Wall clock time and date at job start Tue Mar 31 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35526 * 117.00124 * 2 1 4 4 C 1.39115 * 120.48531 * 0.02562 * 3 2 1 5 5 C 1.38322 * 118.63500 * 179.97438 * 4 3 2 6 6 C 1.40076 * 119.57572 * 0.02562 * 5 4 3 7 7 C 1.48258 * 119.51734 * 179.97438 * 6 5 4 8 8 C 1.39419 * 120.12624 * 359.72657 * 7 6 5 9 9 C 1.38000 * 119.86314 * 179.72103 * 8 7 6 10 10 C 1.50707 * 119.93125 * 180.29469 * 9 8 7 11 11 C 1.38338 * 120.13128 * 0.55040 * 9 8 7 12 12 C 1.38342 * 120.25841 * 359.72619 * 11 9 8 13 13 C 1.50700 * 119.93689 * 180.02562 * 12 11 9 14 14 C 1.37996 * 120.13005 * 359.97438 * 12 11 9 15 15 N 1.32168 * 120.96246 * 359.97438 * 6 5 4 16 16 C 1.33572 * 121.46638 * 359.72746 * 15 6 5 17 17 C 1.41002 * 119.84143 * 180.28710 * 16 15 6 18 18 H 1.08001 * 120.00428 * 180.24963 * 17 16 15 19 19 C 1.40026 * 119.99560 * 0.24780 * 17 16 15 20 20 N 1.30777 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00150 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46905 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47385 * 119.99582 * 21 19 17 24 24 H 1.48502 * 109.47372 * 239.99987 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99791 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99913 * 1 2 3 28 28 H 1.07993 * 120.68175 * 0.02562 * 4 3 2 29 29 H 1.08009 * 120.21237 * 180.02562 * 5 4 3 30 30 H 1.07990 * 120.07135 * 359.97106 * 8 7 6 31 31 H 1.09000 * 109.47196 * 270.25430 * 10 9 8 32 32 H 1.08996 * 109.46993 * 30.26146 * 10 9 8 33 33 H 1.09002 * 109.46490 * 150.25382 * 10 9 8 34 34 H 1.07999 * 119.87223 * 179.74173 * 11 9 8 35 35 H 1.08999 * 109.47108 * 269.97940 * 13 12 11 36 36 H 1.09006 * 109.47124 * 29.97236 * 13 12 11 37 37 H 1.09001 * 109.47176 * 149.97112 * 13 12 11 38 38 H 1.07991 * 120.06577 * 179.97438 * 14 12 11 39 39 H 0.96998 * 120.00184 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.2966 2.3806 0.0005 5 6 1.9641 3.5922 0.0011 6 6 3.3647 3.6099 0.0005 7 6 4.0788 4.9091 0.0005 8 6 3.3591 6.1032 -0.0047 9 6 4.0292 7.3095 0.0011 10 6 3.2527 8.6011 0.0022 11 6 5.4124 7.3355 0.0006 12 6 6.1318 6.1539 0.0000 13 6 7.6384 6.1906 0.0000 14 6 5.4726 4.9415 0.0004 15 7 4.0589 2.4852 0.0000 16 6 3.4557 1.2935 0.0054 17 6 4.2301 0.1151 0.0108 18 1 3.7451 -0.8499 0.0111 19 6 5.6280 0.1962 0.0157 20 7 6.2153 1.3646 0.0147 21 14 6.6541 -1.3648 0.0220 22 1 5.7560 -2.5475 0.0215 23 1 7.5153 -1.3961 -1.1874 24 1 7.5066 -1.3918 1.2377 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2172 2.3461 0.0014 29 1 1.4088 4.5186 0.0019 30 1 2.2793 6.0842 -0.0092 31 1 3.0652 8.9132 -1.0252 32 1 2.3030 8.4537 0.5164 33 1 3.8286 9.3707 0.5164 34 1 5.9326 8.2819 0.0010 35 1 8.0016 6.1997 -1.0276 36 1 7.9799 7.0892 0.5140 37 1 8.0233 5.3098 0.5138 38 1 6.0353 4.0198 -0.0005 39 1 7.1837 1.4208 0.0178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239522604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:10 Heat of formation + Delta-G solvation = 7.745011 kcal Electronic energy + Delta-G solvation = -21493.967238 eV Core-core repulsion = 18366.226135 eV Total energy + Delta-G solvation = -3127.741103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.27868 -38.53513 -36.62716 -33.81171 -33.07588 -31.93305 -30.45276 -28.95240 -27.00621 -26.56518 -26.25425 -25.28511 -22.46061 -21.59965 -19.92863 -19.66184 -17.47638 -16.73795 -15.92664 -15.61163 -15.03468 -14.77956 -14.51949 -14.40637 -13.68497 -13.35984 -13.03330 -12.91625 -12.87874 -12.53456 -12.39755 -12.33493 -12.18726 -11.59159 -11.50251 -11.33181 -11.26361 -11.10065 -10.71809 -10.52824 -10.42885 -10.34800 -10.33873 -9.79845 -9.46015 -8.36897 -8.13385 -7.96602 -7.76664 -6.87610 -6.46167 -4.41986 1.63378 2.00065 2.75645 2.98965 3.10835 3.16277 3.19062 3.95989 4.33775 4.38714 4.83382 5.18256 5.22052 5.35675 5.62642 5.65556 5.68380 5.69648 5.78496 5.82284 5.87465 5.88248 5.96995 5.99232 5.99867 6.07948 6.18919 6.25209 6.32257 6.57971 6.67010 6.70615 6.86127 7.04560 7.14557 7.22830 7.30358 7.44082 7.57878 7.69351 7.88798 8.17713 8.29048 8.68632 8.97387 9.98311 10.28047 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.006242 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.392075 B = 4484.376687 C = 6497.004596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C -0.027 4.027 4 C -0.148 4.148 5 C -0.269 4.269 6 C 0.149 3.851 7 C -0.007 4.007 8 C -0.119 4.119 9 C -0.101 4.101 10 C -0.106 4.106 11 C -0.132 4.132 12 C -0.099 4.099 13 C -0.108 4.108 14 C -0.086 4.086 15 N -0.449 5.449 16 C 0.253 3.747 17 C -0.412 4.412 18 H 0.091 0.909 19 C 0.068 3.932 20 N -0.717 5.717 21 Si 0.909 3.091 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.273 1.273 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.154 0.846 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 7.147 -0.031 7.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.075 4.075 4 C -0.172 4.172 5 C -0.293 4.293 6 C 0.008 3.992 7 C -0.008 4.008 8 C -0.138 4.138 9 C -0.101 4.101 10 C -0.163 4.163 11 C -0.150 4.150 12 C -0.099 4.099 13 C -0.164 4.164 14 C -0.104 4.104 15 N -0.164 5.164 16 C 0.125 3.875 17 C -0.444 4.444 18 H 0.109 0.891 19 C -0.157 4.157 20 N -0.339 5.339 21 Si 0.733 3.267 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.199 1.199 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.171 0.829 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.668 7.045 -0.032 7.077 hybrid contribution -0.947 -0.441 -0.012 1.044 sum -1.615 6.605 -0.043 6.799 Atomic orbital electron populations 1.22764 0.81666 1.01913 0.99959 1.85940 1.18355 1.27857 1.90005 1.20367 0.93710 0.83219 1.10230 1.20868 0.97761 0.92616 1.05996 1.21004 0.94246 0.96223 1.17810 1.19681 0.89428 0.92129 0.97986 1.18766 0.93053 0.91365 0.97637 1.21075 0.99502 0.91224 1.02007 1.19633 0.93764 0.94681 1.01980 1.20699 0.99462 0.94496 1.01659 1.20769 0.93246 0.97143 1.03881 1.19864 0.95725 0.93221 1.01112 1.20716 0.91801 1.02155 1.01773 1.21636 0.94106 0.98281 0.96397 1.68863 1.34773 0.95277 1.17500 1.18143 0.84988 0.92093 0.92297 1.19562 0.90603 0.93008 1.41211 0.89065 1.26047 0.98682 0.97282 0.93670 1.70097 1.10317 1.24542 1.28933 0.86239 0.79777 0.82177 0.78483 1.18328 1.19859 1.19864 0.89835 0.94165 0.94155 0.87802 0.88228 0.86302 0.91820 0.91983 0.92151 0.87166 0.91761 0.92392 0.91426 0.82868 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.83 101.05 0.99 1.55 16 2 O -0.31 -7.04 9.61 -18.27 -0.18 -7.22 16 3 C -0.03 -0.67 6.74 -38.05 -0.26 -0.92 16 4 C -0.15 -3.36 9.11 -39.23 -0.36 -3.72 16 5 C -0.27 -6.16 9.46 -38.86 -0.37 -6.53 16 6 C 0.15 3.69 6.74 -82.91 -0.56 3.13 16 7 C -0.01 -0.16 5.88 -104.90 -0.62 -0.78 16 8 C -0.12 -2.22 9.07 -39.23 -0.36 -2.57 16 9 C -0.10 -1.62 5.88 -104.67 -0.61 -2.24 16 10 C -0.11 -1.29 10.01 36.01 0.36 -0.93 16 11 C -0.13 -2.11 9.35 -39.51 -0.37 -2.48 16 12 C -0.10 -1.74 5.87 -104.67 -0.61 -2.36 16 13 C -0.11 -1.53 10.01 36.01 0.36 -1.17 16 14 C -0.09 -1.81 9.22 -39.23 -0.36 -2.18 16 15 N -0.45 -12.25 6.90 -7.56 -0.05 -12.30 16 16 C 0.25 6.97 6.56 -84.86 -0.56 6.41 16 17 C -0.41 -11.11 8.94 -37.87 -0.34 -11.44 16 18 H 0.09 2.40 7.31 -52.49 -0.38 2.01 16 19 C 0.07 1.71 5.50 -17.33 -0.10 1.61 16 20 N -0.72 -18.37 11.08 55.55 0.62 -17.75 16 21 Si 0.91 18.60 29.56 -169.99 -5.02 13.57 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.04 0.62 7.69 -51.93 -0.40 0.23 16 27 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 28 H 0.10 2.01 6.43 -52.49 -0.34 1.67 16 29 H 0.10 1.99 6.16 -52.48 -0.32 1.67 16 30 H 0.12 2.04 6.16 -52.49 -0.32 1.72 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.15 3.58 7.15 -52.49 -0.38 3.20 16 39 H 0.27 6.28 8.29 -40.82 -0.34 5.94 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -29.51 328.32 -8.49 -37.99 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.05 Total: 5.39 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -3.75 Total: -24.62 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.56 Total: -30.06 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.18 Total: -7.22 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.51 -8.49 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239522604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.738 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds