Wall clock time and date at job start Tue Mar 31 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35669 * 116.99928 * 2 1 4 4 C 1.37989 * 120.19598 * 0.23932 * 3 2 1 5 5 C 1.39613 * 119.93088 * 180.22738 * 4 3 2 6 6 C 1.48036 * 119.83494 * 179.76518 * 5 4 3 7 7 C 1.39999 * 120.55643 * 309.73878 * 6 5 4 8 8 C 1.38339 * 118.29348 * 179.78307 * 7 6 5 9 9 C 1.50695 * 120.34862 * 180.24176 * 8 7 6 10 10 C 1.38375 * 119.30489 * 0.49910 * 8 7 6 11 11 N 1.31926 * 121.07880 * 359.74505 * 10 8 7 12 12 C 1.31700 * 121.86865 * 359.97438 * 11 10 8 13 13 C 1.50699 * 119.71256 * 179.97438 * 12 11 10 14 14 C 1.40075 * 120.32749 * 359.78650 * 5 4 3 15 15 C 1.36113 * 120.39436 * 359.97438 * 14 5 4 16 16 C 1.40910 * 120.06041 * 359.97438 * 15 14 5 17 17 C 1.40832 * 120.16651 * 179.97438 * 16 15 14 18 18 H 1.07990 * 120.00520 * 154.55664 * 17 16 15 19 19 C 1.40008 * 119.99365 * 334.55962 * 17 16 15 20 20 N 1.30825 * 120.00164 * 334.51997 * 19 17 16 21 21 Si 1.86807 * 119.99842 * 154.52340 * 19 17 16 22 22 H 1.48499 * 109.47211 * 179.97438 * 21 19 17 23 23 H 1.48506 * 109.46969 * 299.99502 * 21 19 17 24 24 H 1.48501 * 109.47052 * 59.99796 * 21 19 17 25 25 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47340 * 299.99306 * 1 2 3 27 27 H 1.09001 * 109.47154 * 59.99803 * 1 2 3 28 28 H 1.07994 * 120.03359 * 359.97438 * 4 3 2 29 29 H 1.07993 * 120.85544 * 0.02562 * 7 6 5 30 30 H 1.09002 * 109.46940 * 270.25945 * 9 8 7 31 31 H 1.09001 * 109.47312 * 30.26000 * 9 8 7 32 32 H 1.09001 * 109.47447 * 150.26600 * 9 8 7 33 33 H 1.08004 * 119.45973 * 179.76664 * 10 8 7 34 34 H 1.08995 * 109.47376 * 270.02316 * 13 12 11 35 35 H 1.08999 * 109.47567 * 30.02065 * 13 12 11 36 36 H 1.09001 * 109.47184 * 150.02348 * 13 12 11 37 37 H 1.08002 * 119.79982 * 180.02562 * 14 5 4 38 38 H 1.07996 * 119.96990 * 179.97438 * 15 14 5 39 39 H 0.97003 * 120.00595 * 354.16478 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2973 2.3687 0.0050 5 6 1.9369 3.6097 0.0002 6 6 1.1327 4.8526 0.0002 7 6 0.0959 5.0296 -0.9236 8 6 -0.6285 6.2073 -0.8787 9 6 -1.7580 6.4439 -1.8478 10 6 -0.3016 7.1680 0.0619 11 7 0.6844 6.9760 0.9172 12 6 1.3990 5.8698 0.9176 13 6 2.5150 5.7018 1.9163 14 6 3.3356 3.6845 -0.0052 15 6 4.0860 2.5490 -0.0053 16 6 3.4577 1.2877 0.0006 17 6 4.2320 0.1113 0.0000 18 1 3.8253 -0.8030 0.4059 19 6 5.5291 0.1274 -0.5267 20 7 5.8560 1.0120 -1.4335 21 14 6.7930 -1.1142 0.0652 22 1 8.0786 -0.8878 -0.6427 23 1 6.9976 -0.9536 1.5273 24 1 6.3075 -2.4886 -0.2188 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2187 2.3164 0.0085 29 1 -0.1352 4.2647 -1.6501 30 1 -1.3714 6.9268 -2.7454 31 1 -2.2129 5.4902 -2.1156 32 1 -2.5066 7.0860 -1.3837 33 1 -0.8630 8.0900 0.0967 34 1 3.4426 6.0869 1.4929 35 1 2.2747 6.2525 2.8257 36 1 2.6350 4.6445 2.1527 37 1 3.8215 4.6491 -0.0085 38 1 5.1640 2.6147 -0.0099 39 1 5.1794 1.6011 -1.8026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239903339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:35 Heat of formation + Delta-G solvation = -19.689566 kcal Electronic energy + Delta-G solvation = -21574.745817 eV Core-core repulsion = 18445.815062 eV Total energy + Delta-G solvation = -3128.930756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41909 -40.41228 -38.15623 -36.19990 -35.01955 -33.54377 -31.18305 -30.87706 -30.03213 -28.04339 -27.04809 -26.37701 -24.34645 -22.91349 -22.44541 -21.56421 -20.00598 -18.28488 -17.52913 -17.07613 -16.76678 -16.59189 -16.33616 -15.79207 -15.50276 -15.42418 -14.82079 -14.50587 -14.15349 -14.12738 -13.98599 -13.71206 -13.50239 -13.38664 -12.98443 -12.96027 -12.90819 -12.72262 -12.44573 -12.28623 -11.95113 -11.87730 -11.70832 -11.32025 -10.91729 -10.62554 -10.39358 -9.78641 -9.36349 -9.25724 -8.88468 -6.33837 -0.00690 0.29960 0.88176 0.96338 1.51742 1.63445 1.81269 2.32724 2.58496 2.78295 2.85600 3.44033 3.44285 3.82644 3.94444 3.96040 4.12191 4.16284 4.33380 4.36639 4.39075 4.42310 4.65805 4.66126 4.70284 4.72924 4.79544 4.83350 4.96199 5.04868 5.08871 5.19788 5.23705 5.31891 5.37227 5.47387 5.65613 5.74884 5.88555 5.95731 6.09220 6.25776 6.44897 6.82933 7.05090 7.08495 8.00329 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.004696 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.605231 B = 5960.570472 C = 6672.783788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C -0.004 4.004 4 C -0.144 4.144 5 C -0.160 4.160 6 C -0.062 4.062 7 C -0.092 4.092 8 C -0.136 4.136 9 C -0.103 4.103 10 C 0.075 3.925 11 N -0.498 5.498 12 C 0.100 3.900 13 C -0.095 4.095 14 C -0.078 4.078 15 C -0.218 4.218 16 C 0.060 3.940 17 C -0.528 4.528 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.809 5.809 21 Si 1.115 2.885 22 H -0.269 1.269 23 H -0.263 1.263 24 H -0.260 1.260 25 H 0.114 0.886 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 6.269 0.594 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C -0.048 4.048 4 C -0.163 4.163 5 C -0.162 4.162 6 C -0.064 4.064 7 C -0.118 4.118 8 C -0.138 4.138 9 C -0.160 4.160 10 C -0.083 4.083 11 N -0.207 5.207 12 C -0.037 4.037 13 C -0.152 4.152 14 C -0.096 4.096 15 C -0.238 4.238 16 C 0.057 3.943 17 C -0.555 4.555 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.432 5.432 21 Si 0.932 3.068 22 H -0.193 1.193 23 H -0.187 1.187 24 H -0.185 1.185 25 H 0.132 0.868 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.139 0.861 29 H 0.151 0.849 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.199 0.801 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.918 6.323 1.009 10.979 hybrid contribution -1.902 -0.141 -0.596 1.998 sum -10.820 6.182 0.412 12.468 Atomic orbital electron populations 1.23087 0.78556 1.04358 1.00834 1.85924 1.21492 1.27623 1.90298 1.19148 0.92000 0.83934 1.09758 1.20844 0.98324 0.91219 1.05957 1.17797 0.91974 0.90647 1.15753 1.19706 0.96235 0.94383 0.96093 1.21793 0.94593 0.97934 0.97448 1.21165 0.99260 0.94178 0.99172 1.20754 0.94591 1.03429 0.97193 1.23117 0.94184 0.99721 0.91230 1.67415 1.06749 1.21957 1.24528 1.21514 0.96915 0.89429 0.95880 1.20685 0.94967 1.02556 0.97010 1.20477 0.92806 0.96935 0.99382 1.20529 0.98387 0.91761 1.13120 1.17501 0.89442 0.94237 0.93149 1.20572 1.00970 0.97270 1.36712 0.91208 1.28441 1.00571 1.00109 0.92052 1.70574 1.39261 1.15459 1.17900 0.83029 0.73100 0.73374 0.77284 1.19324 1.18731 1.18480 0.86815 0.93192 0.93107 0.86085 0.84901 0.90008 0.90958 0.89188 0.80089 0.90461 0.90221 0.91504 0.87329 0.88371 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.81 113.37 1.11 1.96 16 2 O -0.34 -15.48 9.78 -89.86 -0.88 -16.36 16 3 C 0.00 -0.20 6.71 23.02 0.15 -0.05 16 4 C -0.14 -6.23 8.51 22.54 0.19 -6.04 16 5 C -0.16 -6.75 4.76 -19.90 -0.09 -6.84 16 6 C -0.06 -2.29 5.47 -19.94 -0.11 -2.39 16 7 C -0.09 -2.88 9.35 22.72 0.21 -2.67 16 8 C -0.14 -3.43 5.89 -19.81 -0.12 -3.55 16 9 C -0.10 -1.66 10.03 71.23 0.71 -0.95 16 10 C 0.07 1.97 10.85 84.71 0.92 2.89 16 11 N -0.50 -16.20 10.26 -182.81 -1.88 -18.07 16 12 C 0.10 3.51 6.79 42.89 0.29 3.80 16 13 C -0.09 -3.10 8.62 71.24 0.61 -2.49 16 14 C -0.08 -3.49 7.83 22.22 0.17 -3.31 16 15 C -0.22 -11.11 7.87 22.43 0.18 -10.93 16 16 C 0.06 3.21 5.31 -21.19 -0.11 3.10 16 17 C -0.53 -28.83 8.63 23.33 0.20 -28.63 16 18 H 0.07 3.85 7.71 -2.92 -0.02 3.83 16 19 C 0.00 0.25 4.93 85.27 0.42 0.68 16 20 N -0.81 -43.38 12.30 21.84 0.27 -43.11 16 21 Si 1.12 43.20 30.00 68.60 2.06 45.25 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 24 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 25 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 26 H 0.05 1.48 7.65 -2.39 -0.02 1.46 16 27 H 0.05 1.50 7.67 -2.39 -0.02 1.48 16 28 H 0.12 4.55 6.28 -2.91 -0.02 4.53 16 29 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 32 H 0.09 1.07 8.09 -2.39 -0.02 1.05 16 33 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.08 2.39 7.49 -2.39 -0.02 2.37 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.39 6.46 -2.39 -0.02 2.38 16 37 H 0.11 4.46 6.83 -2.91 -0.02 4.44 16 38 H 0.10 5.20 6.47 -2.91 -0.02 5.18 16 39 H 0.28 15.89 6.69 -92.71 -0.62 15.27 16 Total: -1.00 -63.62 325.02 5.53 -58.10 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 1.21 Total: 29.61 kcal Atomic # 6 Polarization: -60.17 SS G_CDS: 4.75 Total: -55.42 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -1.61 Total: -61.18 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.88 Total: -16.36 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.06 Total: 45.25 kcal Total: -63.62 5.53 -58.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239903339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.406 kcal (2) G-P(sol) polarization free energy of solvation -63.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds