H 1.07991 * 120.26397 * 359.97438 * 9 8 7 32 32 H 1.07994 * 120.79168 * 180.02562 * 10 9 8 33 33 H 0.97007 * 119.99816 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.47287 * 89.98994 * 21 20 11 35 35 H 1.09000 * 109.47325 * 209.99492 * 21 20 11 36 36 H 1.09001 * 109.46822 * 329.99310 * 21 20 11 37 37 H 1.08999 * 109.47419 * 263.18970 * 24 23 3 38 38 H 1.09003 * 109.47018 * 23.19573 * 24 23 3 39 39 H 1.09006 * 109.46998 * 143.18993 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2890 2.3756 -0.0006 5 6 1.9113 3.6105 0.0000 6 6 3.2887 3.6937 0.0060 7 6 4.0577 2.5285 0.0002 8 6 5.5349 2.6139 0.0002 9 6 6.1518 3.8618 -0.1380 10 6 7.5156 3.9411 -0.1375 11 6 8.2583 2.7474 0.0047 12 6 9.6686 2.7763 0.0055 13 1 10.2239 2.0192 0.5392 14 6 10.3487 3.7865 -0.6857 15 7 11.6181 3.9978 -0.4527 16 14 9.4425 4.8325 -1.9405 17 1 8.9338 6.0634 -1.2840 18 1 10.3714 5.2044 -3.0379 19 1 8.3024 4.0609 -2.4972 20 6 7.5666 1.5267 0.1393 21 6 8.3384 0.2414 0.2916 22 7 6.2542 1.5026 0.1318 23 6 3.4283 1.2830 -0.0005 24 6 4.2510 0.0204 -0.0017 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2107 2.3165 -0.0006 29 1 1.3175 4.5125 -0.0001 30 1 3.7716 4.6597 0.0108 31 1 5.5547 4.7553 -0.2443 32 1 8.0141 4.8933 -0.2424 33 1 12.0891 4.6979 -0.9312 34 1 8.5174 0.0482 1.3494 35 1 7.7637 -0.5803 -0.1356 36 1 9.2924 0.3266 -0.2287 37 1 4.5519 -0.2182 1.0184 38 1 3.6577 -0.7994 -0.4068 39 1 5.1384 0.1656 -0.6178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238983804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:00 Heat of formation + Delta-G solvation = 12.340635 kcal Electronic energy + Delta-G solvation = -21594.062574 eV Core-core repulsion = 18466.520752 eV Total energy + Delta-G solvation = -3127.541822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.98867 -38.87966 -36.98179 -34.28157 -32.63779 -32.26338 -31.19835 -29.47370 -27.54954 -27.07184 -26.38324 -24.76430 -22.32739 -21.78879 -20.60920 -20.01368 -17.83084 -17.36413 -16.10873 -15.81908 -15.59116 -15.20356 -14.96975 -14.66461 -13.87231 -13.62128 -13.30547 -13.07318 -12.96548 -12.77585 -12.38686 -12.17610 -11.90172 -11.69999 -11.59347 -11.51290 -11.42172 -11.24290 -10.89629 -10.81354 -10.71462 -10.53830 -10.24839 -9.91613 -9.65651 -8.69008 -8.48400 -7.99382 -7.73091 -7.38169 -7.25500 -4.70571 1.39826 1.85925 2.45820 2.63397 2.93753 3.05242 3.14299 3.49335 3.74414 4.07388 4.51289 5.01364 5.08856 5.15897 5.21838 5.27428 5.32691 5.45704 5.57722 5.77119 5.85354 5.87992 6.00974 6.12818 6.33515 6.36010 6.41613 6.52885 6.60287 6.62106 6.66069 6.74092 6.77905 6.84151 6.99936 7.01332 7.18789 7.31801 7.40921 7.51388 7.70550 7.74131 8.00915 8.28195 8.43722 9.32261 9.72363 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028461 B = 0.004578 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.573045 B = 6114.359779 C = 6870.340087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.119 3.881 4 C -0.230 4.230 5 C -0.088 4.088 6 C -0.163 4.163 7 C 0.045 3.955 8 C -0.006 4.006 9 C -0.095 4.095 10 C -0.218 4.218 11 C 0.051 3.949 12 C -0.407 4.407 13 H 0.102 0.898 14 C 0.080 3.920 15 N -0.785 5.785 16 Si 0.916 3.084 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.242 1.242 20 C 0.026 3.974 21 C -0.075 4.075 22 N -0.428 5.428 23 C -0.103 4.103 24 C -0.094 4.094 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.292 0.708 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.040 0.960 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 -1.767 -0.866 13.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.229 6.229 3 C 0.075 3.925 4 C -0.250 4.250 5 C -0.106 4.106 6 C -0.183 4.183 7 C 0.044 3.956 8 C -0.137 4.137 9 C -0.115 4.115 10 C -0.242 4.242 11 C 0.046 3.954 12 C -0.435 4.435 13 H 0.120 0.880 14 C -0.143 4.143 15 N -0.407 5.407 16 Si 0.743 3.257 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.165 1.165 20 C -0.121 4.121 21 C -0.133 4.133 22 N -0.136 5.136 23 C -0.105 4.105 24 C -0.150 4.150 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.458 -2.618 -0.800 13.734 hybrid contribution -0.136 1.842 -0.513 1.916 sum -13.594 -0.776 -1.313 13.679 Atomic orbital electron populations 1.22949 0.79441 1.03206 1.00937 1.86065 1.20407 1.27317 1.89155 1.18748 0.91793 0.83739 0.98247 1.21020 0.99073 0.92480 1.12380 1.20636 0.94295 0.96444 0.99251 1.21065 0.93339 0.97880 1.05979 1.18323 0.91315 0.91342 0.94575 1.18671 0.90602 0.89207 1.15237 1.21190 0.94889 0.97005 0.98466 1.21007 0.93681 0.97694 1.11856 1.18521 0.94413 0.91617 0.90888 1.19650 0.90027 1.09006 1.24800 0.87978 1.26343 0.95004 0.95795 0.97137 1.69635 1.10268 1.26686 1.34116 0.86241 0.79987 0.80076 0.79432 1.19335 1.21470 1.16549 1.21121 0.88874 0.94192 1.07958 1.20320 0.98971 0.93143 1.00858 1.67158 1.07451 1.29774 1.09228 1.19371 0.89787 0.96347 1.04994 1.20840 0.99432 0.91936 1.02799 0.93092 0.93103 0.88803 0.86452 0.86542 0.86121 0.87521 0.87255 0.89741 0.92827 0.92750 0.91071 0.92087 0.94074 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.83 9.43 -19.44 -0.18 -5.01 16 3 C 0.12 2.02 6.65 -39.27 -0.26 1.76 16 4 C -0.23 -3.42 9.04 -39.32 -0.36 -3.78 16 5 C -0.09 -1.31 10.03 -39.66 -0.40 -1.71 16 6 C -0.16 -2.81 9.40 -39.16 -0.37 -3.18 16 7 C 0.05 0.90 5.87 -104.91 -0.62 0.29 16 8 C -0.01 -0.13 6.67 -82.74 -0.55 -0.68 16 9 C -0.10 -2.07 9.37 -39.55 -0.37 -2.44 16 10 C -0.22 -5.06 7.10 -39.01 -0.28 -5.34 16 11 C 0.05 1.23 5.19 -106.64 -0.55 0.68 16 12 C -0.41 -10.05 8.61 -37.84 -0.33 -10.38 16 13 H 0.10 2.58 7.15 -52.49 -0.38 2.20 16 14 C 0.08 1.91 5.46 -17.33 -0.09 1.82 16 15 N -0.79 -19.13 13.93 55.55 0.77 -18.36 16 16 Si 0.92 19.48 24.40 -169.99 -4.15 15.33 16 17 H -0.27 -5.49 6.63 56.52 0.37 -5.12 16 18 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.24 -5.40 6.72 56.52 0.38 -5.02 16 20 C 0.03 0.60 6.86 -81.81 -0.56 0.04 16 21 C -0.08 -1.47 9.59 36.00 0.35 -1.13 16 22 N -0.43 -9.69 6.08 -5.39 -0.03 -9.72 16 23 C -0.10 -1.99 5.93 -104.07 -0.62 -2.60 16 24 C -0.09 -1.76 8.41 36.00 0.30 -1.46 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 26 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.12 1.39 6.28 -52.49 -0.33 1.07 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.12 1.90 6.20 -52.49 -0.33 1.57 16 31 H 0.11 2.00 6.20 -52.49 -0.33 1.67 16 32 H 0.11 2.47 4.31 -52.49 -0.23 2.24 16 33 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.38 6.81 -51.93 -0.35 1.03 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.04 0.71 7.33 -51.93 -0.38 0.33 16 39 H 0.10 2.05 5.64 -51.93 -0.29 1.76 16 LS Contribution 312.42 15.07 4.71 4.71 Total: -1.00 -27.02 312.42 -7.29 -34.32 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.70 Total: 5.54 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -3.71 Total: -26.81 kcal Atomic # 7 Polarization: -28.82 SS G_CDS: 0.74 Total: -28.08 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.18 Total: -5.01 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.15 Total: 15.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.02 -7.29 -34.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238983804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.656 kcal (2) G-P(sol) polarization free energy of solvation -27.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds