Wall clock time and date at job start Tue Mar 31 2020 05:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35526 * 117.00124 * 2 1 4 4 C 1.39115 * 120.48531 * 0.02562 * 3 2 1 5 5 C 1.38322 * 118.63500 * 179.97438 * 4 3 2 6 6 C 1.40076 * 119.57572 * 0.02562 * 5 4 3 7 7 C 1.48258 * 119.51734 * 179.97438 * 6 5 4 8 8 C 1.39419 * 120.12624 * 359.72657 * 7 6 5 9 9 C 1.38000 * 119.86314 * 179.72103 * 8 7 6 10 10 C 1.50707 * 119.93125 * 180.29469 * 9 8 7 11 11 C 1.38338 * 120.13128 * 0.55040 * 9 8 7 12 12 C 1.38342 * 120.25841 * 359.72619 * 11 9 8 13 13 C 1.50700 * 119.93689 * 180.02562 * 12 11 9 14 14 C 1.37996 * 120.13005 * 359.97438 * 12 11 9 15 15 N 1.32168 * 120.96246 * 359.97438 * 6 5 4 16 16 C 1.33572 * 121.46638 * 359.72746 * 15 6 5 17 17 C 1.41002 * 119.84143 * 180.28710 * 16 15 6 18 18 H 1.08001 * 120.00428 * 180.24963 * 17 16 15 19 19 C 1.40026 * 119.99560 * 0.24780 * 17 16 15 20 20 N 1.30777 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00150 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46905 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47385 * 119.99582 * 21 19 17 24 24 H 1.48502 * 109.47372 * 239.99987 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99791 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99913 * 1 2 3 28 28 H 1.07993 * 120.68175 * 0.02562 * 4 3 2 29 29 H 1.08009 * 120.21237 * 180.02562 * 5 4 3 30 30 H 1.07990 * 120.07135 * 359.97106 * 8 7 6 31 31 H 1.09000 * 109.47196 * 270.25430 * 10 9 8 32 32 H 1.08996 * 109.46993 * 30.26146 * 10 9 8 33 33 H 1.09002 * 109.46490 * 150.25382 * 10 9 8 34 34 H 1.07999 * 119.87223 * 179.74173 * 11 9 8 35 35 H 1.08999 * 109.47108 * 269.97940 * 13 12 11 36 36 H 1.09006 * 109.47124 * 29.97236 * 13 12 11 37 37 H 1.09001 * 109.47176 * 149.97112 * 13 12 11 38 38 H 1.07991 * 120.06577 * 179.97438 * 14 12 11 39 39 H 0.96998 * 120.00184 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.2966 2.3806 0.0005 5 6 1.9641 3.5922 0.0011 6 6 3.3647 3.6099 0.0005 7 6 4.0788 4.9091 0.0005 8 6 3.3591 6.1032 -0.0047 9 6 4.0292 7.3095 0.0011 10 6 3.2527 8.6011 0.0022 11 6 5.4124 7.3355 0.0006 12 6 6.1318 6.1539 0.0000 13 6 7.6384 6.1906 0.0000 14 6 5.4726 4.9415 0.0004 15 7 4.0589 2.4852 0.0000 16 6 3.4557 1.2935 0.0054 17 6 4.2301 0.1151 0.0108 18 1 3.7451 -0.8499 0.0111 19 6 5.6280 0.1962 0.0157 20 7 6.2153 1.3646 0.0147 21 14 6.6541 -1.3648 0.0220 22 1 5.7560 -2.5475 0.0215 23 1 7.5153 -1.3961 -1.1874 24 1 7.5066 -1.3918 1.2377 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2172 2.3461 0.0014 29 1 1.4088 4.5186 0.0019 30 1 2.2793 6.0842 -0.0092 31 1 3.0652 8.9132 -1.0252 32 1 2.3030 8.4537 0.5164 33 1 3.8286 9.3707 0.5164 34 1 5.9326 8.2819 0.0010 35 1 8.0016 6.1997 -1.0276 36 1 7.9799 7.0892 0.5140 37 1 8.0233 5.3098 0.5138 38 1 6.0353 4.0198 -0.0005 39 1 7.1837 1.4208 0.0178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239522604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:09 Heat of formation + Delta-G solvation = -7.774977 kcal Electronic energy + Delta-G solvation = -21494.640235 eV Core-core repulsion = 18366.226135 eV Total energy + Delta-G solvation = -3128.414100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93661 -40.05925 -38.34009 -35.65150 -34.32614 -33.48378 -32.30046 -30.61747 -28.22999 -28.12843 -27.60827 -26.92560 -24.08094 -23.39913 -21.31207 -21.26058 -19.32408 -18.46798 -17.59179 -17.09257 -16.73783 -16.35832 -16.08652 -15.86989 -14.90758 -14.89910 -14.70962 -14.31345 -14.17245 -14.10103 -13.93048 -13.70451 -13.24775 -13.10064 -12.95632 -12.94247 -12.66917 -12.54237 -12.50140 -12.11956 -11.86137 -11.85343 -11.77590 -11.53128 -11.26171 -10.07088 -9.84587 -9.63030 -9.33856 -8.63334 -8.30706 -6.37839 0.08030 0.59974 0.95223 1.26451 1.40101 1.53455 1.55454 2.24088 2.73654 2.81110 3.09115 3.77447 3.91447 3.97197 4.02477 4.25052 4.29801 4.39582 4.45650 4.53009 4.53878 4.59180 4.69302 4.71238 4.80081 4.85261 4.91706 4.93925 4.99560 5.08118 5.12574 5.28815 5.30376 5.42818 5.54786 5.63941 5.73318 5.80654 5.91826 6.10203 6.30064 6.31293 6.39089 6.79824 7.12422 8.10530 8.45154 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.006242 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.392075 B = 4484.376687 C = 6497.004596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C -0.045 4.045 4 C -0.147 4.147 5 C -0.268 4.268 6 C 0.123 3.877 7 C -0.042 4.042 8 C -0.126 4.126 9 C -0.093 4.093 10 C -0.104 4.104 11 C -0.125 4.125 12 C -0.101 4.101 13 C -0.105 4.105 14 C -0.117 4.117 15 N -0.477 5.477 16 C 0.213 3.787 17 C -0.451 4.451 18 H 0.084 0.916 19 C 0.024 3.976 20 N -0.748 5.748 21 Si 0.985 3.015 22 H -0.259 1.259 23 H -0.265 1.265 24 H -0.265 1.265 25 H 0.115 0.885 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.141 0.859 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.119 0.881 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 9.488 -0.036 9.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.247 6.247 3 C -0.093 4.093 4 C -0.171 4.171 5 C -0.291 4.291 6 C -0.017 4.017 7 C -0.043 4.043 8 C -0.145 4.145 9 C -0.093 4.093 10 C -0.160 4.160 11 C -0.143 4.143 12 C -0.101 4.101 13 C -0.162 4.162 14 C -0.136 4.136 15 N -0.192 5.192 16 C 0.085 3.915 17 C -0.483 4.483 18 H 0.102 0.898 19 C -0.197 4.197 20 N -0.370 5.370 21 Si 0.806 3.194 22 H -0.182 1.182 23 H -0.189 1.189 24 H -0.189 1.189 25 H 0.133 0.867 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.158 0.842 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.168 0.832 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.137 0.863 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.257 9.406 -0.036 9.490 hybrid contribution -0.899 -1.007 -0.013 1.350 sum -2.157 8.399 -0.049 8.671 Atomic orbital electron populations 1.23130 0.78465 1.04472 1.00996 1.85881 1.21672 1.27122 1.90023 1.20413 0.93449 0.84767 1.10706 1.21253 0.99509 0.91698 1.04600 1.21407 0.93901 0.97657 1.16129 1.20345 0.90822 0.92818 0.97762 1.18890 0.93598 0.91360 1.00408 1.21234 1.00051 0.90996 1.02180 1.20145 0.94320 0.95504 0.99366 1.20782 0.99593 0.92527 1.03142 1.21233 0.93439 0.97892 1.01713 1.20198 0.97516 0.92509 0.99864 1.20759 0.89586 1.03104 1.02740 1.21505 0.94170 0.98666 0.99298 1.68826 1.36102 0.95944 1.18345 1.18626 0.86882 0.92670 0.93327 1.19740 0.91966 0.92773 1.43778 0.89767 1.26910 0.99193 1.00756 0.92848 1.70205 1.10863 1.26527 1.29439 0.85112 0.77806 0.77631 0.78868 1.18236 1.18939 1.18946 0.86707 0.92983 0.92979 0.84178 0.85187 0.85185 0.90233 0.91107 0.89848 0.83196 0.90678 0.89299 0.92655 0.86328 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.83 113.37 1.11 1.89 16 2 O -0.33 -15.53 9.61 -88.29 -0.85 -16.38 16 3 C -0.04 -2.32 6.74 23.26 0.16 -2.17 16 4 C -0.15 -6.64 9.11 22.50 0.21 -6.44 16 5 C -0.27 -12.34 9.46 22.74 0.22 -12.12 16 6 C 0.12 6.37 6.74 42.21 0.28 6.65 16 7 C -0.04 -1.89 5.88 -20.04 -0.12 -2.01 16 8 C -0.13 -4.55 9.07 22.50 0.20 -4.35 16 9 C -0.09 -2.74 5.88 -19.89 -0.12 -2.85 16 10 C -0.10 -2.04 10.01 71.24 0.71 -1.33 16 11 C -0.12 -3.60 9.35 22.32 0.21 -3.39 16 12 C -0.10 -3.48 5.87 -19.90 -0.12 -3.60 16 13 C -0.11 -2.87 10.01 71.24 0.71 -2.16 16 14 C -0.12 -5.21 9.22 22.50 0.21 -5.01 16 15 N -0.48 -27.74 6.90 -177.85 -1.23 -28.96 16 16 C 0.21 12.49 6.56 40.34 0.26 12.75 16 17 C -0.45 -25.87 8.94 23.38 0.21 -25.66 16 18 H 0.08 4.73 7.31 -2.91 -0.02 4.71 16 19 C 0.02 1.29 5.50 85.28 0.47 1.76 16 20 N -0.75 -40.86 11.08 21.84 0.24 -40.61 16 21 Si 0.99 39.83 29.56 68.60 2.03 41.86 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 25 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 26 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 27 H 0.05 1.53 7.69 -2.38 -0.02 1.51 16 28 H 0.14 5.15 6.43 -2.91 -0.02 5.13 16 29 H 0.13 5.03 6.16 -2.91 -0.02 5.01 16 30 H 0.13 4.25 6.16 -2.92 -0.02 4.23 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 33 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 34 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 1.86 8.08 -2.38 -0.02 1.84 16 37 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 38 H 0.12 6.04 7.15 -2.92 -0.02 6.02 16 39 H 0.28 13.67 8.29 -92.71 -0.77 12.90 16 Total: -1.00 -70.31 328.32 5.87 -64.44 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 1.06 Total: 27.68 kcal Atomic # 6 Polarization: -52.63 SS G_CDS: 4.61 Total: -48.02 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -0.98 Total: -69.58 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.85 Total: -16.38 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -70.31 5.87 -64.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239522604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.669 kcal (2) G-P(sol) polarization free energy of solvation -70.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds