Wall clock time and date at job start Tue Mar 31 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35669 * 116.99928 * 2 1 4 4 C 1.37989 * 120.19598 * 0.23932 * 3 2 1 5 5 C 1.39613 * 119.93088 * 180.22738 * 4 3 2 6 6 C 1.48036 * 119.83494 * 179.76518 * 5 4 3 7 7 C 1.39999 * 120.55643 * 309.73878 * 6 5 4 8 8 C 1.38339 * 118.29348 * 179.78307 * 7 6 5 9 9 C 1.50695 * 120.34862 * 180.24176 * 8 7 6 10 10 C 1.38375 * 119.30489 * 0.49910 * 8 7 6 11 11 N 1.31926 * 121.07880 * 359.74505 * 10 8 7 12 12 C 1.31700 * 121.86865 * 359.97438 * 11 10 8 13 13 C 1.50699 * 119.71256 * 179.97438 * 12 11 10 14 14 C 1.40075 * 120.32749 * 359.78650 * 5 4 3 15 15 C 1.36113 * 120.39436 * 359.97438 * 14 5 4 16 16 C 1.40910 * 120.06041 * 359.97438 * 15 14 5 17 17 C 1.40832 * 120.16651 * 179.97438 * 16 15 14 18 18 H 1.07990 * 120.00520 * 154.55664 * 17 16 15 19 19 C 1.40008 * 119.99365 * 334.55962 * 17 16 15 20 20 N 1.30825 * 120.00164 * 334.51997 * 19 17 16 21 21 Si 1.86807 * 119.99842 * 154.52340 * 19 17 16 22 22 H 1.48499 * 109.47211 * 179.97438 * 21 19 17 23 23 H 1.48506 * 109.46969 * 299.99502 * 21 19 17 24 24 H 1.48501 * 109.47052 * 59.99796 * 21 19 17 25 25 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47340 * 299.99306 * 1 2 3 27 27 H 1.09001 * 109.47154 * 59.99803 * 1 2 3 28 28 H 1.07994 * 120.03359 * 359.97438 * 4 3 2 29 29 H 1.07993 * 120.85544 * 0.02562 * 7 6 5 30 30 H 1.09002 * 109.46940 * 270.25945 * 9 8 7 31 31 H 1.09001 * 109.47312 * 30.26000 * 9 8 7 32 32 H 1.09001 * 109.47447 * 150.26600 * 9 8 7 33 33 H 1.08004 * 119.45973 * 179.76664 * 10 8 7 34 34 H 1.08995 * 109.47376 * 270.02316 * 13 12 11 35 35 H 1.08999 * 109.47567 * 30.02065 * 13 12 11 36 36 H 1.09001 * 109.47184 * 150.02348 * 13 12 11 37 37 H 1.08002 * 119.79982 * 180.02562 * 14 5 4 38 38 H 1.07996 * 119.96990 * 179.97438 * 15 14 5 39 39 H 0.97003 * 120.00595 * 354.16478 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2973 2.3687 0.0050 5 6 1.9369 3.6097 0.0002 6 6 1.1327 4.8526 0.0002 7 6 0.0959 5.0296 -0.9236 8 6 -0.6285 6.2073 -0.8787 9 6 -1.7580 6.4439 -1.8478 10 6 -0.3016 7.1680 0.0619 11 7 0.6844 6.9760 0.9172 12 6 1.3990 5.8698 0.9176 13 6 2.5150 5.7018 1.9163 14 6 3.3356 3.6845 -0.0052 15 6 4.0860 2.5490 -0.0053 16 6 3.4577 1.2877 0.0006 17 6 4.2320 0.1113 0.0000 18 1 3.8253 -0.8030 0.4059 19 6 5.5291 0.1274 -0.5267 20 7 5.8560 1.0120 -1.4335 21 14 6.7930 -1.1142 0.0652 22 1 8.0786 -0.8878 -0.6427 23 1 6.9976 -0.9536 1.5273 24 1 6.3075 -2.4886 -0.2188 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2187 2.3164 0.0085 29 1 -0.1352 4.2647 -1.6501 30 1 -1.3714 6.9268 -2.7454 31 1 -2.2129 5.4902 -2.1156 32 1 -2.5066 7.0860 -1.3837 33 1 -0.8630 8.0900 0.0967 34 1 3.4426 6.0869 1.4929 35 1 2.2747 6.2525 2.8257 36 1 2.6350 4.6445 2.1527 37 1 3.8215 4.6491 -0.0085 38 1 5.1640 2.6147 -0.0099 39 1 5.1794 1.6011 -1.8026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239903339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:36 Heat of formation + Delta-G solvation = -5.588161 kcal Electronic energy + Delta-G solvation = -21574.134334 eV Core-core repulsion = 18445.815062 eV Total energy + Delta-G solvation = -3128.319273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.02300 -38.75218 -36.45762 -34.51626 -33.77379 -31.98843 -29.72886 -29.19114 -28.56204 -26.56987 -25.41215 -25.18708 -22.82786 -21.39882 -20.72663 -20.07746 -18.19648 -16.71249 -16.15426 -15.76068 -15.16317 -14.84096 -14.76271 -14.27780 -14.18493 -13.91331 -13.30749 -13.02003 -12.90131 -12.80407 -12.55650 -12.40511 -12.04737 -12.00405 -11.71721 -11.59526 -11.36576 -11.25517 -11.00310 -10.69084 -10.46105 -10.23526 -10.02318 -9.60978 -9.27381 -9.13088 -9.00281 -8.37542 -7.61874 -7.47204 -7.09590 -4.43944 1.37057 1.62427 2.60201 2.77808 3.11175 3.19222 3.31640 3.93200 4.10350 4.35064 4.43108 4.68780 5.03223 5.08623 5.25221 5.28466 5.34928 5.57785 5.58720 5.66249 5.69713 5.80476 5.82644 5.95648 5.96267 6.00729 6.04280 6.19450 6.23453 6.45345 6.56202 6.62944 6.69381 6.89063 7.01374 7.13207 7.33067 7.49494 7.63037 7.78742 7.93049 8.07284 8.24018 8.38695 8.66514 8.82253 9.89420 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.004696 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.605231 B = 5960.570472 C = 6672.783788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.006 3.994 4 C -0.140 4.140 5 C -0.186 4.186 6 C -0.029 4.029 7 C -0.088 4.088 8 C -0.145 4.145 9 C -0.104 4.104 10 C 0.069 3.931 11 N -0.482 5.482 12 C 0.110 3.890 13 C -0.098 4.098 14 C -0.069 4.069 15 C -0.213 4.213 16 C 0.093 3.907 17 C -0.485 4.485 18 H 0.084 0.916 19 C 0.036 3.964 20 N -0.784 5.784 21 Si 1.066 2.934 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.274 1.274 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.145 0.855 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 4.565 0.690 9.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.226 6.226 3 C -0.038 4.038 4 C -0.160 4.160 5 C -0.188 4.188 6 C -0.031 4.031 7 C -0.114 4.114 8 C -0.146 4.146 9 C -0.162 4.162 10 C -0.088 4.088 11 N -0.191 5.191 12 C -0.028 4.028 13 C -0.155 4.155 14 C -0.088 4.088 15 C -0.232 4.232 16 C 0.089 3.911 17 C -0.512 4.512 18 H 0.102 0.898 19 C -0.187 4.187 20 N -0.406 5.406 21 Si 0.889 3.111 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.199 1.199 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.145 0.855 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.353 4.615 1.100 7.929 hybrid contribution -2.302 0.090 -0.624 2.386 sum -8.655 4.704 0.477 9.862 Atomic orbital electron populations 1.22743 0.81562 1.01902 0.99934 1.85970 1.18314 1.27972 1.90348 1.18967 0.92090 0.82679 1.10082 1.20596 0.97177 0.91783 1.06403 1.17476 0.92062 0.89483 1.19752 1.19752 0.94679 0.94827 0.93845 1.21596 0.95247 0.96634 0.97912 1.20754 0.99065 0.95708 0.99121 1.20655 0.95635 1.02220 0.97674 1.22380 0.95328 0.98510 0.92588 1.67342 1.05874 1.22381 1.23461 1.21411 0.96417 0.89302 0.95627 1.20726 0.94836 1.03493 0.96447 1.20329 0.92179 0.97064 0.99222 1.20572 0.98870 0.91143 1.12627 1.17162 0.88084 0.93770 0.92074 1.20563 0.99423 0.97451 1.33771 0.89777 1.27164 0.99141 0.99303 0.93121 1.70460 1.40007 1.13895 1.16235 0.83616 0.75258 0.74924 0.77291 1.19731 1.19776 1.19940 0.89848 0.94190 0.94190 0.88454 0.85547 0.91370 0.91726 0.91647 0.83800 0.91025 0.91676 0.89750 0.88777 0.86852 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.01 9.78 -18.71 -0.18 -7.20 16 3 C 0.01 0.14 6.71 -38.43 -0.26 -0.12 16 4 C -0.14 -3.04 8.51 -39.16 -0.33 -3.37 16 5 C -0.19 -3.93 4.76 -104.68 -0.50 -4.43 16 6 C -0.03 -0.56 5.47 -104.73 -0.57 -1.13 16 7 C -0.09 -1.50 9.35 -38.88 -0.36 -1.86 16 8 C -0.14 -2.12 5.89 -104.54 -0.62 -2.73 16 9 C -0.10 -1.11 10.03 36.00 0.36 -0.75 16 10 C 0.07 1.05 10.85 -17.46 -0.19 0.86 16 11 N -0.48 -8.53 10.26 -9.13 -0.09 -8.62 16 12 C 0.11 2.03 6.79 -82.16 -0.56 1.48 16 13 C -0.10 -1.63 8.62 36.00 0.31 -1.32 16 14 C -0.07 -1.52 7.83 -39.66 -0.31 -1.83 16 15 C -0.21 -5.13 7.87 -39.33 -0.31 -5.44 16 16 C 0.09 2.36 5.31 -106.66 -0.57 1.80 16 17 C -0.49 -12.51 8.63 -37.94 -0.33 -12.83 16 18 H 0.08 2.18 7.71 -52.49 -0.40 1.77 16 19 C 0.04 0.87 4.93 -17.32 -0.09 0.78 16 20 N -0.78 -19.90 12.30 55.55 0.68 -19.22 16 21 Si 1.07 20.73 30.00 -169.99 -5.10 15.63 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 24 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 27 H 0.04 0.62 7.67 -51.93 -0.40 0.23 16 28 H 0.10 1.90 6.28 -52.49 -0.33 1.57 16 29 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.07 1.13 7.49 -51.93 -0.39 0.74 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.50 6.46 -51.93 -0.34 1.16 16 37 H 0.09 1.90 6.83 -52.49 -0.36 1.54 16 38 H 0.11 2.80 6.47 -52.49 -0.34 2.47 16 39 H 0.30 7.87 6.69 -40.82 -0.27 7.60 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -27.89 325.02 -8.10 -35.98 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.98 Total: 7.87 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -3.33 Total: -29.34 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.59 Total: -27.84 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.18 Total: -7.20 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.10 Total: 15.63 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.89 -8.10 -35.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239903339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.396 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds