Wall clock time and date at job start Tue Mar 31 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47433 * 2 1 4 4 N 1.31811 * 119.66903 * 93.63819 * 3 2 1 5 5 C 1.32289 * 121.77456 * 180.02562 * 4 3 2 6 6 O 1.35653 * 119.55584 * 180.02562 * 5 4 3 7 7 C 1.42894 * 116.99881 * 359.97438 * 6 5 4 8 8 C 1.39020 * 120.88828 * 359.71374 * 5 4 3 9 9 C 1.38151 * 119.23630 * 0.53987 * 8 5 4 10 10 C 1.39173 * 119.66140 * 273.61591 * 3 2 1 11 11 C 1.48387 * 120.47978 * 0.02562 * 10 3 2 12 12 C 1.39737 * 120.00062 * 303.14048 * 11 10 3 13 13 C 1.38391 * 120.37756 * 179.97438 * 12 11 10 14 14 C 1.37719 * 120.38072 * 0.02562 * 13 12 11 15 15 C 1.40759 * 119.99100 * 0.02562 * 14 13 12 16 16 C 1.41423 * 120.18481 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99849 * 206.34407 * 16 15 14 18 18 C 1.39927 * 120.00297 * 26.34705 * 16 15 14 19 19 N 1.30837 * 119.99798 * 13.81457 * 18 16 15 20 20 Si 1.86802 * 120.00188 * 193.81771 * 18 16 15 21 21 H 1.48496 * 109.46817 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47047 * 119.99809 * 20 18 16 23 23 H 1.48496 * 109.46915 * 239.99707 * 20 18 16 24 24 C 1.38740 * 120.00110 * 122.85898 * 11 10 3 25 25 H 1.08999 * 109.47030 * 304.94842 * 1 2 3 26 26 H 1.09007 * 109.46778 * 64.94798 * 1 2 3 27 27 H 1.09003 * 109.47293 * 184.94809 * 1 2 3 28 28 H 1.09006 * 109.47287 * 239.99293 * 2 1 3 29 29 H 1.09007 * 109.46741 * 120.00003 * 2 1 3 30 30 H 1.08997 * 109.47708 * 60.00005 * 7 6 5 31 31 H 1.09005 * 109.47234 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47100 * 299.99811 * 7 6 5 33 33 H 1.07994 * 120.38263 * 180.31065 * 8 5 4 34 34 H 1.07990 * 120.81294 * 179.74701 * 9 8 5 35 35 H 1.08000 * 119.80821 * 359.97438 * 12 11 10 36 36 H 1.07999 * 119.80942 * 180.02562 * 13 12 11 37 37 H 1.08005 * 120.00338 * 180.02562 * 14 13 12 38 38 H 0.96999 * 119.99798 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.18848 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3184 2.0116 1.1430 5 6 2.7616 3.2572 1.1915 6 8 3.0426 3.8211 2.3929 7 6 2.8357 3.0130 3.5531 8 6 2.9493 3.9937 0.0276 9 6 2.6565 3.4146 -1.1920 10 6 2.1901 2.0955 -1.2070 11 6 1.8667 1.4263 -2.4913 12 6 2.4959 0.2258 -2.8314 13 6 2.1999 -0.4053 -4.0269 14 6 1.2822 0.1429 -4.8952 15 6 0.6398 1.3521 -4.5690 16 6 -0.3036 1.9183 -5.4574 17 1 -0.4774 2.9842 -5.4530 18 6 -1.0120 1.0976 -6.3421 19 7 -1.0114 -0.1998 -6.1736 20 14 -1.9585 1.8544 -7.7637 21 1 -1.8009 3.3307 -7.7330 22 1 -1.4301 1.3262 -9.0470 23 1 -3.3972 1.5079 -7.6406 24 6 0.9354 1.9893 -3.3517 25 1 -0.3633 0.5887 0.8423 26 1 -0.3633 0.4352 -0.9311 27 1 -0.3634 -1.0238 0.0886 28 1 1.8934 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 3.4630 2.1237 3.4932 31 1 3.0974 3.5832 4.4445 32 1 1.7883 2.7159 3.6068 33 1 3.3162 5.0083 0.0764 34 1 2.7890 3.9649 -2.1118 35 1 3.2174 -0.2120 -2.1574 36 1 2.6913 -1.3330 -4.2804 37 1 1.0554 -0.3550 -5.8265 38 1 -1.5027 -0.7687 -6.7866 39 1 0.4436 2.9145 -3.0897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239771997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:47 Heat of formation + Delta-G solvation = 2.490449 kcal Electronic energy + Delta-G solvation = -21445.477950 eV Core-core repulsion = 18317.508992 eV Total energy + Delta-G solvation = -3127.968958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45855 -38.31807 -37.08007 -34.01437 -33.57705 -32.14067 -30.14763 -29.90004 -28.21913 -26.76352 -25.34065 -24.07988 -22.84877 -21.18867 -20.66214 -20.28117 -17.92813 -17.35803 -16.56292 -15.86123 -15.55002 -14.94118 -14.64625 -14.34937 -14.22122 -13.64172 -13.37401 -13.22795 -13.07520 -12.83960 -12.49552 -12.05295 -11.93779 -11.72578 -11.63196 -11.25399 -11.18364 -11.00319 -10.97673 -10.67305 -10.50705 -10.41650 -9.80885 -9.54164 -9.44105 -9.31071 -9.18495 -8.15453 -7.52291 -7.15619 -6.76114 -4.41730 1.40141 1.56581 2.73044 2.90016 3.06012 3.10994 3.15863 3.25066 3.91296 4.05628 4.43990 4.58833 5.13032 5.22449 5.27506 5.33073 5.36737 5.49793 5.61565 5.67125 5.70850 5.76579 5.77956 6.13600 6.20829 6.23396 6.30697 6.37742 6.50927 6.63719 6.64631 6.75252 6.86574 7.01520 7.17847 7.27063 7.41672 7.51747 7.77965 7.97643 7.99669 8.16823 8.22151 8.58060 8.85027 8.89686 10.17649 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026238 B = 0.004099 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.903364 B = 6829.789416 C = 7170.301195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C 0.176 3.824 4 N -0.539 5.539 5 C 0.301 3.699 6 O -0.314 6.314 7 C 0.043 3.957 8 C -0.195 4.195 9 C -0.037 4.037 10 C -0.096 4.096 11 C -0.029 4.029 12 C -0.220 4.220 13 C -0.106 4.106 14 C -0.154 4.154 15 C 0.109 3.891 16 C -0.463 4.463 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.798 5.798 20 Si 0.908 3.092 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.275 1.275 24 C -0.200 4.200 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.279 0.721 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 2.517 9.959 11.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C 0.040 3.960 4 N -0.262 5.262 5 C 0.123 3.877 6 O -0.222 6.222 7 C -0.052 4.052 8 C -0.216 4.216 9 C -0.062 4.062 10 C -0.098 4.098 11 C -0.030 4.030 12 C -0.239 4.239 13 C -0.125 4.125 14 C -0.174 4.174 15 C 0.107 3.893 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.424 5.424 20 Si 0.733 3.267 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.200 1.200 24 C -0.220 4.220 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.090 0.910 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.280 2.122 10.725 11.741 hybrid contribution -0.458 0.559 -1.184 1.387 sum 3.821 2.681 9.541 10.622 Atomic orbital electron populations 1.21629 0.94107 1.01623 1.02411 1.20719 0.96821 0.90500 1.03965 1.20993 0.92662 0.96172 0.86201 1.67001 1.17990 1.10118 1.31100 1.19740 0.93443 0.88796 0.85740 1.86188 1.82220 1.41095 1.12653 1.22753 1.01944 0.95570 0.84977 1.20903 1.08707 1.01774 0.90205 1.21546 0.93488 0.93869 0.97295 1.19785 1.01228 0.94202 0.94610 1.18017 0.98363 0.95216 0.91362 1.20303 1.06385 0.97895 0.99348 1.20625 0.98629 0.98340 0.94899 1.21454 0.97203 0.98611 1.00087 1.17535 0.90292 0.91433 0.90084 1.19592 1.18699 0.95224 1.15788 0.90494 1.25873 0.95923 0.94577 0.97819 1.69806 1.34205 1.04661 1.33760 0.86264 0.79178 0.80564 0.80742 1.18468 1.19759 1.20017 1.21025 1.03350 1.02371 0.95251 0.93396 0.91475 0.92314 0.87951 0.91170 0.92583 0.89159 0.92555 0.84633 0.84071 0.89226 0.89180 0.86162 0.90981 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 37.16 0.37 -1.89 16 2 C -0.08 -1.35 5.74 -27.89 -0.16 -1.51 16 3 C 0.18 3.15 6.04 -82.26 -0.50 2.65 16 4 N -0.54 -9.29 9.10 -9.28 -0.08 -9.37 16 5 C 0.30 4.94 7.49 -17.07 -0.13 4.81 16 6 O -0.31 -4.58 10.47 -18.66 -0.20 -4.77 16 7 C 0.04 0.48 10.38 101.05 1.05 1.53 16 8 C -0.20 -3.01 10.03 -39.32 -0.39 -3.41 16 9 C -0.04 -0.62 9.78 -38.98 -0.38 -1.00 16 10 C -0.10 -1.80 5.40 -104.74 -0.57 -2.37 16 11 C -0.03 -0.61 4.89 -104.97 -0.51 -1.12 16 12 C -0.22 -4.60 7.71 -38.97 -0.30 -4.90 16 13 C -0.11 -2.36 10.01 -39.71 -0.40 -2.75 16 14 C -0.15 -3.82 8.67 -38.82 -0.34 -4.16 16 15 C 0.11 2.77 5.56 -106.87 -0.59 2.18 16 16 C -0.46 -11.89 9.06 -37.74 -0.34 -12.23 16 17 H 0.08 1.91 7.88 -52.49 -0.41 1.50 16 18 C 0.07 1.83 5.21 -17.34 -0.09 1.74 16 19 N -0.80 -20.06 10.84 55.55 0.60 -19.45 16 20 Si 0.91 18.31 29.58 -169.99 -5.03 13.28 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 C -0.20 -4.67 9.38 -38.53 -0.36 -5.03 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 1.77 4.64 -51.93 -0.24 1.52 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.09 1.71 7.22 -52.49 -0.38 1.33 16 36 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.12 3.10 6.14 -52.48 -0.32 2.78 16 38 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 39 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -27.02 329.87 -8.52 -35.54 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.14 Total: 7.27 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -3.65 Total: -27.46 kcal Atomic # 7 Polarization: -29.34 SS G_CDS: 0.52 Total: -28.83 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.20 Total: -4.77 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.02 -8.52 -35.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239771997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.027 kcal (2) G-P(sol) polarization free energy of solvation -27.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds