Wall clock time and date at job start Tue Mar 31 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47235 * 2 1 4 4 O 1.42895 * 109.47442 * 120.00309 * 2 1 3 5 5 C 1.50711 * 109.47158 * 240.00538 * 2 1 3 6 6 C 1.33014 * 119.99785 * 240.00257 * 5 2 1 7 7 C 1.47240 * 119.99799 * 180.02562 * 6 5 2 8 8 N 1.31761 * 119.46913 * 359.72428 * 7 6 5 9 9 C 1.33586 * 121.73489 * 179.76052 * 8 7 6 10 10 C 1.40520 * 120.96476 * 180.30276 * 9 8 7 11 11 C 1.36235 * 119.70741 * 180.24711 * 10 9 8 12 12 C 1.39174 * 121.75071 * 359.96470 * 11 10 9 13 13 C 1.36122 * 121.48045 * 0.02562 * 12 11 10 14 14 C 1.40793 * 119.47384 * 359.97438 * 13 12 11 15 15 C 1.40009 * 121.39226 * 180.02562 * 14 13 12 16 16 C 1.40380 * 117.98359 * 179.97438 * 15 14 13 17 17 C 1.40770 * 120.41698 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99738 * 154.55479 * 17 16 15 19 19 C 1.40113 * 119.99874 * 334.54911 * 17 16 15 20 20 N 1.30754 * 120.00215 * 343.22405 * 19 17 16 21 21 Si 1.86794 * 119.99954 * 163.22502 * 19 17 16 22 22 H 1.48508 * 109.47196 * 94.66442 * 21 19 17 23 23 H 1.48501 * 109.47462 * 214.66059 * 21 19 17 24 24 H 1.48497 * 109.47040 * 334.66525 * 21 19 17 25 25 H 1.09001 * 109.47451 * 59.99838 * 1 2 3 26 26 H 1.09000 * 109.47434 * 299.99886 * 1 2 3 27 27 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46503 * 60.00126 * 3 2 1 29 29 H 1.08996 * 109.46856 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47033 * 300.00418 * 3 2 1 31 31 H 0.96707 * 113.99549 * 60.00049 * 4 2 1 32 32 H 1.07995 * 120.00086 * 59.99781 * 5 2 1 33 33 H 1.07995 * 120.00129 * 359.97438 * 6 5 2 34 34 H 1.08000 * 120.14514 * 0.20977 * 10 9 8 35 35 H 1.08001 * 119.12025 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.25822 * 180.02562 * 12 11 10 37 37 H 1.07996 * 120.26453 * 179.97438 * 13 12 11 38 38 H 1.07994 * 121.00652 * 359.95997 * 15 14 13 39 39 H 0.96994 * 120.00237 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0323 -0.7103 -1.2306 6 6 2.7970 -1.7919 -1.1086 7 6 3.2883 -2.4855 -2.3109 8 7 2.9596 -2.0291 -3.5024 9 6 3.3837 -2.6201 -4.6228 10 6 3.0283 -2.1158 -5.8854 11 6 3.4711 -2.7418 -7.0114 12 6 4.2738 -3.8771 -6.9507 13 6 4.6539 -4.4160 -5.7600 14 6 4.2285 -3.8147 -4.5601 15 6 4.5961 -4.3349 -3.3133 16 6 4.1321 -3.6780 -2.1627 17 6 4.4701 -4.1574 -0.8831 18 1 4.4853 -3.4824 -0.0402 19 6 4.7868 -5.5104 -0.7030 20 7 4.4607 -6.3856 -1.6180 21 14 5.6749 -6.0638 0.8443 22 1 4.6812 -6.5211 1.8487 23 1 6.5951 -7.1816 0.5141 24 1 6.4543 -4.9287 1.4004 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6766 1.9563 0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.7210 -1.5953 1.2327 32 1 1.7714 -0.3413 -2.2114 33 1 3.0582 -2.1607 -0.1278 34 1 2.4065 -1.2362 -5.9626 35 1 3.1920 -2.3463 -7.9769 36 1 4.6024 -4.3409 -7.8690 37 1 5.2769 -5.2979 -5.7358 38 1 5.2175 -5.2150 -3.2390 39 1 4.6802 -7.3221 -1.4935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239148880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:32 Heat of formation + Delta-G solvation = -21.820842 kcal Electronic energy + Delta-G solvation = -21384.904859 eV Core-core repulsion = 18255.881684 eV Total energy + Delta-G solvation = -3129.023175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69040 -39.41987 -37.72391 -36.03939 -33.97256 -33.41358 -32.70698 -31.13025 -29.75362 -28.15273 -27.38064 -25.18917 -23.59478 -22.51397 -21.98299 -20.35756 -19.80803 -18.39818 -17.80095 -17.29675 -16.94835 -16.41333 -15.78347 -15.52371 -15.06874 -14.96324 -14.78701 -14.46995 -14.13159 -13.64697 -13.60205 -13.46136 -13.10219 -13.03338 -12.98646 -12.83374 -12.74033 -12.54657 -12.46048 -12.27024 -12.05459 -11.83513 -11.53274 -11.31381 -10.99277 -10.75080 -10.38964 -10.09833 -9.10361 -8.81927 -8.66663 -6.39430 -0.28427 0.28864 1.23393 1.34182 1.38870 1.52923 1.81418 2.13580 2.40493 2.91777 3.34143 3.66405 3.74906 3.88752 4.01661 4.06990 4.20806 4.26020 4.42447 4.49256 4.58613 4.62287 4.73066 4.79321 4.89111 4.91524 4.98259 5.03790 5.11725 5.21352 5.26992 5.34596 5.36422 5.53364 5.68823 5.73310 5.77969 5.88719 5.93995 5.95724 6.25311 6.46181 6.64145 6.72299 6.82733 7.44157 8.13524 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.007470 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.294153 B = 3747.396946 C = 6402.708130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.158 3.842 3 C -0.131 4.131 4 O -0.572 6.572 5 C -0.162 4.162 6 C -0.097 4.097 7 C 0.090 3.910 8 N -0.472 5.472 9 C -0.006 4.006 10 C -0.076 4.076 11 C -0.164 4.164 12 C -0.103 4.103 13 C -0.154 4.154 14 C -0.069 4.069 15 C -0.210 4.210 16 C 0.045 3.955 17 C -0.447 4.447 18 H 0.097 0.903 19 C 0.034 3.966 20 N -0.803 5.803 21 Si 0.987 3.013 22 H -0.256 1.256 23 H -0.267 1.267 24 H -0.254 1.254 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.386 0.614 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 5.959 0.909 7.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.117 3.883 3 C -0.188 4.188 4 O -0.380 6.380 5 C -0.184 4.184 6 C -0.115 4.115 7 C -0.064 4.064 8 N -0.179 5.179 9 C -0.129 4.129 10 C -0.094 4.094 11 C -0.184 4.184 12 C -0.121 4.121 13 C -0.173 4.173 14 C -0.071 4.071 15 C -0.236 4.236 16 C 0.040 3.960 17 C -0.475 4.475 18 H 0.115 0.885 19 C -0.185 4.185 20 N -0.426 5.426 21 Si 0.806 3.194 22 H -0.180 1.180 23 H -0.191 1.191 24 H -0.178 1.178 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.235 0.765 32 H 0.132 0.868 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.855 6.988 0.734 8.015 hybrid contribution 0.771 -2.086 0.332 2.249 sum -3.084 4.902 1.066 5.889 Atomic orbital electron populations 1.22363 0.93540 1.02774 1.03598 1.20264 0.93655 0.92709 0.81646 1.21708 1.01277 0.92395 1.03445 1.86485 1.77893 1.29981 1.43633 1.24125 0.98249 0.96080 0.99924 1.21384 0.98670 0.96109 0.95347 1.21783 0.97298 0.95845 0.91432 1.67459 1.21911 1.30476 0.98091 1.19875 1.03811 0.96327 0.92851 1.20793 0.99027 0.99456 0.90159 1.20781 1.01593 0.97675 0.98377 1.20959 0.97453 0.96185 0.97512 1.21052 1.03199 1.00914 0.92155 1.20032 0.97013 0.95068 0.94994 1.21434 1.07241 1.04304 0.90601 1.19664 0.89918 0.91382 0.95015 1.19889 1.38091 0.94784 0.94738 0.88502 1.26970 0.93605 0.96077 1.01815 1.69835 1.32670 1.04477 1.35605 0.85105 0.78737 0.78833 0.76720 1.17989 1.19140 1.17776 0.90666 0.90332 0.92601 0.90485 0.93299 0.89773 0.76481 0.86772 0.85059 0.85250 0.83314 0.83652 0.86452 0.86762 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 8.80 71.98 0.63 -3.05 16 2 C 0.16 4.35 1.37 -11.54 -0.02 4.33 16 3 C -0.13 -3.17 8.83 71.98 0.64 -2.53 16 4 O -0.57 -16.60 11.96 -148.98 -1.78 -18.38 16 5 C -0.16 -5.70 8.33 24.52 0.20 -5.49 16 6 C -0.10 -4.02 8.66 23.47 0.20 -3.81 16 7 C 0.09 4.52 6.89 43.77 0.30 4.82 16 8 N -0.47 -23.50 9.20 -169.55 -1.56 -25.06 16 9 C -0.01 -0.31 6.75 41.57 0.28 -0.03 16 10 C -0.08 -3.04 9.98 22.36 0.22 -2.82 16 11 C -0.16 -5.58 9.90 22.03 0.22 -5.36 16 12 C -0.10 -3.59 9.91 22.00 0.22 -3.38 16 13 C -0.15 -6.55 9.80 22.40 0.22 -6.33 16 14 C -0.07 -3.47 5.87 -20.08 -0.12 -3.59 16 15 C -0.21 -11.42 8.54 23.22 0.20 -11.23 16 16 C 0.05 2.43 5.72 -19.89 -0.11 2.31 16 17 C -0.45 -22.47 8.45 23.34 0.20 -22.27 16 18 H 0.10 4.54 6.57 -2.91 -0.02 4.52 16 19 C 0.03 1.59 5.17 85.31 0.44 2.03 16 20 N -0.80 -39.89 10.97 21.86 0.24 -39.65 16 21 Si 0.99 35.25 29.59 68.60 2.03 37.28 16 22 H -0.26 -8.65 7.11 99.48 0.71 -7.95 16 23 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 24 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.39 9.65 8.06 -74.05 -0.60 9.06 16 32 H 0.11 4.24 7.36 -2.91 -0.02 4.21 16 33 H 0.13 5.21 4.96 -2.91 -0.01 5.20 16 34 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 35 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 36 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.11 6.35 6.27 -2.91 -0.02 6.33 16 39 H 0.30 13.12 8.29 -92.71 -0.77 12.36 16 Total: -1.00 -62.75 328.60 3.12 -59.63 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: 0.47 Total: 42.58 kcal Atomic # 6 Polarization: -60.13 SS G_CDS: 3.73 Total: -56.40 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -1.32 Total: -64.71 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.78 Total: -18.38 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Total: -62.75 3.12 -59.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239148880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.806 kcal (2) G-P(sol) polarization free energy of solvation -62.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds