Wall clock time and date at job start Tue Mar 31 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35904 * 116.99772 * 2 1 4 4 C 1.38901 * 119.98114 * 359.97326 * 3 2 1 5 5 C 1.38281 * 120.23335 * 179.97438 * 4 3 2 6 6 C 1.37988 * 120.20269 * 359.76497 * 5 4 3 7 7 C 1.39604 * 119.96645 * 0.53691 * 6 5 4 8 8 C 1.47969 * 120.11867 * 179.71738 * 7 6 5 9 9 C 1.39893 * 119.45106 * 353.20451 * 8 7 6 10 10 C 1.36607 * 119.46709 * 179.97438 * 9 8 7 11 11 C 1.41303 * 118.41144 * 359.97438 * 10 9 8 12 12 C 1.41057 * 120.55210 * 179.72419 * 11 10 9 13 13 H 1.08000 * 120.00181 * 151.92012 * 12 11 10 14 14 C 1.40032 * 120.00045 * 331.92214 * 12 11 10 15 15 N 1.30783 * 119.99850 * 164.82561 * 14 12 11 16 16 Si 1.86805 * 119.99711 * 344.82515 * 14 12 11 17 17 H 1.48499 * 109.46933 * 93.28683 * 16 14 12 18 18 H 1.48502 * 109.46592 * 213.28402 * 16 14 12 19 19 H 1.48500 * 109.47187 * 333.28274 * 16 14 12 20 20 C 1.40948 * 118.89656 * 0.02562 * 11 10 9 21 21 C 1.50695 * 119.80240 * 179.97438 * 20 11 10 22 22 N 1.31264 * 120.39889 * 0.02562 * 20 11 10 23 23 C 1.38417 * 119.98298 * 180.02562 * 3 2 1 24 24 C 1.50697 * 120.10180 * 0.02562 * 23 3 2 25 25 H 1.08997 * 109.47598 * 300.00204 * 1 2 3 26 26 H 1.08997 * 109.47212 * 60.00261 * 1 2 3 27 27 H 1.09005 * 109.47110 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.88315 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.89574 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.01639 * 180.27312 * 6 5 4 31 31 H 1.07991 * 120.26397 * 359.97438 * 9 8 7 32 32 H 1.07994 * 120.79168 * 180.02562 * 10 9 8 33 33 H 0.97007 * 119.99816 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.47287 * 89.98994 * 21 20 11 35 35 H 1.09000 * 109.47325 * 209.99492 * 21 20 11 36 36 H 1.09001 * 109.46822 * 329.99310 * 21 20 11 37 37 H 1.08999 * 109.47419 * 263.18970 * 24 23 3 38 38 H 1.09003 * 109.47018 * 23.19573 * 24 23 3 39 39 H 1.09006 * 109.46998 * 143.18993 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2890 2.3756 -0.0006 5 6 1.9113 3.6105 0.0000 6 6 3.2887 3.6937 0.0060 7 6 4.0577 2.5285 0.0002 8 6 5.5349 2.6139 0.0002 9 6 6.1518 3.8618 -0.1380 10 6 7.5156 3.9411 -0.1375 11 6 8.2583 2.7474 0.0047 12 6 9.6686 2.7763 0.0055 13 1 10.2239 2.0192 0.5392 14 6 10.3487 3.7865 -0.6857 15 7 11.6181 3.9978 -0.4527 16 14 9.4425 4.8325 -1.9405 17 1 8.9338 6.0634 -1.2840 18 1 10.3714 5.2044 -3.0379 19 1 8.3024 4.0609 -2.4972 20 6 7.5666 1.5267 0.1393 21 6 8.3384 0.2414 0.2916 22 7 6.2542 1.5026 0.1318 23 6 3.4283 1.2830 -0.0005 24 6 4.2510 0.0204 -0.0017 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2107 2.3165 -0.0006 29 1 1.3175 4.5125 -0.0001 30 1 3.7716 4.6597 0.0108 31 1 5.5547 4.7553 -0.2443 32 1 8.0141 4.8933 -0.2424 33 1 12.0891 4.6979 -0.9312 34 1 8.5174 0.0482 1.3494 35 1 7.7637 -0.5803 -0.1356 36 1 9.2924 0.3266 -0.2287 37 1 4.5519 -0.2182 1.0184 38 1 3.6577 -0.7994 -0.4068 39 1 5.1384 0.1656 -0.6178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238983804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:00 Heat of formation + Delta-G solvation = -1.448727 kcal Electronic energy + Delta-G solvation = -21594.660526 eV Core-core repulsion = 18466.520752 eV Total energy + Delta-G solvation = -3128.139774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33398 -40.42878 -38.25620 -36.00435 -34.13025 -33.90934 -32.78811 -30.87274 -28.99873 -28.28581 -27.74230 -26.35982 -23.95487 -23.30483 -21.99080 -21.53618 -19.52490 -18.70307 -17.66011 -17.26173 -16.61408 -16.54525 -16.45481 -16.20447 -15.48933 -15.26068 -14.73890 -14.47810 -14.41429 -14.20829 -13.83215 -13.75356 -13.47504 -13.12689 -13.01244 -12.90339 -12.83299 -12.77610 -12.48576 -12.22671 -12.09694 -11.87625 -11.76668 -11.53246 -11.38642 -10.32036 -10.10005 -9.69843 -9.07155 -9.03529 -8.92462 -6.54043 -0.07176 0.58043 0.74182 0.96401 1.22815 1.36962 1.43867 2.03177 2.45634 2.50068 2.95946 3.51454 3.61204 3.96023 4.02910 4.17772 4.23791 4.30655 4.37957 4.45088 4.48362 4.59634 4.66121 4.75456 4.76827 4.88312 4.94531 4.97802 4.98860 5.04943 5.10162 5.14216 5.42082 5.44542 5.45834 5.54931 5.64393 5.72373 5.83435 5.90308 6.05423 6.19238 6.50416 6.57285 6.62763 7.56651 8.00715 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028461 B = 0.004578 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.573045 B = 6114.359779 C = 6870.340087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.114 3.886 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.167 4.167 7 C 0.010 3.990 8 C -0.001 4.001 9 C -0.105 4.105 10 C -0.227 4.227 11 C 0.033 3.967 12 C -0.439 4.439 13 H 0.080 0.920 14 C 0.052 3.948 15 N -0.821 5.821 16 Si 0.962 3.038 17 H -0.253 1.253 18 H -0.274 1.274 19 H -0.261 1.261 20 C 0.008 3.992 21 C -0.069 4.069 22 N -0.437 5.437 23 C -0.129 4.129 24 C -0.083 4.083 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.116 0.884 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.300 0.700 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.533 -0.738 -1.289 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.069 3.931 4 C -0.234 4.234 5 C -0.098 4.098 6 C -0.186 4.186 7 C 0.009 3.991 8 C -0.133 4.133 9 C -0.125 4.125 10 C -0.251 4.251 11 C 0.028 3.972 12 C -0.468 4.468 13 H 0.098 0.902 14 C -0.167 4.167 15 N -0.445 5.445 16 Si 0.786 3.214 17 H -0.178 1.178 18 H -0.200 1.200 19 H -0.185 1.185 20 C -0.138 4.138 21 C -0.126 4.126 22 N -0.146 5.146 23 C -0.130 4.130 24 C -0.140 4.140 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.172 0.828 29 H 0.175 0.825 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.588 -1.604 -1.215 17.702 hybrid contribution 0.694 1.394 -0.334 1.593 sum -16.894 -0.210 -1.549 16.966 Atomic orbital electron populations 1.23324 0.76641 1.05341 1.02223 1.86044 1.23273 1.26739 1.88877 1.18837 0.91241 0.85239 0.97820 1.21490 1.00907 0.91568 1.09475 1.21099 0.93527 0.98096 0.97064 1.21311 0.94518 0.97373 1.05378 1.18415 0.90125 0.92952 0.97630 1.19344 0.92304 0.89233 1.12443 1.21517 0.94591 0.98222 0.98163 1.21203 0.94520 0.97595 1.11792 1.18700 0.94383 0.92572 0.91532 1.19543 0.90417 1.09830 1.26971 0.90212 1.26843 0.95469 0.96393 0.97972 1.69643 1.11148 1.28098 1.35657 0.85552 0.78652 0.79098 0.78085 1.17829 1.20010 1.18536 1.21604 0.89403 0.95102 1.07712 1.20292 0.98539 0.92383 1.01415 1.67326 1.07190 1.30282 1.09757 1.19500 0.91336 0.95927 1.06266 1.20653 0.98866 0.92786 1.01692 0.91705 0.91673 0.86566 0.82769 0.82506 0.84851 0.84335 0.86774 0.88860 0.92035 0.91298 0.91561 0.93177 0.93146 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.27 9.43 -92.47 -0.87 -10.14 16 3 C 0.11 3.52 6.65 22.47 0.15 3.67 16 4 C -0.22 -5.34 9.04 22.44 0.20 -5.14 16 5 C -0.08 -1.98 10.03 22.22 0.22 -1.75 16 6 C -0.17 -5.18 9.40 22.54 0.21 -4.96 16 7 C 0.01 0.37 5.87 -20.05 -0.12 0.25 16 8 C 0.00 -0.02 6.67 41.95 0.28 0.26 16 9 C -0.11 -4.49 9.37 22.29 0.21 -4.28 16 10 C -0.23 -10.57 7.10 22.64 0.16 -10.41 16 11 C 0.03 1.65 5.19 -21.17 -0.11 1.54 16 12 C -0.44 -22.83 8.61 23.40 0.20 -22.63 16 13 H 0.08 4.34 7.15 -2.91 -0.02 4.32 16 14 C 0.05 2.58 5.46 85.28 0.47 3.04 16 15 N -0.82 -41.46 13.93 21.84 0.30 -41.16 16 16 Si 0.96 40.42 24.40 68.60 1.67 42.10 16 17 H -0.25 -9.94 6.63 99.48 0.66 -9.28 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 19 H -0.26 -11.65 6.72 99.48 0.67 -10.98 16 20 C 0.01 0.36 6.86 43.31 0.30 0.66 16 21 C -0.07 -2.80 9.59 71.23 0.68 -2.12 16 22 N -0.44 -20.15 6.08 -170.97 -1.04 -21.19 16 23 C -0.13 -4.78 5.93 -19.51 -0.12 -4.90 16 24 C -0.08 -3.15 8.41 71.23 0.60 -2.55 16 25 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 26 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 27 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.15 2.67 6.28 -2.91 -0.02 2.65 16 29 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.13 3.70 6.20 -2.91 -0.02 3.68 16 31 H 0.14 4.87 6.20 -2.92 -0.02 4.85 16 32 H 0.11 5.12 4.31 -2.91 -0.01 5.11 16 33 H 0.30 13.54 8.30 -92.70 -0.77 12.77 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.72 6.81 -2.39 -0.02 2.71 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.73 7.33 -2.39 -0.02 1.72 16 39 H 0.08 3.36 5.64 -2.38 -0.01 3.34 16 Total: -1.00 -60.54 312.42 5.51 -55.03 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.99 Total: 23.27 kcal Atomic # 6 Polarization: -52.35 SS G_CDS: 4.45 Total: -47.90 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.74 Total: -62.35 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.87 Total: -10.14 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.67 Total: 42.10 kcal Total: -60.54 5.51 -55.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238983804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.578 kcal (2) G-P(sol) polarization free energy of solvation -60.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds