Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35528 * 117.00064 * 2 1 4 4 C 1.39106 * 120.48827 * 0.02562 * 3 2 1 5 5 C 1.38326 * 118.64164 * 179.97438 * 4 3 2 6 6 C 1.40075 * 119.56906 * 359.97438 * 5 4 3 7 7 C 1.48262 * 119.51850 * 179.97438 * 6 5 4 8 8 C 1.39438 * 120.12541 * 48.52808 * 7 6 5 9 9 C 1.37970 * 119.87006 * 179.72583 * 8 7 6 10 10 C 1.38358 * 120.12735 * 0.27638 * 9 8 7 11 11 C 1.38316 * 120.26099 * 359.97438 * 10 9 8 12 12 C 1.50704 * 119.93725 * 179.97438 * 11 10 9 13 13 C 1.38021 * 120.13048 * 0.02562 * 11 10 9 14 14 C 1.50700 * 120.06836 * 180.02562 * 13 11 10 15 15 N 1.32175 * 120.96446 * 0.26247 * 6 5 4 16 16 C 1.33577 * 121.46612 * 359.47006 * 15 6 5 17 17 C 1.40996 * 119.84041 * 180.24684 * 16 15 6 18 18 H 1.08000 * 120.00233 * 185.92251 * 17 16 15 19 19 C 1.40033 * 119.99740 * 5.91966 * 17 16 15 20 20 N 1.30774 * 119.99930 * 354.82631 * 19 17 16 21 21 Si 1.86799 * 119.99820 * 174.82405 * 19 17 16 22 22 H 1.48493 * 109.47357 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46922 * 120.00716 * 21 19 17 24 24 H 1.48501 * 109.47009 * 239.99831 * 21 19 17 25 25 H 1.09000 * 109.47574 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46730 * 299.99984 * 1 2 3 27 27 H 1.09006 * 109.47074 * 59.99645 * 1 2 3 28 28 H 1.08004 * 120.67750 * 359.95780 * 4 3 2 29 29 H 1.07996 * 120.21789 * 179.97438 * 5 4 3 30 30 H 1.08006 * 120.06552 * 0.02562 * 8 7 6 31 31 H 1.07994 * 119.93731 * 180.30222 * 9 8 7 32 32 H 1.08001 * 119.86952 * 180.02562 * 10 9 8 33 33 H 1.09006 * 109.46886 * 90.00094 * 12 11 10 34 34 H 1.09001 * 109.47107 * 209.99754 * 12 11 10 35 35 H 1.08993 * 109.47361 * 330.00154 * 12 11 10 36 36 H 1.09001 * 109.46752 * 84.33805 * 14 13 11 37 37 H 1.08996 * 109.47358 * 204.34194 * 14 13 11 38 38 H 1.08994 * 109.47143 * 324.34638 * 14 13 11 39 39 H 0.96997 * 119.99937 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2967 2.3806 0.0005 5 6 1.9641 3.5922 0.0011 6 6 3.3647 3.6099 0.0016 7 6 4.0789 4.9091 0.0016 8 6 3.7157 5.9074 0.9049 9 6 4.3877 7.1124 0.9040 10 6 5.4162 7.3334 0.0054 11 6 5.7774 6.3488 -0.8964 12 6 6.8985 6.5976 -1.8724 13 6 5.1125 5.1394 -0.9050 14 6 5.5076 4.0675 -1.8878 15 7 4.0590 2.4852 -0.0036 16 6 3.4558 1.2934 0.0010 17 6 4.2301 0.1151 0.0005 18 1 3.7490 -0.8473 -0.0923 19 6 5.6232 0.1928 0.1202 20 7 6.2145 1.3592 0.1307 21 14 6.6367 -1.3696 0.2651 22 1 5.7357 -2.5494 0.2273 23 1 7.5964 -1.4437 -0.8657 24 1 7.3840 -1.3577 1.5483 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2172 2.3461 0.0003 29 1 1.4089 4.5186 0.0011 30 1 2.9132 5.7358 1.6071 31 1 4.1105 7.8845 1.6064 32 1 5.9396 8.2781 0.0087 33 1 7.8431 6.2829 -1.4286 34 1 6.7186 6.0292 -2.7849 35 1 6.9447 7.6604 -2.1095 36 1 6.3448 3.4968 -1.4858 37 1 4.6620 3.4011 -2.0581 38 1 5.8019 4.5292 -2.8302 39 1 7.1794 1.4130 0.2140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239715802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = 13.703493 kcal Electronic energy + Delta-G solvation = -21951.813921 eV Core-core repulsion = 18824.331197 eV Total energy + Delta-G solvation = -3127.482724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.36146 -38.52786 -36.59119 -33.78508 -32.78743 -31.92161 -30.41694 -28.98697 -27.23718 -26.53718 -25.79934 -25.16806 -22.30337 -21.52561 -20.07785 -19.71741 -17.45058 -16.69057 -16.04466 -15.48210 -15.02694 -14.78313 -14.67794 -14.46703 -13.69672 -13.44303 -12.99211 -12.79937 -12.52785 -12.40065 -12.36136 -12.04575 -11.87813 -11.68456 -11.28472 -11.25600 -11.14156 -11.06917 -10.71346 -10.56241 -10.38650 -10.31056 -10.18642 -9.76746 -9.39678 -8.25233 -8.10740 -7.93415 -7.69205 -6.98403 -6.43702 -4.40173 1.78263 1.99073 2.72854 2.92808 3.11393 3.16054 3.17959 3.96964 4.33319 4.40706 4.73221 5.29680 5.32576 5.41420 5.61600 5.68732 5.69192 5.71967 5.83052 5.86754 5.90380 5.94023 6.01915 6.13339 6.16871 6.24662 6.41033 6.56548 6.59594 6.70128 6.75882 6.79733 7.00527 7.06800 7.18029 7.21891 7.36286 7.43044 7.54295 7.65824 7.88734 8.19122 8.29666 8.69875 8.98768 9.99171 10.29141 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.006842 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.809946 B = 4091.267364 C = 5673.135294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.309 6.309 3 C -0.029 4.029 4 C -0.148 4.148 5 C -0.270 4.270 6 C 0.151 3.849 7 C -0.004 4.004 8 C -0.112 4.112 9 C -0.134 4.134 10 C -0.129 4.129 11 C -0.101 4.101 12 C -0.110 4.110 13 C -0.044 4.044 14 C -0.101 4.101 15 N -0.442 5.442 16 C 0.250 3.750 17 C -0.412 4.412 18 H 0.090 0.910 19 C 0.068 3.932 20 N -0.710 5.710 21 Si 0.906 3.094 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 5.850 -1.497 6.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.078 4.078 4 C -0.172 4.172 5 C -0.293 4.293 6 C 0.009 3.991 7 C -0.004 4.004 8 C -0.131 4.131 9 C -0.152 4.152 10 C -0.147 4.147 11 C -0.101 4.101 12 C -0.167 4.167 13 C -0.045 4.045 14 C -0.157 4.157 15 N -0.156 5.156 16 C 0.122 3.878 17 C -0.443 4.443 18 H 0.108 0.892 19 C -0.157 4.157 20 N -0.332 5.332 21 Si 0.730 3.270 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.199 1.199 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.219 5.744 -1.500 5.941 hybrid contribution -0.940 -0.393 0.299 1.062 sum -1.159 5.351 -1.202 5.605 Atomic orbital electron populations 1.22755 0.81731 1.01864 0.99925 1.85942 1.18294 1.27896 1.90073 1.20365 0.93726 0.83181 1.10499 1.20856 0.97715 0.92611 1.06004 1.20948 0.94003 0.96163 1.18227 1.19646 0.89364 0.92076 0.98001 1.18611 0.94701 0.92228 0.94906 1.21116 1.00117 0.93101 0.98783 1.20836 0.97444 0.97174 0.99741 1.20845 0.98461 0.98588 0.96849 1.19627 0.98183 0.94021 0.98264 1.20771 0.96547 1.01212 0.98155 1.19867 0.93820 0.94118 0.96687 1.20763 1.03871 0.96146 0.94899 1.69085 1.34412 0.95016 1.17108 1.18188 0.84961 0.92197 0.92409 1.19533 0.90876 0.93083 1.40845 0.89170 1.26044 0.98590 0.97179 0.93924 1.70144 1.10222 1.24363 1.28445 0.86286 0.79812 0.82382 0.78496 1.18364 1.19908 1.19930 0.89882 0.94194 0.94205 0.87889 0.88538 0.86539 0.86870 0.87071 0.91594 0.91356 0.92443 0.89394 0.91083 0.93912 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.83 101.05 0.99 1.55 16 2 O -0.31 -7.02 9.62 -18.28 -0.18 -7.19 16 3 C -0.03 -0.72 6.74 -38.06 -0.26 -0.98 16 4 C -0.15 -3.33 9.11 -39.23 -0.36 -3.69 16 5 C -0.27 -6.14 9.49 -38.86 -0.37 -6.51 16 6 C 0.15 3.66 5.42 -82.91 -0.45 3.21 16 7 C 0.00 -0.08 5.60 -104.90 -0.59 -0.67 16 8 C -0.11 -2.12 9.45 -39.23 -0.37 -2.49 16 9 C -0.13 -2.17 10.03 -39.64 -0.40 -2.57 16 10 C -0.13 -2.04 9.69 -39.51 -0.38 -2.43 16 11 C -0.10 -1.74 5.87 -104.67 -0.61 -2.35 16 12 C -0.11 -1.52 9.60 36.01 0.35 -1.18 16 13 C -0.04 -0.90 5.90 -104.27 -0.62 -1.51 16 14 C -0.10 -2.05 8.55 36.01 0.31 -1.75 16 15 N -0.44 -11.71 6.05 -7.56 -0.05 -11.75 16 16 C 0.25 6.77 6.56 -84.86 -0.56 6.22 16 17 C -0.41 -10.96 8.93 -37.86 -0.34 -11.30 16 18 H 0.09 2.36 7.33 -52.49 -0.38 1.97 16 19 C 0.07 1.69 5.49 -17.33 -0.10 1.59 16 20 N -0.71 -18.07 11.20 55.55 0.62 -17.44 16 21 Si 0.91 18.56 29.56 -169.99 -5.03 13.54 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 27 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 28 H 0.10 2.00 6.43 -52.48 -0.34 1.66 16 29 H 0.10 1.98 8.00 -52.49 -0.42 1.56 16 30 H 0.12 2.07 8.00 -52.48 -0.42 1.65 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.92 6.03 -51.93 -0.31 0.61 16 35 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.09 1.92 7.86 -51.93 -0.41 1.51 16 37 H 0.07 1.65 6.30 -51.93 -0.33 1.32 16 38 H 0.04 0.74 6.19 -51.93 -0.32 0.42 16 39 H 0.27 6.32 8.29 -40.82 -0.34 5.98 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -28.92 324.31 -8.46 -37.38 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.98 Total: 5.43 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -3.74 Total: -24.84 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.58 Total: -29.20 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.18 Total: -7.19 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.92 -8.46 -37.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239715802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.081 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds