Wall clock time and date at job start Tue Mar 31 2020 05:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35866 * 116.99919 * 2 1 4 4 C 1.39462 * 119.78465 * 359.97438 * 3 2 1 5 5 C 1.37949 * 120.62019 * 180.02562 * 4 3 2 6 6 C 1.39165 * 120.16688 * 359.97438 * 5 4 3 7 7 C 1.47845 * 120.22187 * 179.97438 * 6 5 4 8 8 C 1.40085 * 120.56598 * 64.99731 * 7 6 5 9 9 C 1.38312 * 118.28333 * 179.72561 * 8 7 6 10 10 C 1.38387 * 119.32112 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.45549 * 179.97438 * 10 9 8 12 12 N 1.31933 * 121.09633 * 359.97438 * 10 9 8 13 13 C 1.31691 * 121.87849 * 0.04144 * 12 10 9 14 14 C 1.50698 * 119.71889 * 179.97438 * 13 12 10 15 15 C 1.41900 * 119.56003 * 0.25864 * 6 5 4 16 16 C 1.40892 * 120.29846 * 179.70466 * 15 6 5 17 17 H 1.08001 * 119.99885 * 24.70979 * 16 15 6 18 18 C 1.40050 * 119.99772 * 204.71607 * 16 15 6 19 19 N 1.30780 * 119.99851 * 17.49108 * 18 16 15 20 20 Si 1.86796 * 119.99966 * 197.49172 * 18 16 15 21 21 H 1.48496 * 109.47336 * 60.00007 * 20 18 16 22 22 H 1.48507 * 109.47118 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47303 * 299.99745 * 20 18 16 24 24 C 1.37933 * 119.77987 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47353 * 299.99904 * 1 2 3 26 26 H 1.09006 * 109.47060 * 60.00041 * 1 2 3 27 27 H 1.09001 * 109.47546 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.69115 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.91850 * 179.97438 * 5 4 3 30 30 H 1.08001 * 120.85546 * 359.75397 * 8 7 6 31 31 H 1.08003 * 120.34120 * 180.02562 * 9 8 7 32 32 H 1.08995 * 109.47614 * 90.00202 * 11 10 9 33 33 H 1.08999 * 109.47435 * 210.00705 * 11 10 9 34 34 H 1.09002 * 109.47171 * 330.00180 * 11 10 9 35 35 H 1.09003 * 109.47356 * 269.97430 * 14 13 12 36 36 H 1.08996 * 109.47610 * 29.97976 * 14 13 12 37 37 H 1.09001 * 109.47089 * 149.97828 * 14 13 12 38 38 H 0.97001 * 120.00074 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.09067 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2818 2.3773 -0.0005 5 6 1.8901 3.6155 -0.0011 6 6 3.2784 3.7126 -0.0006 7 6 3.9315 5.0390 -0.0017 8 6 3.7884 5.9045 1.0904 9 6 4.4246 7.1316 1.0419 10 6 5.1745 7.4626 -0.0730 11 6 5.8685 8.7990 -0.1293 12 7 5.2920 6.6275 -1.0876 13 6 4.7057 5.4483 -1.0893 14 6 4.8722 4.5328 -2.2747 15 6 4.0629 2.5302 -0.0050 16 6 5.4695 2.6105 -0.0108 17 1 5.9618 3.4892 0.3790 18 6 6.2292 1.5509 -0.5222 19 7 5.6675 0.6557 -1.2926 20 14 8.0447 1.4162 -0.1039 21 1 8.2062 1.2960 1.3673 22 1 8.6170 0.2153 -0.7639 23 1 8.7543 2.6299 -0.5822 24 6 3.4235 1.2775 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2039 2.3109 -0.0005 29 1 1.2874 4.5117 -0.0019 30 1 3.1969 5.6206 1.9483 31 1 4.3371 7.8245 1.8658 32 1 6.8686 8.7073 0.2943 33 1 5.9418 9.1271 -1.1662 34 1 5.2971 9.5296 0.4433 35 1 4.0796 4.7264 -2.9975 36 1 5.8409 4.7140 -2.7405 37 1 4.8166 3.4958 -1.9436 38 1 6.1935 -0.0784 -1.6465 39 1 4.0097 0.3705 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239459909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:50 Heat of formation + Delta-G solvation = 1.610498 kcal Electronic energy + Delta-G solvation = -21952.810924 eV Core-core repulsion = 18824.803808 eV Total energy + Delta-G solvation = -3128.007116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.73282 -38.66595 -36.55591 -33.75675 -33.03722 -32.10154 -29.87810 -29.32279 -27.96552 -26.99276 -25.52786 -24.81200 -22.02945 -21.30204 -20.95887 -19.76083 -17.78410 -16.20946 -15.81728 -15.69063 -15.18590 -14.85631 -14.75651 -14.55100 -14.06425 -13.36818 -13.02261 -12.94386 -12.65857 -12.57172 -12.29460 -11.96604 -11.84822 -11.58105 -11.46290 -11.29798 -11.25216 -11.14757 -11.04276 -10.85580 -10.50239 -10.02860 -9.94734 -9.65692 -9.20948 -9.00402 -8.75182 -7.89153 -7.56701 -7.01220 -6.72275 -4.52046 1.75888 1.98173 2.69841 2.89234 3.02431 3.05856 3.16449 3.85392 4.26199 4.41688 4.50398 4.85296 5.26113 5.42898 5.54811 5.61839 5.67395 5.71195 5.74136 5.83740 5.87296 5.93937 6.00299 6.10784 6.28494 6.35299 6.42956 6.52384 6.61263 6.74681 6.83016 6.92032 7.04365 7.17399 7.21702 7.32742 7.52703 7.60944 7.72109 7.89328 7.94678 8.27436 8.64752 8.72148 8.74245 8.82234 10.01446 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.007384 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.376798 B = 3791.104043 C = 5475.962780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.135 3.865 4 C -0.317 4.317 5 C -0.039 4.039 6 C -0.203 4.203 7 C -0.029 4.029 8 C -0.083 4.083 9 C -0.185 4.185 10 C 0.097 3.903 11 C -0.095 4.095 12 N -0.493 5.493 13 C 0.152 3.848 14 C -0.111 4.111 15 C 0.156 3.844 16 C -0.442 4.442 17 H 0.080 0.920 18 C 0.079 3.921 19 N -0.774 5.774 20 Si 0.903 3.097 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.195 4.195 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.118 0.882 38 H 0.286 0.714 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 5.240 2.024 6.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.091 3.909 4 C -0.337 4.337 5 C -0.058 4.058 6 C -0.206 4.206 7 C -0.031 4.031 8 C -0.109 4.109 9 C -0.205 4.205 10 C -0.040 4.040 11 C -0.152 4.152 12 N -0.203 5.203 13 C 0.013 3.987 14 C -0.168 4.168 15 C 0.153 3.847 16 C -0.470 4.470 17 H 0.098 0.902 18 C -0.142 4.142 19 N -0.397 5.397 20 Si 0.727 3.273 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.215 4.215 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.098 5.092 1.148 5.626 hybrid contribution -0.050 -0.162 0.953 0.968 sum -2.149 4.930 2.101 5.774 Atomic orbital electron populations 1.22761 0.80735 1.01888 1.00530 1.86005 1.19533 1.29092 1.89719 1.18993 0.92455 0.82470 0.97010 1.20334 0.97341 0.92416 1.23611 1.20276 0.93114 0.95247 0.97123 1.18321 0.91994 0.90524 1.19716 1.19553 0.96345 0.94189 0.93018 1.21722 0.98140 0.93214 0.97781 1.21654 1.01352 0.98050 0.99396 1.21035 0.96593 0.95938 0.90466 1.20580 0.99680 0.92106 1.02845 1.67231 1.21340 1.03929 1.27803 1.21518 0.91494 0.90281 0.95360 1.20995 1.00691 1.01410 0.93724 1.17138 0.92565 0.88762 0.86282 1.19423 0.90925 1.02126 1.34543 0.90152 1.25943 1.01277 0.94330 0.92613 1.69793 1.38746 1.10454 1.20743 0.86418 0.81858 0.78847 0.80195 1.18652 1.20070 1.18686 1.20527 0.89368 0.99053 1.12533 0.93708 0.93628 0.89906 0.88571 0.89085 0.85684 0.86113 0.91278 0.91183 0.91571 0.92315 0.92247 0.86332 0.90319 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.57 16 2 O -0.33 -7.04 10.48 -19.32 -0.20 -7.24 16 3 C 0.13 3.14 6.67 -39.24 -0.26 2.88 16 4 C -0.32 -6.85 9.02 -39.23 -0.35 -7.20 16 5 C -0.04 -0.85 9.72 -39.34 -0.38 -1.23 16 6 C -0.20 -4.68 4.70 -104.22 -0.49 -5.17 16 7 C -0.03 -0.62 4.39 -104.75 -0.46 -1.08 16 8 C -0.08 -1.57 9.90 -38.86 -0.38 -1.95 16 9 C -0.18 -3.10 9.72 -39.50 -0.38 -3.48 16 10 C 0.10 1.71 6.78 -82.50 -0.56 1.15 16 11 C -0.09 -1.25 10.16 36.00 0.37 -0.88 16 12 N -0.49 -10.10 10.17 -5.38 -0.05 -10.15 16 13 C 0.15 3.28 6.21 -82.13 -0.51 2.77 16 14 C -0.11 -2.37 9.43 36.00 0.34 -2.03 16 15 C 0.16 3.87 4.54 -106.58 -0.48 3.39 16 16 C -0.44 -10.93 6.13 -37.90 -0.23 -11.16 16 17 H 0.08 2.03 7.04 -52.49 -0.37 1.66 16 18 C 0.08 1.87 5.14 -17.32 -0.09 1.78 16 19 N -0.77 -18.78 10.96 55.55 0.61 -18.17 16 20 Si 0.90 18.25 29.59 -169.99 -5.03 13.22 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.19 -4.93 8.61 -38.78 -0.33 -5.26 16 25 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 26 H 0.05 0.68 7.65 -51.93 -0.40 0.28 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.10 1.83 6.25 -52.49 -0.33 1.50 16 29 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.12 2.82 4.30 -51.93 -0.22 2.60 16 38 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 39 H 0.13 3.40 6.17 -52.49 -0.32 3.08 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -27.26 323.76 -8.00 -35.26 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -4.97 Total: 8.11 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -3.23 Total: -25.91 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: 0.55 Total: -28.33 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.20 Total: -7.24 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.26 -8.00 -35.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239459909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.870 kcal (2) G-P(sol) polarization free energy of solvation -27.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds