Wall clock time and date at job start Tue Mar 31 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35600 * 116.99594 * 2 1 4 4 C 1.38517 * 120.08665 * 359.97438 * 3 2 1 5 5 C 1.38031 * 120.30654 * 180.27156 * 4 3 2 6 6 C 1.39932 * 120.47536 * 359.49720 * 5 4 3 7 7 C 1.48371 * 119.92198 * 180.27493 * 6 5 4 8 8 C 1.39776 * 120.53728 * 129.95351 * 7 6 5 9 9 C 1.38406 * 118.31154 * 179.73870 * 8 7 6 10 10 C 1.38317 * 119.28339 * 0.55107 * 9 8 7 11 11 C 1.50704 * 119.48563 * 179.67934 * 10 9 8 12 12 N 1.31889 * 121.03305 * 359.71004 * 10 9 8 13 13 C 1.31747 * 121.85170 * 359.97438 * 12 10 9 14 14 C 1.50702 * 119.70126 * 180.02562 * 13 12 10 15 15 C 1.38623 * 120.15537 * 0.50499 * 6 5 4 16 16 C 1.40524 * 119.69185 * 359.75113 * 15 6 5 17 17 C 1.41170 * 120.23213 * 179.97438 * 16 15 6 18 18 H 1.08005 * 120.00566 * 154.47151 * 17 16 15 19 19 C 1.39912 * 119.99820 * 334.46925 * 17 16 15 20 20 N 1.30874 * 120.00229 * 343.17436 * 19 17 16 21 21 Si 1.86800 * 120.00062 * 163.17413 * 19 17 16 22 22 H 1.48503 * 109.47106 * 59.99934 * 21 19 17 23 23 H 1.48503 * 109.47519 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47464 * 300.00146 * 21 19 17 25 25 H 1.08992 * 109.46900 * 299.99672 * 1 2 3 26 26 H 1.09002 * 109.47165 * 60.00002 * 1 2 3 27 27 H 1.09003 * 109.46722 * 179.97438 * 1 2 3 28 28 H 1.07991 * 119.84445 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.75969 * 179.72644 * 5 4 3 30 30 H 1.08003 * 120.84048 * 359.97438 * 8 7 6 31 31 H 1.07999 * 120.35817 * 180.24027 * 9 8 7 32 32 H 1.08998 * 109.47476 * 270.02686 * 11 10 9 33 33 H 1.08996 * 109.46817 * 30.02976 * 11 10 9 34 34 H 1.08994 * 109.46963 * 150.02589 * 11 10 9 35 35 H 1.09001 * 109.46464 * 270.01786 * 14 13 12 36 36 H 1.08992 * 109.47471 * 30.01734 * 14 13 12 37 37 H 1.09003 * 109.47088 * 150.02188 * 14 13 12 38 38 H 1.08000 * 120.15457 * 179.72342 * 15 6 5 39 39 H 0.96995 * 120.00268 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2918 2.3710 -0.0005 5 6 1.9137 3.6033 -0.0062 6 6 3.3100 3.6937 -0.0009 7 6 3.9656 5.0247 -0.0009 8 6 4.9693 5.3220 0.9254 9 6 5.5534 6.5760 0.8805 10 6 5.1212 7.4903 -0.0632 11 6 5.7490 8.8595 -0.1114 12 7 4.1679 7.1827 -0.9211 13 6 3.5870 6.0002 -0.9206 14 6 2.5028 5.7004 -1.9235 15 6 4.0823 2.5425 -0.0004 16 6 3.4564 1.2844 0.0000 17 6 4.2318 0.1047 0.0000 18 1 3.8233 -0.8102 0.4033 19 6 5.5295 0.1206 -0.5227 20 7 5.9111 1.1042 -1.2971 21 14 6.7175 -1.2622 -0.1153 22 1 6.1559 -2.5529 -0.5886 23 1 8.0176 -1.0122 -0.7880 24 1 6.9233 -1.3212 1.3542 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2135 2.3131 -0.0005 29 1 1.3181 4.5043 -0.0110 30 1 5.2837 4.5905 1.6551 31 1 6.3347 6.8395 1.5780 32 1 5.1939 9.5368 0.5375 33 1 6.7830 8.7972 0.2278 34 1 5.7242 9.2346 -1.1345 35 1 1.5347 5.9759 -1.5050 36 1 2.6814 6.2728 -2.8337 37 1 2.5080 4.6357 -2.1569 38 1 5.1601 2.6122 -0.0008 39 1 6.8107 1.1151 -1.6597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239457940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:47 Heat of formation + Delta-G solvation = 2.502517 kcal Electronic energy + Delta-G solvation = -21584.507828 eV Core-core repulsion = 18456.539393 eV Total energy + Delta-G solvation = -3127.968435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96009 -38.61933 -36.31310 -34.09172 -32.99128 -32.37092 -30.02429 -29.14013 -28.34201 -26.72204 -25.62671 -25.01887 -22.14167 -21.53782 -20.94692 -19.85111 -17.50290 -16.60222 -16.03863 -15.57881 -15.21529 -14.76288 -14.65853 -14.58456 -14.24561 -13.49361 -13.06151 -12.96210 -12.80046 -12.73601 -12.48375 -12.02957 -11.97909 -11.74808 -11.58247 -11.50883 -11.35585 -11.20601 -10.97703 -10.78789 -10.51248 -10.05912 -9.96539 -9.58795 -9.27381 -9.16601 -8.97103 -8.24412 -7.55713 -6.91864 -6.69163 -4.29106 1.45896 1.73919 2.71972 2.86192 3.07665 3.10613 3.17772 3.94483 4.18675 4.44760 4.56768 4.59791 5.08603 5.29520 5.39015 5.45640 5.55288 5.69174 5.71794 5.75284 5.78959 5.85249 5.92776 5.97753 6.06626 6.11125 6.12829 6.26621 6.29806 6.52522 6.62636 6.76964 6.79598 7.05592 7.15599 7.24167 7.30215 7.60403 7.64647 7.90868 8.11577 8.32031 8.46180 8.63799 8.79923 8.99788 10.18895 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.005864 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.531381 B = 4774.052262 C = 6282.696202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.021 3.979 4 C -0.180 4.180 5 C -0.187 4.187 6 C -0.069 4.069 7 C -0.057 4.057 8 C -0.068 4.068 9 C -0.178 4.178 10 C 0.104 3.896 11 C -0.096 4.096 12 N -0.488 5.488 13 C 0.132 3.868 14 C -0.098 4.098 15 C -0.121 4.121 16 C 0.095 3.905 17 C -0.446 4.446 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.797 5.797 21 Si 0.909 3.091 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.264 1.264 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 6.831 2.299 7.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.024 4.024 4 C -0.199 4.199 5 C -0.207 4.207 6 C -0.070 4.070 7 C -0.059 4.059 8 C -0.094 4.094 9 C -0.198 4.198 10 C -0.034 4.034 11 C -0.154 4.154 12 N -0.199 5.199 13 C -0.006 4.006 14 C -0.156 4.156 15 C -0.141 4.141 16 C 0.093 3.907 17 C -0.475 4.475 18 H 0.101 0.899 19 C -0.144 4.144 20 N -0.422 5.422 21 Si 0.733 3.267 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.151 0.849 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.145 0.855 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.915 7.341 1.536 7.740 hybrid contribution 0.602 -1.082 0.758 1.451 sum -1.313 6.259 2.294 6.794 Atomic orbital electron populations 1.22748 0.81654 1.01802 0.99979 1.85963 1.18290 1.28278 1.90015 1.19343 0.92368 0.82648 1.08001 1.20536 0.97481 0.92661 1.09196 1.20127 0.92691 0.95414 1.12422 1.18222 0.92811 0.90186 1.05827 1.19861 0.95948 0.94993 0.95100 1.21700 0.94272 0.95971 0.97456 1.21761 1.02374 0.94749 1.00931 1.21079 0.93731 0.96400 0.92192 1.20608 0.99539 0.92092 1.03117 1.67208 1.08950 1.19907 1.23801 1.21312 0.95986 0.88243 0.95028 1.20761 0.95071 1.03376 0.96359 1.21163 0.99336 0.89441 1.04175 1.16951 0.87308 0.93838 0.92647 1.19371 0.96999 0.96681 1.34492 0.89936 1.25884 0.98783 0.96949 0.92755 1.69814 1.19425 1.30744 1.22267 0.86351 0.78940 0.81538 0.79836 1.18971 1.20418 1.18858 0.94184 0.94063 0.90005 0.88327 0.88795 0.84922 0.85530 0.91112 0.91232 0.90978 0.91047 0.91616 0.89472 0.85491 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.03 9.77 -18.50 -0.18 -7.21 16 3 C 0.02 0.50 6.72 -38.28 -0.26 0.25 16 4 C -0.18 -3.87 9.01 -39.55 -0.36 -4.23 16 5 C -0.19 -3.97 7.91 -39.02 -0.31 -4.27 16 6 C -0.07 -1.55 4.74 -104.95 -0.50 -2.05 16 7 C -0.06 -1.16 5.47 -104.75 -0.57 -1.73 16 8 C -0.07 -1.25 9.67 -38.94 -0.38 -1.63 16 9 C -0.18 -2.82 9.72 -39.49 -0.38 -3.21 16 10 C 0.10 1.68 6.78 -82.54 -0.56 1.12 16 11 C -0.10 -1.13 10.16 36.01 0.37 -0.77 16 12 N -0.49 -9.00 10.17 -5.47 -0.06 -9.05 16 13 C 0.13 2.55 6.78 -82.23 -0.56 1.99 16 14 C -0.10 -1.69 8.61 36.01 0.31 -1.38 16 15 C -0.12 -3.03 8.15 -38.58 -0.31 -3.35 16 16 C 0.10 2.49 5.57 -106.73 -0.59 1.90 16 17 C -0.45 -11.79 8.71 -37.84 -0.33 -12.12 16 18 H 0.08 2.17 7.65 -52.48 -0.40 1.77 16 19 C 0.07 1.83 5.15 -17.33 -0.09 1.74 16 20 N -0.80 -20.39 10.96 55.55 0.61 -19.78 16 21 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 25 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 26 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.10 1.84 6.27 -52.49 -0.33 1.51 16 29 H 0.09 1.80 6.81 -52.49 -0.36 1.44 16 30 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 31 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.67 8.07 -51.93 -0.42 0.26 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.10 7.48 -51.93 -0.39 0.72 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.63 6.44 -51.93 -0.33 1.30 16 38 H 0.13 3.30 6.18 -52.49 -0.32 2.97 16 39 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 325.99 15.07 4.91 4.91 Total: -1.00 -28.76 325.99 -8.30 -37.06 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.02 Total: 6.57 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -3.53 Total: -26.19 kcal Atomic # 7 Polarization: -29.39 SS G_CDS: 0.55 Total: -28.83 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.18 Total: -7.21 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.76 -8.30 -37.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239457940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.558 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds