Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38319 * 120.35533 * 2 1 4 4 N 1.31894 * 121.02980 * 179.97438 * 3 2 1 5 5 C 1.31748 * 121.85261 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.70085 * 179.97438 * 5 4 3 7 7 C 1.39319 * 120.59541 * 359.97438 * 5 4 3 8 8 C 1.48358 * 120.53664 * 180.02562 * 7 5 4 9 9 C 1.39371 * 120.06814 * 235.75807 * 8 7 5 10 10 C 1.37909 * 119.93776 * 179.77278 * 9 8 7 11 11 C 1.38831 * 120.06295 * 0.52572 * 10 9 8 12 12 O 1.35873 * 119.93352 * 179.72564 * 11 10 9 13 13 C 1.42893 * 116.99955 * 359.97438 * 12 11 10 14 14 C 1.50703 * 109.47150 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99674 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00064 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99586 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00189 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47170 * 89.99812 * 18 16 14 20 20 H 1.48505 * 109.47374 * 210.00123 * 18 16 14 21 21 H 1.48505 * 109.47075 * 329.99965 * 18 16 14 22 22 C 1.38837 * 120.12981 * 359.70238 * 11 10 9 23 23 C 1.37903 * 120.06396 * 0.04431 * 22 11 10 24 24 C 1.38404 * 120.36159 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47441 * 89.99813 * 1 2 3 26 26 H 1.09004 * 109.47349 * 209.99641 * 1 2 3 27 27 H 1.09005 * 109.47130 * 329.99090 * 1 2 3 28 28 H 1.08000 * 119.48650 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.46836 * 95.35842 * 6 5 4 30 30 H 1.08997 * 109.46927 * 215.36588 * 6 5 4 31 31 H 1.09006 * 109.46657 * 335.36411 * 6 5 4 32 32 H 1.08007 * 120.02850 * 359.97438 * 9 8 7 33 33 H 1.08002 * 119.96832 * 180.23113 * 10 9 8 34 34 H 1.08999 * 109.47249 * 299.99804 * 13 12 11 35 35 H 1.08998 * 109.47730 * 59.99979 * 13 12 11 36 36 H 0.96995 * 119.99228 * 180.02562 * 17 16 14 37 37 H 1.07997 * 119.96404 * 180.02562 * 22 11 10 38 38 H 1.08000 * 120.02878 * 179.97438 * 23 22 11 39 39 H 1.08003 * 120.83981 * 0.03495 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1936 0.0000 4 7 3.5248 1.2091 0.0005 5 6 4.2332 0.0983 0.0015 6 6 5.7384 0.1726 0.0015 7 6 3.6034 -1.1444 0.0027 8 6 4.4024 -2.3945 0.0044 9 6 4.2070 -3.3495 -0.9917 10 6 4.9545 -4.5084 -0.9902 11 6 5.8932 -4.7292 0.0085 12 8 6.6243 -5.8745 0.0106 13 6 6.3740 -6.8058 -1.0438 14 6 7.2713 -8.0052 -0.8782 15 1 7.9632 -8.0517 -0.0502 16 6 7.2082 -9.0436 -1.7831 17 7 7.9910 -10.0905 -1.6382 18 14 6.0111 -8.9634 -3.2147 19 1 6.6725 -8.3189 -4.3776 20 1 5.5891 -10.3383 -3.5847 21 1 4.8199 -8.1694 -2.8200 22 6 6.0868 -3.7818 1.0048 23 6 5.3459 -2.6187 1.0055 24 6 2.2065 -1.1942 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5140 28 1 1.6634 2.1274 -0.0004 29 1 6.1059 0.0956 1.0247 30 1 6.1426 -0.6470 -0.5926 31 1 6.0552 1.1232 -0.4278 32 1 3.4731 -3.1805 -1.7660 33 1 4.8061 -5.2471 -1.7640 34 1 5.3320 -7.1235 -1.0082 35 1 6.5765 -6.3309 -2.0038 36 1 7.9468 -10.8208 -2.2750 37 1 6.8180 -3.9562 1.7802 38 1 5.4966 -1.8824 1.7810 39 1 1.6862 -2.1407 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239906439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = 5.955208 kcal Electronic energy + Delta-G solvation = -20714.778150 eV Core-core repulsion = 17586.959436 eV Total energy + Delta-G solvation = -3127.818715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66262 -39.41838 -37.04631 -34.35871 -33.17918 -32.68166 -31.00056 -29.79318 -29.15227 -27.87743 -25.70118 -23.89222 -23.34941 -21.86711 -21.55540 -20.44821 -17.89822 -16.89154 -16.69696 -16.27815 -15.90409 -15.44564 -14.92698 -14.75766 -14.36462 -14.10915 -13.63256 -13.55072 -13.24065 -13.20149 -12.95479 -12.79553 -12.58366 -12.39712 -12.25254 -12.11019 -12.01389 -11.43432 -11.18793 -11.11033 -10.74250 -10.35497 -10.04830 -9.75093 -9.58727 -9.41126 -8.86047 -8.84288 -8.76239 -7.60463 -6.28914 -4.31321 0.79268 1.09589 1.55291 1.74734 3.13103 3.19272 3.20892 3.57286 3.96895 4.06580 4.16950 4.19572 4.51014 4.61398 4.70878 4.82610 4.99029 5.01515 5.06579 5.10800 5.27792 5.36075 5.46471 5.50207 5.54592 5.59903 5.68371 5.70825 5.85669 5.99920 6.05489 6.08538 6.20470 6.25637 6.40644 6.64024 6.65214 6.66618 6.68440 6.99812 7.32347 7.86348 7.91966 8.44431 8.80351 9.26663 10.83417 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027929 B = 0.003339 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.299812 B = 8384.671833 C = 8980.110938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.145 4.145 3 C 0.093 3.907 4 N -0.481 5.481 5 C 0.129 3.871 6 C -0.104 4.104 7 C -0.070 4.070 8 C -0.113 4.113 9 C -0.059 4.059 10 C -0.216 4.216 11 C 0.159 3.841 12 O -0.300 6.300 13 C 0.167 3.833 14 C -0.531 4.531 15 H 0.087 0.913 16 C 0.078 3.922 17 N -0.887 5.887 18 Si 0.873 3.127 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.164 4.164 23 C -0.061 4.061 24 C -0.068 4.068 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.152 0.848 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.020 0.980 35 H 0.015 0.985 36 H 0.270 0.730 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.050 20.455 2.412 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C -0.064 4.064 4 N -0.190 5.190 5 C -0.008 4.008 6 C -0.162 4.162 7 C -0.072 4.072 8 C -0.114 4.114 9 C -0.078 4.078 10 C -0.234 4.234 11 C 0.111 3.889 12 O -0.212 6.212 13 C 0.093 3.907 14 C -0.568 4.568 15 H 0.105 0.895 16 C -0.125 4.125 17 N -0.524 5.524 18 Si 0.699 3.301 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.182 4.182 23 C -0.079 4.079 24 C -0.094 4.094 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.169 0.831 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.388 20.973 2.457 24.482 hybrid contribution -1.260 -1.018 -1.050 1.931 sum -13.648 19.955 1.407 24.216 Atomic orbital electron populations 1.20700 0.90273 1.03040 1.02521 1.20833 0.97479 0.94034 1.02308 1.22597 0.89776 0.97300 0.96775 1.67471 1.07957 1.30979 1.12562 1.21407 0.96924 0.87350 0.95159 1.20773 0.88659 1.03599 1.03119 1.19590 0.93211 0.93495 1.00947 1.18260 1.00423 0.94167 0.98572 1.20872 0.97731 0.92223 0.96937 1.21325 1.00503 1.00049 1.01566 1.19421 0.89460 0.87205 0.92863 1.86171 1.57755 1.26051 1.51206 1.21034 0.97530 0.87380 0.84706 1.20768 1.22056 0.99849 1.14141 0.89517 1.24705 0.95593 0.94734 0.97463 1.69851 1.37980 1.07718 1.36842 0.86891 0.81831 0.78291 0.83069 1.19571 1.20367 1.18976 1.20376 1.03820 0.93846 1.00207 1.20856 0.93895 0.96102 0.97012 1.21602 0.93017 0.98262 0.96521 0.91005 0.91337 0.91267 0.83085 0.90395 0.90095 0.90771 0.86325 0.85127 0.96264 0.96697 0.91987 0.85045 0.85815 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.03 36.00 0.36 -0.34 16 2 C -0.14 -1.39 5.89 -104.53 -0.62 -2.01 16 3 C 0.09 0.96 10.85 -17.50 -0.19 0.77 16 4 N -0.48 -6.02 10.26 -9.20 -0.09 -6.12 16 5 C 0.13 1.60 6.79 -82.23 -0.56 1.04 16 6 C -0.10 -1.11 8.72 36.01 0.31 -0.80 16 7 C -0.07 -0.87 5.41 -104.76 -0.57 -1.44 16 8 C -0.11 -1.52 4.53 -104.88 -0.48 -2.00 16 9 C -0.06 -0.85 9.62 -39.28 -0.38 -1.23 16 10 C -0.22 -3.66 9.02 -39.48 -0.36 -4.02 16 11 C 0.16 2.97 6.69 -39.14 -0.26 2.71 16 12 O -0.30 -6.84 10.12 -19.34 -0.20 -7.03 16 13 C 0.17 4.04 3.56 36.01 0.13 4.17 16 14 C -0.53 -15.13 9.99 -34.44 -0.34 -15.47 16 15 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 17 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 18 Si 0.87 20.34 27.47 -169.99 -4.67 15.67 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 22 C -0.16 -2.56 9.97 -39.48 -0.39 -2.96 16 23 C -0.06 -0.81 8.29 -39.28 -0.33 -1.13 16 24 C -0.07 -0.75 9.45 -38.95 -0.37 -1.12 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 28 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.08 0.73 7.56 -51.93 -0.39 0.34 16 30 H 0.08 0.90 7.01 -51.93 -0.36 0.53 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.13 2.26 6.28 -52.49 -0.33 1.93 16 34 H 0.02 0.46 6.71 -51.93 -0.35 0.11 16 35 H 0.02 0.35 7.08 -51.93 -0.37 -0.01 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.12 1.37 7.32 -52.49 -0.38 0.99 16 39 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -30.93 329.88 -8.50 -39.43 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.15 Total: 0.41 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -4.13 Total: -21.70 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.68 Total: -31.74 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.20 Total: -7.03 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.93 -8.50 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239906439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.386 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds