Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35609 * 117.00330 * 2 1 4 4 C 1.39151 * 119.88358 * 0.23801 * 3 2 1 5 5 C 1.36412 * 120.43804 * 180.27512 * 4 3 2 6 6 C 1.40906 * 120.19053 * 359.76381 * 5 4 3 7 7 C 1.41236 * 120.12037 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00238 * 330.11078 * 7 6 5 9 9 C 1.39868 * 120.00176 * 150.11164 * 7 6 5 10 10 N 1.30896 * 120.00105 * 161.66652 * 9 7 6 11 11 Si 1.86797 * 119.99935 * 341.66781 * 9 7 6 12 12 H 1.48495 * 109.47208 * 95.41054 * 11 9 7 13 13 H 1.48503 * 109.47029 * 215.41413 * 11 9 7 14 14 H 1.48506 * 109.47194 * 335.41248 * 11 9 7 15 15 C 1.40620 * 119.75774 * 359.97438 * 6 5 4 16 16 C 1.38585 * 119.57323 * 359.97438 * 15 6 5 17 17 C 1.48347 * 120.09681 * 180.02562 * 16 15 6 18 18 C 1.39781 * 120.53885 * 65.00232 * 17 16 15 19 19 C 1.38407 * 118.31125 * 180.02562 * 18 17 16 20 20 C 1.50700 * 120.35643 * 179.97438 * 19 18 17 21 21 C 1.38310 * 119.28390 * 0.25297 * 19 18 17 22 22 N 1.31888 * 121.03878 * 359.49744 * 21 19 18 23 23 C 1.31744 * 121.84773 * 0.49307 * 22 21 19 24 24 C 1.50700 * 119.69886 * 179.75325 * 23 22 21 25 25 H 1.08997 * 109.47218 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46914 * 299.99764 * 1 2 3 27 27 H 1.09000 * 109.47015 * 59.99704 * 1 2 3 28 28 H 1.08001 * 119.78064 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.90574 * 179.74429 * 5 4 3 30 30 H 0.96998 * 119.99705 * 180.02562 * 10 9 7 31 31 H 1.08006 * 120.20752 * 180.02562 * 15 6 5 32 32 H 1.08001 * 120.84286 * 0.04274 * 18 17 16 33 33 H 1.08996 * 109.47105 * 89.99751 * 20 19 18 34 34 H 1.08997 * 109.47577 * 210.00156 * 20 19 18 35 35 H 1.09006 * 109.47132 * 330.00215 * 20 19 18 36 36 H 1.08008 * 119.47929 * 179.74604 * 21 19 18 37 37 H 1.09004 * 109.47265 * 270.02025 * 24 23 22 38 38 H 1.08998 * 109.47494 * 30.01981 * 24 23 22 39 39 H 1.09005 * 109.47287 * 150.02405 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2846 2.3738 0.0050 5 6 1.8921 3.5951 -0.0006 6 6 3.2981 3.6871 -0.0065 7 6 3.9256 4.9524 -0.0128 8 1 3.4372 5.7950 -0.4795 9 6 5.1796 5.1142 0.5853 10 7 5.9193 6.1513 0.2844 11 14 5.7986 3.8502 1.8134 12 1 6.6622 2.8638 1.1159 13 1 6.5833 4.5329 2.8734 14 1 4.6425 3.1490 2.4274 15 6 4.0743 2.5145 -0.0061 16 6 3.4467 1.2789 0.0007 17 6 4.2542 0.0344 0.0018 18 6 5.0719 -0.2807 1.0908 19 6 5.8058 -1.4532 1.0430 20 6 6.7027 -1.8377 2.1914 21 6 5.7116 -2.2653 -0.0726 22 7 4.9276 -1.9440 -1.0834 23 6 4.2103 -0.8390 -1.0828 24 6 3.3347 -0.5166 -2.2662 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2064 2.3110 0.0093 29 1 1.2937 4.4942 -0.0008 30 1 6.7891 6.2633 0.6989 31 1 5.1525 2.5765 -0.0101 32 1 5.1293 0.3739 1.9479 33 1 6.1397 -2.4360 2.9076 34 1 7.5454 -2.4182 1.8158 35 1 7.0719 -0.9367 2.6815 36 1 6.2861 -3.1789 -0.1151 37 1 3.9030 0.0670 -2.9905 38 1 2.9965 -1.4427 -2.7310 39 1 2.4711 0.0592 -1.9332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239900046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = 4.780028 kcal Electronic energy + Delta-G solvation = -22148.341373 eV Core-core repulsion = 19020.471698 eV Total energy + Delta-G solvation = -3127.869674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16778 -38.86079 -36.64029 -33.96248 -33.54996 -32.71724 -29.98188 -29.56783 -28.74891 -26.98245 -25.22191 -24.59846 -23.49264 -21.40112 -21.16689 -19.81360 -17.49060 -17.25514 -16.38545 -15.78640 -15.38660 -15.14937 -15.06355 -14.52903 -14.14432 -13.46720 -13.19238 -13.12180 -12.97103 -12.76933 -12.65503 -12.51017 -12.37639 -12.09341 -11.72466 -11.66115 -11.50165 -11.34549 -11.00476 -10.83818 -10.39565 -10.31850 -10.02153 -9.68261 -9.37800 -9.10993 -9.06914 -8.36199 -7.77234 -7.24752 -6.97814 -4.46001 1.40588 1.62800 2.39647 2.51084 3.05464 3.14144 3.24182 3.92715 4.06416 4.10531 4.36141 4.67385 5.04042 5.05106 5.23783 5.26139 5.32398 5.47294 5.51174 5.55003 5.63150 5.70102 5.80689 5.85571 5.97617 6.03028 6.08287 6.13671 6.23837 6.45257 6.51064 6.55252 6.63980 6.68266 6.84660 7.05470 7.12424 7.24465 7.41525 7.67098 7.81548 8.19989 8.30411 8.36619 8.57823 8.74802 10.05213 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.008062 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.531094 B = 3472.380766 C = 4884.510611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.012 3.988 4 C -0.157 4.157 5 C -0.167 4.167 6 C 0.072 3.928 7 C -0.448 4.448 8 H 0.092 0.908 9 C 0.085 3.915 10 N -0.809 5.809 11 Si 0.899 3.101 12 H -0.268 1.268 13 H -0.289 1.289 14 H -0.243 1.243 15 C -0.192 4.192 16 C -0.037 4.037 17 C -0.054 4.054 18 C -0.071 4.071 19 C -0.151 4.151 20 C -0.105 4.105 21 C 0.087 3.913 22 N -0.487 5.487 23 C 0.142 3.858 24 C -0.102 4.102 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.285 0.715 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.148 0.852 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -11.853 1.993 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.237 6.237 3 C -0.032 4.032 4 C -0.176 4.176 5 C -0.187 4.187 6 C 0.069 3.931 7 C -0.477 4.477 8 H 0.109 0.891 9 C -0.133 4.133 10 N -0.434 5.434 11 Si 0.725 3.275 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.167 1.167 15 C -0.211 4.211 16 C -0.039 4.039 17 C -0.056 4.056 18 C -0.097 4.097 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.071 4.071 22 N -0.195 5.195 23 C 0.004 3.996 24 C -0.160 4.160 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.165 0.835 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.519 -12.387 1.267 12.704 hybrid contribution 0.275 0.413 1.368 1.455 sum -2.244 -11.974 2.635 12.464 Atomic orbital electron populations 1.22768 0.80690 1.02089 1.00491 1.85915 1.19254 1.27874 1.90695 1.18364 0.90368 0.83396 1.11066 1.20504 0.97938 0.92656 1.06469 1.20703 0.94484 0.95561 1.07915 1.17611 0.91556 0.92736 0.91172 1.19352 1.00774 0.95553 1.31998 0.89051 1.26087 0.95202 0.95762 0.96279 1.69718 1.09874 1.28018 1.35791 0.86496 0.80065 0.80539 0.80387 1.19387 1.21615 1.16659 1.20923 0.98246 0.90624 1.11320 1.17509 0.89052 0.91220 1.06092 1.19647 0.96515 0.95321 0.94144 1.21565 0.94486 0.95697 0.97910 1.20744 1.00220 0.96266 0.98029 1.20663 0.97936 1.01898 0.95744 1.22452 0.96597 0.98821 0.89181 1.67415 1.06757 1.17605 1.27738 1.21304 0.94209 0.89075 0.95003 1.20763 0.98884 1.02025 0.94288 0.89814 0.93772 0.93629 0.87649 0.87628 0.90496 0.87354 0.85398 0.91271 0.91466 0.91598 0.83475 0.91048 0.91457 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 9.80 101.05 0.99 1.48 16 2 O -0.32 -5.91 8.38 -18.52 -0.16 -6.07 16 3 C 0.01 0.24 5.33 -38.44 -0.20 0.03 16 4 C -0.16 -3.11 8.95 -39.90 -0.36 -3.47 16 5 C -0.17 -3.67 9.72 -39.23 -0.38 -4.05 16 6 C 0.07 1.76 5.10 -106.85 -0.55 1.22 16 7 C -0.45 -11.78 9.55 -37.83 -0.36 -12.14 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.09 2.20 5.40 -17.34 -0.09 2.11 16 10 N -0.81 -21.38 13.93 55.54 0.77 -20.60 16 11 Si 0.90 20.40 24.52 -169.99 -4.17 16.23 16 12 H -0.27 -5.97 6.70 56.52 0.38 -5.59 16 13 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.24 -5.58 6.87 56.52 0.39 -5.19 16 15 C -0.19 -4.54 6.85 -38.56 -0.26 -4.80 16 16 C -0.04 -0.81 4.66 -104.80 -0.49 -1.30 16 17 C -0.05 -1.10 4.94 -104.76 -0.52 -1.62 16 18 C -0.07 -1.32 9.57 -38.94 -0.37 -1.69 16 19 C -0.15 -2.36 5.89 -104.53 -0.62 -2.98 16 20 C -0.10 -1.22 10.04 36.01 0.36 -0.85 16 21 C 0.09 1.36 10.85 -17.50 -0.19 1.17 16 22 N -0.49 -8.83 10.26 -9.20 -0.09 -8.93 16 23 C 0.14 2.71 6.60 -82.23 -0.54 2.17 16 24 C -0.10 -1.76 9.61 36.01 0.35 -1.42 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.57 7.64 -51.93 -0.40 0.18 16 27 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 28 H 0.11 1.77 6.26 -52.49 -0.33 1.44 16 29 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 30 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 31 H 0.11 2.63 4.74 -52.48 -0.25 2.38 16 32 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.15 1.80 8.06 -52.48 -0.42 1.37 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.62 4.63 -51.93 -0.24 1.38 16 LS Contribution 320.84 15.07 4.83 4.83 Total: -1.00 -28.48 320.84 -7.05 -35.53 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.00 Total: 5.15 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -3.24 Total: -26.15 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 0.68 Total: -29.53 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.16 Total: -6.07 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.17 Total: 16.23 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.48 -7.05 -35.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239900046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.309 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds