Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38315 * 119.48303 * 2 1 4 4 C 1.38413 * 119.28509 * 180.02562 * 3 2 1 5 5 C 1.39786 * 118.30673 * 0.02562 * 4 3 2 6 6 C 1.48359 * 120.53421 * 180.02562 * 5 4 3 7 7 C 1.39377 * 120.06457 * 130.27272 * 6 5 4 8 8 C 1.37908 * 119.93738 * 180.23541 * 7 6 5 9 9 C 1.38838 * 120.06260 * 359.51450 * 8 7 6 10 10 O 1.35872 * 119.93469 * 180.26008 * 9 8 7 11 11 C 1.42901 * 116.99948 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47167 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99917 * 0.02562 * 12 11 10 14 14 C 1.37868 * 119.99981 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99867 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00206 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47273 * 90.00037 * 16 14 12 18 18 H 1.48500 * 109.47541 * 209.99942 * 16 14 12 19 19 H 1.48503 * 109.47340 * 330.00249 * 16 14 12 20 20 C 1.38830 * 120.12960 * 0.23684 * 9 8 7 21 21 C 1.37906 * 120.06619 * 359.97438 * 20 9 8 22 22 C 1.39309 * 118.92358 * 0.27537 * 5 4 3 23 23 C 1.50702 * 119.69870 * 179.72395 * 22 5 4 24 24 N 1.31740 * 120.59497 * 359.45250 * 22 5 4 25 25 H 1.08999 * 109.46901 * 89.99235 * 1 2 3 26 26 H 1.09001 * 109.47126 * 209.99886 * 1 2 3 27 27 H 1.08996 * 109.46689 * 329.99769 * 1 2 3 28 28 H 1.08001 * 120.35953 * 359.97438 * 3 2 1 29 29 H 1.07991 * 120.84618 * 180.02562 * 4 3 2 30 30 H 1.08004 * 120.03370 * 0.02562 * 7 6 5 31 31 H 1.08002 * 119.97251 * 179.79787 * 8 7 6 32 32 H 1.08995 * 109.47054 * 299.99422 * 11 10 9 33 33 H 1.09006 * 109.47041 * 59.99614 * 11 10 9 34 34 H 0.96996 * 119.99791 * 180.02562 * 15 14 12 35 35 H 1.07997 * 119.96749 * 180.02562 * 20 9 8 36 36 H 1.07997 * 120.03450 * 180.02562 * 21 20 9 37 37 H 1.09002 * 109.47151 * 90.00074 * 23 22 5 38 38 H 1.09003 * 109.46850 * 209.99767 * 23 22 5 39 39 H 1.08997 * 109.47382 * 330.00109 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.2040 0.0000 4 6 3.5719 1.1992 -0.0005 5 6 4.2305 -0.0337 -0.0016 6 6 5.7128 -0.0965 -0.0017 7 6 6.3774 -0.9059 0.9180 8 6 7.7554 -0.9586 0.9188 9 6 8.4804 -0.2141 -0.0019 10 8 9.8379 -0.2720 -0.0022 11 6 10.5208 0.5200 -0.9762 12 6 12.0081 0.3297 -0.8251 13 1 12.3933 -0.3303 -0.0620 14 6 12.8770 0.9974 -1.6618 15 7 14.1750 0.8309 -1.5303 16 14 12.2107 2.1373 -2.9831 17 1 12.0790 3.5101 -2.4323 18 1 13.1437 2.1550 -4.1383 19 1 10.8796 1.6533 -3.4293 20 6 7.8210 0.5891 -0.9225 21 6 6.4433 0.6491 -0.9253 22 6 3.4724 -1.2025 -0.0080 23 6 4.1644 -2.5412 -0.0155 24 7 2.1562 -1.1480 -0.0020 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6452 2.1379 -0.0004 29 1 4.1288 2.1245 -0.0001 30 1 5.8138 -1.4888 1.6315 31 1 8.2711 -1.5831 1.6333 32 1 10.2143 0.2109 -1.9754 33 1 10.2724 1.5711 -0.8287 34 1 14.7863 1.3010 -2.1187 35 1 8.3876 1.1668 -1.6378 36 1 5.9309 1.2737 -1.6419 37 1 4.3315 -2.8697 1.0103 38 1 3.5405 -3.2698 -0.5333 39 1 5.1218 -2.4525 -0.5290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239466609.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = 7.615862 kcal Electronic energy + Delta-G solvation = -20666.496465 eV Core-core repulsion = 17538.749761 eV Total energy + Delta-G solvation = -3127.746703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67235 -39.42338 -37.08705 -33.97546 -33.14463 -32.78981 -30.90952 -30.08633 -28.83405 -28.30778 -26.20368 -23.35436 -22.96021 -22.14144 -21.44224 -20.70688 -17.92699 -16.80496 -16.66307 -16.43443 -15.44250 -15.39467 -14.95121 -14.87006 -14.44409 -14.14950 -13.86089 -13.49357 -13.36397 -13.14407 -12.91417 -12.59006 -12.49591 -12.39143 -12.22027 -12.08509 -11.96596 -11.45879 -11.17185 -11.09738 -10.71327 -10.39293 -10.03327 -9.85173 -9.58602 -9.40918 -8.90495 -8.83921 -8.76019 -7.55984 -6.28683 -4.31124 0.76001 1.12354 1.55588 1.78430 3.13140 3.19550 3.21035 3.56450 3.98590 4.03006 4.07492 4.19717 4.55069 4.60639 4.69567 4.89873 5.01695 5.04258 5.12582 5.25629 5.28414 5.32015 5.44878 5.49476 5.54164 5.55172 5.69070 5.73610 5.85226 5.98688 6.01010 6.12209 6.20650 6.25925 6.41796 6.64371 6.65419 6.67216 6.69333 7.00125 7.32509 7.88585 7.92198 8.44601 8.80537 9.26862 10.83605 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034551 B = 0.003167 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.208347 B = 8839.284986 C = 9367.828315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.119 3.881 3 C -0.177 4.177 4 C -0.065 4.065 5 C -0.081 4.081 6 C -0.112 4.112 7 C -0.062 4.062 8 C -0.164 4.164 9 C 0.159 3.841 10 O -0.300 6.300 11 C 0.167 3.833 12 C -0.530 4.530 13 H 0.087 0.913 14 C 0.078 3.922 15 N -0.887 5.887 16 Si 0.873 3.127 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.216 4.216 21 C -0.060 4.060 22 C 0.140 3.860 23 C -0.107 4.107 24 N -0.484 5.484 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.020 0.980 33 H 0.015 0.985 34 H 0.270 0.730 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.867 -0.250 2.235 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.018 4.018 3 C -0.197 4.197 4 C -0.090 4.090 5 C -0.083 4.083 6 C -0.113 4.113 7 C -0.080 4.080 8 C -0.183 4.183 9 C 0.111 3.889 10 O -0.212 6.212 11 C 0.093 3.907 12 C -0.568 4.568 13 H 0.105 0.895 14 C -0.125 4.125 15 N -0.524 5.524 16 Si 0.699 3.301 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.235 4.235 21 C -0.078 4.078 22 C 0.002 3.998 23 C -0.164 4.164 24 N -0.194 5.194 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.990 -1.077 2.273 25.116 hybrid contribution 0.313 1.774 -0.961 2.041 sum -24.677 0.697 1.312 24.721 Atomic orbital electron populations 1.20687 0.89018 1.03269 1.02914 1.21247 0.96855 0.88311 0.95411 1.21844 0.94687 0.99131 1.04025 1.21693 0.94097 0.97763 0.95460 1.19583 0.93352 0.93471 1.01886 1.18269 0.90272 1.02686 1.00081 1.20909 0.93129 0.96826 0.97138 1.20381 0.93061 1.03537 1.01322 1.19423 0.84671 0.92214 0.92635 1.86172 1.13503 1.65132 1.56368 1.21038 0.93413 0.89664 0.86545 1.20763 0.86723 1.29489 1.19811 0.89517 1.24704 0.94636 0.96224 0.96944 1.69850 1.01597 1.42262 1.38674 0.86891 0.79535 0.81696 0.81952 1.19601 1.20379 1.18953 1.21324 0.95044 1.04393 1.02691 1.20882 0.93041 0.96998 0.96897 1.21365 0.88765 0.95314 0.94377 1.20842 1.00355 0.92071 1.03101 1.67287 1.09331 1.29290 1.13540 0.90582 0.90605 0.90869 0.84948 0.84715 0.85706 0.85038 0.96234 0.96721 0.91991 0.85130 0.86301 0.90336 0.90738 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.16 36.01 0.37 -0.37 16 2 C 0.12 1.28 6.78 -82.54 -0.56 0.72 16 3 C -0.18 -1.73 9.72 -39.49 -0.38 -2.12 16 4 C -0.06 -0.71 9.68 -38.94 -0.38 -1.09 16 5 C -0.08 -1.01 5.48 -104.75 -0.57 -1.59 16 6 C -0.11 -1.51 4.74 -104.88 -0.50 -2.01 16 7 C -0.06 -0.83 7.92 -39.28 -0.31 -1.14 16 8 C -0.16 -2.58 9.97 -39.48 -0.39 -2.97 16 9 C 0.16 2.97 6.69 -39.14 -0.26 2.71 16 10 O -0.30 -6.84 10.12 -19.34 -0.20 -7.04 16 11 C 0.17 4.04 3.56 36.01 0.13 4.17 16 12 C -0.53 -15.12 9.99 -34.44 -0.34 -15.47 16 13 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 14 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 15 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 16 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 20 C -0.22 -3.67 9.02 -39.48 -0.36 -4.02 16 21 C -0.06 -0.86 9.53 -39.28 -0.37 -1.23 16 22 C 0.14 1.74 6.78 -82.23 -0.56 1.19 16 23 C -0.11 -1.12 8.62 36.01 0.31 -0.81 16 24 N -0.48 -6.12 10.17 -5.48 -0.06 -6.18 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.13 1.38 6.85 -52.48 -0.36 1.02 16 31 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.02 0.47 6.71 -51.93 -0.35 0.12 16 33 H 0.02 0.35 7.09 -51.93 -0.37 -0.02 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.13 2.26 6.28 -52.49 -0.33 1.93 16 36 H 0.12 1.45 8.05 -52.49 -0.42 1.03 16 37 H 0.08 0.72 7.50 -51.93 -0.39 0.33 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.91 6.45 -51.93 -0.34 0.58 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -31.09 328.55 -8.58 -39.66 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.10 Total: 0.46 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -4.28 Total: -21.92 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.72 Total: -31.80 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.20 Total: -7.04 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.09 -8.58 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239466609.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.278 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds