Wall clock time and date at job start Tue Mar 31 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47235 * 2 1 4 4 O 1.42895 * 109.47442 * 120.00309 * 2 1 3 5 5 C 1.50711 * 109.47158 * 240.00538 * 2 1 3 6 6 C 1.33014 * 119.99785 * 240.00257 * 5 2 1 7 7 C 1.47240 * 119.99799 * 180.02562 * 6 5 2 8 8 N 1.31761 * 119.46913 * 359.72428 * 7 6 5 9 9 C 1.33586 * 121.73489 * 179.76052 * 8 7 6 10 10 C 1.40520 * 120.96476 * 180.30276 * 9 8 7 11 11 C 1.36235 * 119.70741 * 180.24711 * 10 9 8 12 12 C 1.39174 * 121.75071 * 359.96470 * 11 10 9 13 13 C 1.36122 * 121.48045 * 0.02562 * 12 11 10 14 14 C 1.40793 * 119.47384 * 359.97438 * 13 12 11 15 15 C 1.40009 * 121.39226 * 180.02562 * 14 13 12 16 16 C 1.40380 * 117.98359 * 179.97438 * 15 14 13 17 17 C 1.40770 * 120.41698 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99738 * 154.55479 * 17 16 15 19 19 C 1.40113 * 119.99874 * 334.54911 * 17 16 15 20 20 N 1.30754 * 120.00215 * 343.22405 * 19 17 16 21 21 Si 1.86794 * 119.99954 * 163.22502 * 19 17 16 22 22 H 1.48508 * 109.47196 * 94.66442 * 21 19 17 23 23 H 1.48501 * 109.47462 * 214.66059 * 21 19 17 24 24 H 1.48497 * 109.47040 * 334.66525 * 21 19 17 25 25 H 1.09001 * 109.47451 * 59.99838 * 1 2 3 26 26 H 1.09000 * 109.47434 * 299.99886 * 1 2 3 27 27 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46503 * 60.00126 * 3 2 1 29 29 H 1.08996 * 109.46856 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47033 * 300.00418 * 3 2 1 31 31 H 0.96707 * 113.99549 * 60.00049 * 4 2 1 32 32 H 1.07995 * 120.00086 * 59.99781 * 5 2 1 33 33 H 1.07995 * 120.00129 * 359.97438 * 6 5 2 34 34 H 1.08000 * 120.14514 * 0.20977 * 10 9 8 35 35 H 1.08001 * 119.12025 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.25822 * 180.02562 * 12 11 10 37 37 H 1.07996 * 120.26453 * 179.97438 * 13 12 11 38 38 H 1.07994 * 121.00652 * 359.95997 * 15 14 13 39 39 H 0.96994 * 120.00237 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0323 -0.7103 -1.2306 6 6 2.7970 -1.7919 -1.1086 7 6 3.2883 -2.4855 -2.3109 8 7 2.9596 -2.0291 -3.5024 9 6 3.3837 -2.6201 -4.6228 10 6 3.0283 -2.1158 -5.8854 11 6 3.4711 -2.7418 -7.0114 12 6 4.2738 -3.8771 -6.9507 13 6 4.6539 -4.4160 -5.7600 14 6 4.2285 -3.8147 -4.5601 15 6 4.5961 -4.3349 -3.3133 16 6 4.1321 -3.6780 -2.1627 17 6 4.4701 -4.1574 -0.8831 18 1 4.4853 -3.4824 -0.0402 19 6 4.7868 -5.5104 -0.7030 20 7 4.4607 -6.3856 -1.6180 21 14 5.6749 -6.0638 0.8443 22 1 4.6812 -6.5211 1.8487 23 1 6.5951 -7.1816 0.5141 24 1 6.4543 -4.9287 1.4004 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6766 1.9563 0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.7210 -1.5953 1.2327 32 1 1.7714 -0.3413 -2.2114 33 1 3.0582 -2.1607 -0.1278 34 1 2.4065 -1.2362 -5.9626 35 1 3.1920 -2.3463 -7.9769 36 1 4.6024 -4.3409 -7.8690 37 1 5.2769 -5.2979 -5.7358 38 1 5.2175 -5.2150 -3.2390 39 1 4.6802 -7.3221 -1.4935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239148880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:32 Heat of formation + Delta-G solvation = -6.721273 kcal Electronic energy + Delta-G solvation = -21384.250092 eV Core-core repulsion = 18255.881684 eV Total energy + Delta-G solvation = -3128.368408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.01058 -38.16444 -36.10008 -34.31307 -32.61246 -31.71638 -31.33261 -29.44179 -28.16020 -27.14372 -25.64282 -23.62296 -21.89665 -20.94106 -20.49964 -18.94133 -18.10661 -16.84794 -16.19825 -15.84715 -15.36069 -14.86074 -14.51469 -14.24588 -13.47547 -13.41154 -13.05162 -12.91660 -12.61821 -12.50334 -12.08585 -11.98882 -11.87926 -11.75883 -11.57395 -11.37626 -11.25778 -11.13451 -10.92495 -10.76309 -10.60678 -10.49366 -9.94610 -9.68395 -9.61400 -9.01812 -8.86434 -8.30349 -7.36304 -7.12706 -6.99728 -4.58608 1.37423 1.98398 2.81697 2.83843 2.91484 2.97362 3.53449 3.69117 4.05283 4.47301 4.62241 5.07153 5.17746 5.29000 5.40779 5.54788 5.64662 5.68960 5.73662 5.89264 5.92441 5.99040 6.01993 6.14114 6.20177 6.22743 6.27698 6.38424 6.42232 6.65347 6.75815 6.90249 6.98640 7.19486 7.23755 7.35443 7.40983 7.44716 7.67825 7.72001 7.90651 7.94081 8.23826 8.41361 8.50961 9.24084 9.80573 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.007470 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.294153 B = 3747.396946 C = 6402.708130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.160 3.840 3 C -0.131 4.131 4 O -0.562 6.562 5 C -0.197 4.197 6 C -0.065 4.065 7 C 0.103 3.897 8 N -0.460 5.460 9 C 0.024 3.976 10 C -0.060 4.060 11 C -0.180 4.180 12 C -0.118 4.118 13 C -0.131 4.131 14 C -0.045 4.045 15 C -0.178 4.178 16 C 0.075 3.925 17 C -0.424 4.424 18 H 0.091 0.909 19 C 0.071 3.929 20 N -0.768 5.768 21 Si 0.914 3.086 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.255 1.255 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.378 0.622 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 4.868 1.342 5.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.120 3.880 3 C -0.188 4.188 4 O -0.369 6.369 5 C -0.219 4.219 6 C -0.083 4.083 7 C -0.050 4.050 8 N -0.167 5.167 9 C -0.099 4.099 10 C -0.079 4.079 11 C -0.201 4.201 12 C -0.136 4.136 13 C -0.150 4.150 14 C -0.047 4.047 15 C -0.203 4.203 16 C 0.070 3.930 17 C -0.452 4.452 18 H 0.109 0.891 19 C -0.151 4.151 20 N -0.390 5.390 21 Si 0.737 3.263 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.179 1.179 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.226 0.774 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.148 0.852 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.103 5.894 1.192 6.767 hybrid contribution 0.622 -1.847 0.377 1.985 sum -2.481 4.047 1.569 4.999 Atomic orbital electron populations 1.22418 0.95794 1.02471 1.02155 1.20087 0.92050 0.92460 0.83425 1.21670 1.02139 0.93311 1.01707 1.86498 1.77451 1.29197 1.43753 1.23850 1.01383 0.97949 0.98703 1.21439 0.96055 0.94452 0.96371 1.21272 0.97628 0.95939 0.90193 1.67403 1.21264 1.30148 0.97864 1.19301 1.03223 0.95893 0.91492 1.20490 0.98188 0.98394 0.90806 1.20246 1.03822 0.98806 0.97210 1.20463 0.99329 0.96840 0.96964 1.20850 1.02053 1.00050 0.92059 1.19705 0.96407 0.94358 0.94236 1.21484 1.05676 1.03744 0.89408 1.19281 0.89030 0.90339 0.94317 1.19649 1.36864 0.93794 0.94901 0.89108 1.26098 0.93626 0.96586 0.98745 1.69773 1.31766 1.03877 1.33629 0.86178 0.79968 0.79423 0.80740 1.19072 1.19697 1.17882 0.91647 0.92224 0.92267 0.92348 0.91854 0.91314 0.77410 0.85889 0.85542 0.87054 0.87773 0.87911 0.87181 0.85185 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 8.80 37.16 0.33 -1.78 16 2 C 0.16 2.33 1.37 -91.77 -0.13 2.20 16 3 C -0.13 -1.72 8.83 37.16 0.33 -1.39 16 4 O -0.56 -8.47 11.96 -35.23 -0.42 -8.89 16 5 C -0.20 -3.48 8.33 -36.12 -0.30 -3.78 16 6 C -0.06 -1.30 8.66 -37.74 -0.33 -1.63 16 7 C 0.10 2.46 6.89 -80.77 -0.56 1.90 16 8 N -0.46 -11.06 9.20 -4.94 -0.05 -11.10 16 9 C 0.02 0.58 6.75 -82.94 -0.56 0.02 16 10 C -0.06 -1.24 9.98 -39.44 -0.39 -1.64 16 11 C -0.18 -3.35 9.90 -39.95 -0.40 -3.75 16 12 C -0.12 -2.21 9.91 -39.99 -0.40 -2.60 16 13 C -0.13 -2.77 9.80 -39.38 -0.39 -3.16 16 14 C -0.04 -1.08 5.87 -104.96 -0.62 -1.70 16 15 C -0.18 -4.52 8.54 -38.11 -0.33 -4.85 16 16 C 0.08 1.90 5.72 -104.66 -0.60 1.31 16 17 C -0.42 -10.12 8.45 -37.92 -0.32 -10.44 16 18 H 0.09 2.03 6.57 -52.49 -0.34 1.68 16 19 C 0.07 1.61 5.17 -17.31 -0.09 1.52 16 20 N -0.77 -18.21 10.97 55.56 0.61 -17.60 16 21 Si 0.91 16.89 29.59 -169.99 -5.03 11.86 16 22 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 23 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 24 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.38 4.83 8.06 45.56 0.37 5.20 16 32 H 0.12 2.29 7.36 -52.49 -0.39 1.90 16 33 H 0.13 2.41 4.96 -52.49 -0.26 2.15 16 34 H 0.11 2.08 8.06 -52.49 -0.42 1.65 16 35 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.13 3.34 6.27 -52.49 -0.33 3.01 16 39 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -27.39 328.60 -8.99 -36.38 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -4.31 Total: 14.16 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -4.74 Total: -29.75 kcal Atomic # 7 Polarization: -29.27 SS G_CDS: 0.56 Total: -28.70 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.42 Total: -8.89 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.39 -8.99 -36.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239148880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.657 kcal (2) G-P(sol) polarization free energy of solvation -27.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds