Wall clock time and date at job start Tue Mar 31 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35606 * 117.00116 * 2 1 4 4 C 1.38517 * 120.08175 * 359.97438 * 3 2 1 5 5 C 1.38026 * 120.31075 * 179.74132 * 4 3 2 6 6 C 1.39931 * 120.46633 * 0.55736 * 5 4 3 7 7 C 1.48375 * 119.91841 * 179.71430 * 6 5 4 8 8 C 1.39775 * 120.54126 * 235.69414 * 7 6 5 9 9 C 1.38406 * 118.31201 * 180.19732 * 8 7 6 10 10 C 1.50708 * 120.35813 * 179.80514 * 9 8 7 11 11 C 1.38317 * 119.28799 * 359.53409 * 9 8 7 12 12 N 1.31892 * 121.02794 * 0.25239 * 11 9 8 13 13 C 1.31742 * 121.85258 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.70269 * 180.02562 * 13 12 11 15 15 C 1.38618 * 120.16405 * 359.44735 * 6 5 4 16 16 C 1.40525 * 119.68608 * 0.26678 * 15 6 5 17 17 C 1.41182 * 120.22882 * 179.97438 * 16 15 6 18 18 H 1.08005 * 119.99869 * 204.85631 * 17 16 15 19 19 C 1.39899 * 119.99815 * 24.86454 * 17 16 15 20 20 N 1.30880 * 120.00293 * 17.38322 * 19 17 16 21 21 Si 1.86807 * 119.99758 * 197.38320 * 19 17 16 22 22 H 1.48501 * 109.46792 * 90.00280 * 21 19 17 23 23 H 1.48500 * 109.47088 * 209.99528 * 21 19 17 24 24 H 1.48498 * 109.47187 * 330.00100 * 21 19 17 25 25 H 1.09001 * 109.46667 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47307 * 299.99726 * 1 2 3 27 27 H 1.09001 * 109.47238 * 60.00313 * 1 2 3 28 28 H 1.08001 * 119.84491 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.76606 * 180.29481 * 5 4 3 30 30 H 1.07994 * 120.84505 * 0.02562 * 8 7 6 31 31 H 1.08995 * 109.47120 * 269.72768 * 10 9 8 32 32 H 1.08998 * 109.46707 * 29.72835 * 10 9 8 33 33 H 1.09002 * 109.46840 * 149.72338 * 10 9 8 34 34 H 1.08003 * 119.48671 * 180.27027 * 11 9 8 35 35 H 1.09003 * 109.46836 * 94.17912 * 14 13 12 36 36 H 1.09002 * 109.47495 * 214.18223 * 14 13 12 37 37 H 1.09003 * 109.47333 * 334.17745 * 14 13 12 38 38 H 1.07994 * 120.15456 * 180.29898 * 15 6 5 39 39 H 0.96999 * 119.99612 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3710 -0.0005 5 6 1.9136 3.6033 0.0048 6 6 3.3100 3.6935 -0.0008 7 6 3.9656 5.0246 -0.0014 8 6 4.8839 5.3636 -0.9991 9 6 5.4711 6.6161 -0.9526 10 6 6.4708 7.0281 -2.0024 11 6 5.1263 7.4877 0.0645 12 7 4.2528 7.1412 0.9899 13 6 3.6716 5.9589 0.9894 14 6 2.6798 5.6139 2.0703 15 6 4.0823 2.5425 -0.0004 16 6 3.4563 1.2843 0.0001 17 6 4.2318 0.1046 0.0000 18 1 3.8191 -0.8129 -0.3928 19 6 5.5348 0.1240 0.5089 20 7 5.9211 1.1073 1.2815 21 14 6.7234 -1.2536 0.0857 22 1 7.4670 -0.9032 -1.1511 23 1 7.6828 -1.4406 1.2037 24 1 5.9655 -2.5119 -0.1320 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2134 2.3132 -0.0005 29 1 1.3181 4.5043 0.0092 30 1 5.1312 4.6650 -1.7846 31 1 7.4740 6.7533 -1.6766 32 1 6.2421 6.5220 -2.9403 33 1 6.4193 8.1069 -2.1497 34 1 5.5793 8.4675 0.1013 35 1 1.6711 5.8368 1.7225 36 1 2.7560 4.5529 2.3083 37 1 2.8950 6.2025 2.9622 38 1 5.1600 2.6123 0.0001 39 1 6.8247 1.1208 1.6340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239899702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:28 Heat of formation + Delta-G solvation = 0.823031 kcal Electronic energy + Delta-G solvation = -21650.995575 eV Core-core repulsion = 18522.954312 eV Total energy + Delta-G solvation = -3128.041263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.95062 -38.61344 -36.26733 -34.07106 -33.59842 -32.09037 -29.91102 -29.38045 -27.97120 -26.53528 -25.25614 -25.10242 -22.99511 -21.34520 -20.87578 -19.64331 -17.42644 -16.58948 -16.18999 -15.72702 -15.34748 -14.77249 -14.67852 -14.54898 -14.09144 -13.35467 -13.06857 -12.96827 -12.78753 -12.61791 -12.49259 -12.31322 -11.99729 -11.71467 -11.65361 -11.54019 -11.36390 -11.22078 -10.98916 -10.78823 -10.49466 -10.06605 -9.94822 -9.60849 -9.25256 -9.06525 -8.96638 -8.21162 -7.57019 -6.95247 -6.70999 -4.29344 1.47622 1.72348 2.69930 2.84793 3.07935 3.12327 3.15847 3.94105 4.19487 4.44742 4.55751 4.74861 5.12119 5.16128 5.35402 5.38926 5.50962 5.66476 5.69909 5.72386 5.78884 5.87640 5.95171 6.03247 6.06949 6.11234 6.14063 6.26395 6.29279 6.55907 6.64932 6.74654 6.80068 7.04950 7.14955 7.23426 7.30096 7.60448 7.64311 7.90676 8.11420 8.32232 8.44353 8.63704 8.79612 8.99642 10.17829 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.006295 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.946166 B = 4446.810147 C = 5897.052331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.020 3.980 4 C -0.179 4.179 5 C -0.187 4.187 6 C -0.070 4.070 7 C -0.048 4.048 8 C -0.072 4.072 9 C -0.148 4.148 10 C -0.104 4.104 11 C 0.079 3.921 12 N -0.486 5.486 13 C 0.123 3.877 14 C -0.097 4.097 15 C -0.122 4.122 16 C 0.095 3.905 17 C -0.445 4.445 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.795 5.795 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.261 1.261 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 6.126 -3.124 7.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.226 6.226 3 C -0.024 4.024 4 C -0.198 4.198 5 C -0.206 4.206 6 C -0.071 4.071 7 C -0.049 4.049 8 C -0.097 4.097 9 C -0.150 4.150 10 C -0.162 4.162 11 C -0.078 4.078 12 N -0.195 5.195 13 C -0.015 4.015 14 C -0.154 4.154 15 C -0.142 4.142 16 C 0.092 3.908 17 C -0.474 4.474 18 H 0.101 0.899 19 C -0.144 4.144 20 N -0.421 5.421 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.185 1.185 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.145 0.855 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.649 6.602 -2.302 7.184 hybrid contribution 0.556 -0.972 -0.775 1.362 sum -1.094 5.630 -3.078 6.509 Atomic orbital electron populations 1.22744 0.81655 1.01798 0.99973 1.85962 1.18290 1.28282 1.90037 1.19329 0.92349 0.82644 1.08118 1.20529 0.97468 0.92651 1.09127 1.20069 0.92626 0.95349 1.12591 1.18214 0.92801 0.90154 1.05905 1.19870 0.95869 0.94986 0.94217 1.21597 0.94800 0.95260 0.98076 1.20762 1.00083 0.95433 0.98740 1.20655 0.97408 1.01349 0.96751 1.22408 0.95392 0.99163 0.90862 1.67382 1.08548 1.18356 1.25180 1.21349 0.96183 0.88684 0.95235 1.20694 0.96264 1.02991 0.95432 1.21158 0.99348 0.89399 1.04286 1.16960 0.87321 0.93845 0.92645 1.19418 0.96617 0.96583 1.34818 0.89859 1.25889 0.98857 0.96935 0.92720 1.69831 1.19085 1.30738 1.22459 0.86303 0.79824 0.81678 0.78929 1.19342 1.20363 1.18527 0.90007 0.94061 0.94199 0.88341 0.88957 0.85053 0.91292 0.91598 0.91700 0.83694 0.91044 0.89715 0.91614 0.85476 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.04 9.77 -18.52 -0.18 -7.22 16 3 C 0.02 0.49 6.72 -38.29 -0.26 0.23 16 4 C -0.18 -3.85 9.01 -39.56 -0.36 -4.21 16 5 C -0.19 -3.97 8.23 -39.03 -0.32 -4.29 16 6 C -0.07 -1.56 4.53 -104.95 -0.48 -2.03 16 7 C -0.05 -0.96 5.41 -104.75 -0.57 -1.53 16 8 C -0.07 -1.31 9.45 -38.95 -0.37 -1.67 16 9 C -0.15 -2.31 5.89 -104.53 -0.62 -2.92 16 10 C -0.10 -1.20 10.04 36.01 0.36 -0.84 16 11 C 0.08 1.26 10.85 -17.50 -0.19 1.07 16 12 N -0.49 -8.93 10.26 -9.20 -0.09 -9.02 16 13 C 0.12 2.37 6.79 -82.23 -0.56 1.81 16 14 C -0.10 -1.67 8.71 36.01 0.31 -1.36 16 15 C -0.12 -3.05 8.24 -38.58 -0.32 -3.37 16 16 C 0.10 2.48 5.58 -106.72 -0.60 1.89 16 17 C -0.44 -11.75 8.71 -37.84 -0.33 -12.08 16 18 H 0.08 2.20 7.64 -52.48 -0.40 1.80 16 19 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 20 N -0.80 -20.33 10.95 55.55 0.61 -19.72 16 21 Si 0.91 18.73 29.59 -169.99 -5.03 13.69 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 27 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 28 H 0.10 1.84 6.27 -52.49 -0.33 1.51 16 29 H 0.09 1.78 7.28 -52.49 -0.38 1.40 16 30 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.15 1.82 8.06 -52.48 -0.42 1.40 16 35 H 0.07 1.13 7.57 -51.93 -0.39 0.73 16 36 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.13 3.31 6.16 -52.49 -0.32 2.99 16 39 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -28.61 327.18 -8.21 -36.82 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.07 Total: 6.54 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -3.38 Total: -26.02 kcal Atomic # 7 Polarization: -29.26 SS G_CDS: 0.51 Total: -28.74 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.18 Total: -7.22 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.61 -8.21 -36.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239899702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.645 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds