Wall clock time and date at job start Tue Mar 31 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38334 * 119.87127 * 2 1 4 4 C 1.38000 * 120.12674 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.06599 * 179.97438 * 4 3 2 6 6 C 1.39400 * 119.87164 * 359.97438 * 4 3 2 7 7 C 1.48282 * 120.12576 * 180.02562 * 6 4 3 8 8 C 1.39424 * 119.65153 * 123.70075 * 7 6 4 9 9 C 1.38230 * 119.14738 * 180.02562 * 8 7 6 10 10 C 1.39417 * 118.45513 * 359.97438 * 9 8 7 11 11 O 1.35714 * 120.38886 * 180.02562 * 10 9 8 12 12 C 1.34804 * 116.99615 * 354.20679 * 11 10 9 13 13 H 1.07997 * 120.00525 * 354.68449 * 12 11 10 14 14 C 1.38664 * 119.99927 * 174.68326 * 12 11 10 15 15 N 1.31553 * 119.99694 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00175 * 179.72247 * 14 12 11 17 17 H 1.48500 * 109.47121 * 270.27971 * 16 14 12 18 18 H 1.48501 * 109.46801 * 30.27613 * 16 14 12 19 19 H 1.48493 * 109.47119 * 150.27393 * 16 14 12 20 20 C 1.38968 * 119.22768 * 0.27985 * 10 9 8 21 21 N 1.31670 * 120.78567 * 359.44662 * 20 10 9 22 22 C 1.39393 * 119.74912 * 0.27711 * 6 4 3 23 23 C 1.50694 * 120.06794 * 179.72307 * 22 6 4 24 24 C 1.38005 * 119.86885 * 359.44590 * 22 6 4 25 25 H 1.09000 * 109.46676 * 90.00214 * 1 2 3 26 26 H 1.09000 * 109.46985 * 210.00083 * 1 2 3 27 27 H 1.08998 * 109.47098 * 329.99749 * 1 2 3 28 28 H 1.08000 * 119.93363 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46732 * 264.67103 * 5 4 3 30 30 H 1.08996 * 109.46844 * 24.67404 * 5 4 3 31 31 H 1.08998 * 109.46733 * 144.66851 * 5 4 3 32 32 H 1.07998 * 120.42861 * 0.02562 * 8 7 6 33 33 H 1.07999 * 120.77094 * 180.02562 * 9 8 7 34 34 H 0.97001 * 120.00369 * 359.71525 * 15 14 12 35 35 H 1.07997 * 119.61089 * 179.70512 * 20 10 9 36 36 H 1.08999 * 109.47014 * 90.25935 * 23 22 6 37 37 H 1.08994 * 109.47393 * 210.25860 * 23 22 6 38 38 H 1.09000 * 109.47296 * 330.26142 * 23 22 6 39 39 H 1.07998 * 119.94153 * 180.29403 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1996 0.0000 4 6 3.5760 1.2057 -0.0005 5 6 4.3252 2.5133 -0.0011 6 6 4.2757 0.0000 -0.0005 7 6 5.7585 0.0001 -0.0005 8 6 6.4483 -0.6722 1.0075 9 6 7.8305 -0.6650 0.9977 10 6 8.4840 0.0183 -0.0269 11 8 9.8399 0.0504 -0.0749 12 6 10.5021 -0.4967 0.9640 13 1 9.9559 -0.8566 1.8234 14 6 11.8847 -0.5975 0.9293 15 7 12.5500 -0.1587 -0.1173 16 14 12.8030 -1.3486 2.3722 17 1 13.1474 -0.2836 3.3481 18 1 11.9434 -2.3646 3.0311 19 1 14.0478 -1.9946 1.8845 20 6 7.7308 0.6708 -0.9955 21 7 6.4149 0.6399 -0.9599 22 6 3.5761 -1.2056 -0.0058 23 6 4.3253 -2.5132 -0.0122 24 6 2.1961 -1.1996 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6529 2.1330 -0.0004 29 1 4.5882 2.7808 -1.0245 30 1 3.6957 3.2928 0.4279 31 1 5.2335 2.4119 0.5929 32 1 5.9096 -1.1920 1.7860 33 1 8.3912 -1.1775 1.7654 34 1 12.0732 0.2315 -0.8665 35 1 8.2306 1.2060 -1.7893 36 1 4.5022 -2.8355 1.0139 37 1 3.7355 -3.2673 -0.5333 38 1 5.2799 -2.3825 -0.5217 39 1 1.6530 -2.1330 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239548751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:16 Heat of formation + Delta-G solvation = 5.319842 kcal Electronic energy + Delta-G solvation = -21208.773458 eV Core-core repulsion = 18080.927192 eV Total energy + Delta-G solvation = -3127.846266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16361 -39.07869 -37.26603 -33.74100 -33.45070 -32.46396 -31.35303 -29.55505 -27.82519 -26.57365 -26.41100 -24.94136 -22.72272 -22.11795 -20.54965 -20.13740 -18.58387 -17.21581 -16.33607 -16.00234 -15.56581 -14.53063 -14.19437 -14.17672 -14.03379 -13.98873 -13.78977 -13.32522 -13.08045 -12.88954 -12.88130 -12.70070 -12.56131 -12.44269 -12.11252 -11.84408 -11.51467 -11.10781 -11.00216 -10.87240 -10.79531 -10.61298 -10.41465 -9.94848 -9.10537 -8.95678 -8.88269 -8.41399 -8.32723 -7.40633 -6.96175 -4.23886 1.28771 1.53507 1.92982 2.15263 3.15016 3.20679 3.34125 3.80417 3.96703 4.45889 4.69563 4.85213 4.88452 4.97461 4.99077 5.02976 5.30095 5.34370 5.39830 5.49914 5.54970 5.64105 5.69234 5.74353 5.77055 5.81900 5.83480 5.95963 5.98930 6.03377 6.12773 6.27720 6.42342 6.48308 6.63408 6.66460 6.78126 6.89602 6.93915 7.15991 7.28413 7.37910 8.18979 8.64374 8.72457 9.36113 10.47727 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033316 B = 0.003608 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.237000 B = 7757.731120 C = 8169.696707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.089 4.089 3 C -0.131 4.131 4 C -0.055 4.055 5 C -0.105 4.105 6 C -0.015 4.015 7 C 0.051 3.949 8 C -0.098 4.098 9 C -0.198 4.198 10 C 0.110 3.890 11 O -0.187 6.187 12 C -0.472 4.472 13 H 0.086 0.914 14 C 0.014 3.986 15 N -0.871 5.871 16 Si 1.099 2.901 17 H -0.279 1.279 18 H -0.281 1.281 19 H -0.274 1.274 20 C 0.026 3.974 21 N -0.426 5.426 22 C -0.067 4.067 23 C -0.114 4.114 24 C -0.130 4.130 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.285 0.715 35 H 0.150 0.850 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.011 -0.988 2.304 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.056 4.056 5 C -0.162 4.162 6 C -0.016 4.016 7 C -0.085 4.085 8 C -0.118 4.118 9 C -0.224 4.224 10 C 0.053 3.947 11 O -0.088 6.088 12 C -0.548 4.548 13 H 0.103 0.897 14 C -0.193 4.193 15 N -0.501 5.501 16 Si 0.922 3.078 17 H -0.205 1.205 18 H -0.207 1.207 19 H -0.199 1.199 20 C -0.137 4.137 21 N -0.135 5.135 22 C -0.068 4.068 23 C -0.171 4.171 24 C -0.148 4.148 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.095 0.905 35 H 0.167 0.833 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.711 -0.866 2.050 16.859 hybrid contribution -1.098 -0.148 0.201 1.126 sum -17.809 -1.014 2.250 17.979 Atomic orbital electron populations 1.20747 0.91556 1.02376 1.02000 1.19835 0.95660 0.93122 1.00314 1.20759 0.93253 0.97290 1.03552 1.19941 0.93144 0.94914 0.97551 1.20702 0.99537 0.93034 1.02896 1.18196 0.90508 0.92008 1.00865 1.18981 0.91680 1.02742 0.95064 1.21690 0.93804 0.98178 0.98114 1.21481 0.94100 1.04921 1.01900 1.20406 0.85150 0.94443 0.94672 1.83665 1.12902 1.68568 1.43707 1.22307 0.92250 1.44198 0.96051 0.89674 1.26639 0.92015 0.97003 1.03670 1.70545 1.39560 1.33530 1.06462 0.83052 0.75889 0.76293 0.72551 1.20484 1.20676 1.19852 1.21743 0.88311 1.03601 1.00013 1.67495 1.08220 1.15236 1.22574 1.19892 0.93356 0.94585 0.98965 1.20834 1.00438 0.93613 1.02204 1.20703 0.93131 0.97294 1.03645 0.91473 0.91831 0.91817 0.86408 0.90602 0.92560 0.91616 0.86324 0.84450 0.90484 0.83304 0.91251 0.91933 0.91071 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.09 -1.08 5.88 -104.55 -0.62 -1.70 16 3 C -0.13 -1.71 9.32 -39.63 -0.37 -2.08 16 4 C -0.05 -0.84 5.91 -104.28 -0.62 -1.46 16 5 C -0.11 -1.53 8.95 36.01 0.32 -1.20 16 6 C -0.01 -0.25 5.54 -104.90 -0.58 -0.83 16 7 C 0.05 0.95 4.21 -82.93 -0.35 0.60 16 8 C -0.10 -1.81 8.19 -39.14 -0.32 -2.13 16 9 C -0.20 -4.18 9.22 -39.15 -0.36 -4.54 16 10 C 0.11 2.56 6.67 -38.87 -0.26 2.30 16 11 O -0.19 -5.01 9.17 0.23 0.00 -5.01 16 12 C -0.47 -12.67 9.46 30.89 0.29 -12.38 16 13 H 0.09 2.14 5.34 -52.49 -0.28 1.86 16 14 C 0.01 0.37 5.49 -17.51 -0.10 0.27 16 15 N -0.87 -24.98 13.70 55.48 0.76 -24.22 16 16 Si 1.10 22.68 29.92 -169.99 -5.09 17.59 16 17 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 18 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 C 0.03 0.56 11.14 -17.35 -0.19 0.36 16 21 N -0.43 -8.58 9.39 -9.61 -0.09 -8.67 16 22 C -0.07 -0.99 5.88 -104.28 -0.61 -1.60 16 23 C -0.11 -1.52 8.64 36.00 0.31 -1.21 16 24 C -0.13 -1.65 9.34 -39.63 -0.37 -2.02 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 31 H 0.06 1.07 7.19 -51.93 -0.37 0.70 16 32 H 0.12 1.90 7.55 -52.49 -0.40 1.50 16 33 H 0.14 2.87 5.83 -52.49 -0.31 2.56 16 34 H 0.28 8.33 7.97 -40.82 -0.33 8.01 16 35 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 36 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 37 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 38 H 0.07 1.10 6.66 -51.93 -0.35 0.75 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -29.44 328.50 -7.94 -37.39 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -5.02 Total: 6.18 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -3.46 Total: -28.22 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.67 Total: -32.89 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: 0.00 Total: -5.01 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.09 Total: 17.59 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.44 -7.94 -37.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239548751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.706 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds