Wall clock time and date at job start Tue Mar 31 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35865 * 116.99978 * 2 1 4 4 C 1.39463 * 119.78545 * 359.97438 * 3 2 1 5 5 C 1.37952 * 120.61910 * 180.02562 * 4 3 2 6 6 C 1.39159 * 120.16848 * 359.96961 * 5 4 3 7 7 C 1.47845 * 120.22077 * 180.02562 * 6 5 4 8 8 C 1.40080 * 120.56790 * 65.00008 * 7 6 5 9 9 C 1.38309 * 118.28495 * 180.02562 * 8 7 6 10 10 C 1.50701 * 120.34105 * 180.02562 * 9 8 7 11 11 C 1.38391 * 119.31736 * 0.28051 * 9 8 7 12 12 N 1.31929 * 121.09693 * 359.44265 * 11 9 8 13 13 C 1.31684 * 121.87830 * 0.54936 * 12 11 9 14 14 C 1.50704 * 119.72167 * 179.72631 * 13 12 11 15 15 C 1.41899 * 119.56144 * 0.28062 * 6 5 4 16 16 C 1.40894 * 120.30162 * 179.69870 * 15 6 5 17 17 H 1.08003 * 119.99765 * 24.70817 * 16 15 6 18 18 C 1.40048 * 119.99870 * 204.71604 * 16 15 6 19 19 N 1.30783 * 120.00276 * 17.49668 * 18 16 15 20 20 Si 1.86801 * 119.99718 * 197.49460 * 18 16 15 21 21 H 1.48503 * 109.46869 * 90.00042 * 20 18 16 22 22 H 1.48494 * 109.47524 * 209.99858 * 20 18 16 23 23 H 1.48495 * 109.47198 * 330.00341 * 20 18 16 24 24 C 1.37933 * 119.77935 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47149 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47552 * 300.00660 * 1 2 3 27 27 H 1.09004 * 109.47108 * 60.00127 * 1 2 3 28 28 H 1.08000 * 119.68343 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.91532 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.85481 * 0.04474 * 8 7 6 31 31 H 1.09000 * 109.47446 * 90.00563 * 10 9 8 32 32 H 1.09004 * 109.47286 * 210.00439 * 10 9 8 33 33 H 1.09000 * 109.47107 * 330.00358 * 10 9 8 34 34 H 1.08003 * 119.44759 * 179.72396 * 11 9 8 35 35 H 1.08997 * 109.46979 * 270.02150 * 14 13 12 36 36 H 1.09003 * 109.47186 * 30.02041 * 14 13 12 37 37 H 1.08995 * 109.47452 * 150.01970 * 14 13 12 38 38 H 0.96996 * 119.99506 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.09489 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2818 2.3774 -0.0005 5 6 1.8902 3.6155 -0.0011 6 6 3.2784 3.7126 -0.0005 7 6 3.9315 5.0390 -0.0005 8 6 3.7885 5.9035 1.0924 9 6 4.4195 7.1333 1.0422 10 6 4.2971 8.0992 2.1925 11 6 5.1600 7.4697 -0.0774 12 7 5.2820 6.6333 -1.0903 13 6 4.7011 5.4515 -1.0902 14 6 4.8679 4.5368 -2.2762 15 6 4.0629 2.5302 -0.0053 16 6 5.4695 2.6104 -0.0111 17 1 5.9619 3.4890 0.3789 18 6 6.2292 1.5510 -0.5228 19 7 5.6675 0.6560 -1.2936 20 14 8.0447 1.4161 -0.1045 21 1 8.2093 0.6099 1.1317 22 1 8.7632 0.7571 -1.2245 23 1 8.6050 2.7742 0.1120 24 6 3.4235 1.2775 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.2039 2.3108 -0.0014 29 1 1.2875 4.5117 -0.0019 30 1 3.2008 5.6171 1.9521 31 1 5.1034 7.9210 2.9040 32 1 4.3624 9.1207 1.8178 33 1 3.3370 7.9546 2.6878 34 1 5.6500 8.4313 -0.1207 35 1 4.0725 4.7273 -2.9967 36 1 5.8346 4.7219 -2.7447 37 1 4.8174 3.4996 -1.9451 38 1 6.1936 -0.0779 -1.6476 39 1 4.0097 0.3704 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239906945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:31 Heat of formation + Delta-G solvation = 0.169921 kcal Electronic energy + Delta-G solvation = -21984.045556 eV Core-core repulsion = 18855.975972 eV Total energy + Delta-G solvation = -3128.069584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.73609 -38.66516 -36.52990 -33.76196 -33.50652 -32.01403 -29.88726 -28.93715 -28.41005 -26.38209 -25.33928 -24.80690 -22.87428 -21.05675 -20.99592 -19.51484 -17.78285 -16.21838 -16.04347 -15.44205 -15.24994 -14.92104 -14.85487 -14.74631 -13.91164 -13.29561 -13.00293 -12.84842 -12.69713 -12.47224 -12.38105 -12.12946 -11.98305 -11.58362 -11.45920 -11.36421 -11.25981 -11.16270 -11.05575 -10.84883 -10.48319 -10.02296 -9.96043 -9.66924 -9.21680 -8.88435 -8.74227 -7.90060 -7.57322 -7.01982 -6.73570 -4.52649 1.75845 1.96374 2.68187 2.88796 3.03411 3.07617 3.14974 3.85380 4.25765 4.42854 4.50141 5.02998 5.26282 5.32793 5.45884 5.59505 5.61877 5.67260 5.70737 5.78248 5.86018 5.91459 6.02220 6.06343 6.28266 6.38387 6.41702 6.52510 6.61779 6.74461 6.86437 6.91291 7.02034 7.16576 7.21329 7.32266 7.52076 7.60268 7.71488 7.88644 7.94293 8.27214 8.64381 8.71394 8.73011 8.81516 10.01022 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.007771 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.742319 B = 3602.362749 C = 5285.783436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.135 3.865 4 C -0.317 4.317 5 C -0.039 4.039 6 C -0.205 4.205 7 C -0.019 4.019 8 C -0.086 4.086 9 C -0.155 4.155 10 C -0.101 4.101 11 C 0.072 3.928 12 N -0.491 5.491 13 C 0.141 3.859 14 C -0.111 4.111 15 C 0.156 3.844 16 C -0.442 4.442 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.774 5.774 20 Si 0.903 3.097 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.195 4.195 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.141 0.859 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.118 0.882 38 H 0.285 0.715 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.352 4.925 2.901 6.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.091 3.909 4 C -0.337 4.337 5 C -0.057 4.057 6 C -0.207 4.207 7 C -0.021 4.021 8 C -0.111 4.111 9 C -0.157 4.157 10 C -0.159 4.159 11 C -0.084 4.084 12 N -0.199 5.199 13 C 0.003 3.997 14 C -0.168 4.168 15 C 0.153 3.847 16 C -0.470 4.470 17 H 0.099 0.901 18 C -0.142 4.142 19 N -0.397 5.397 20 Si 0.727 3.273 21 H -0.191 1.191 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.215 4.215 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.158 0.842 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.136 0.864 38 H 0.096 0.904 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.703 4.774 2.010 5.843 hybrid contribution -0.008 -0.129 0.905 0.915 sum -2.712 4.645 2.915 6.118 Atomic orbital electron populations 1.22762 0.80724 1.01895 1.00534 1.86005 1.19543 1.29091 1.89713 1.18994 0.92455 0.82472 0.96982 1.20336 0.97350 0.92409 1.23608 1.20269 0.93095 0.95254 0.97085 1.18325 0.92010 0.90523 1.19820 1.19564 0.95759 0.94023 0.92790 1.21617 0.98721 0.92848 0.97933 1.20674 1.00836 0.96521 0.97706 1.20617 1.01970 0.97401 0.95899 1.22353 0.97818 0.98595 0.89676 1.67387 1.20635 1.03966 1.27962 1.21539 0.92061 0.90588 0.95478 1.20981 1.00656 1.01417 0.93728 1.17140 0.92577 0.88738 0.86249 1.19469 0.90920 1.02147 1.34454 0.90080 1.25948 1.01304 0.94338 0.92603 1.69803 1.38705 1.10437 1.20767 0.86355 0.81752 0.79902 0.79255 1.19070 1.20005 1.18382 1.20533 0.89373 0.99062 1.12524 0.89898 0.93704 0.93623 0.88557 0.89083 0.85765 0.91626 0.91937 0.91946 0.84201 0.92360 0.92270 0.86404 0.90371 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.33 -7.03 10.48 -19.32 -0.20 -7.23 16 3 C 0.13 3.15 6.67 -39.24 -0.26 2.88 16 4 C -0.32 -6.83 9.02 -39.23 -0.35 -7.19 16 5 C -0.04 -0.83 9.72 -39.34 -0.38 -1.22 16 6 C -0.20 -4.70 4.70 -104.22 -0.49 -5.19 16 7 C -0.02 -0.42 4.38 -104.75 -0.46 -0.87 16 8 C -0.09 -1.61 9.58 -38.86 -0.37 -1.98 16 9 C -0.16 -2.57 5.89 -104.54 -0.62 -3.19 16 10 C -0.10 -1.23 10.03 36.01 0.36 -0.87 16 11 C 0.07 1.26 10.85 -17.45 -0.19 1.08 16 12 N -0.49 -10.03 10.26 -9.11 -0.09 -10.13 16 13 C 0.14 3.05 6.23 -82.13 -0.51 2.53 16 14 C -0.11 -2.36 9.44 36.01 0.34 -2.02 16 15 C 0.16 3.87 4.55 -106.58 -0.48 3.39 16 16 C -0.44 -10.91 6.14 -37.90 -0.23 -11.14 16 17 H 0.08 2.05 7.05 -52.48 -0.37 1.68 16 18 C 0.08 1.86 5.14 -17.32 -0.09 1.78 16 19 N -0.77 -18.77 10.96 55.55 0.61 -18.16 16 20 Si 0.90 18.25 29.59 -169.99 -5.03 13.22 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.19 -4.93 8.61 -38.78 -0.33 -5.26 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 27 H 0.05 0.68 7.64 -51.93 -0.40 0.28 16 28 H 0.10 1.83 6.25 -52.49 -0.33 1.50 16 29 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 33 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.12 2.80 4.31 -51.93 -0.22 2.58 16 38 H 0.29 6.33 8.29 -40.82 -0.34 6.00 16 39 H 0.13 3.40 6.17 -52.49 -0.32 3.08 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -27.18 323.65 -7.90 -35.08 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.97 Total: 8.05 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -3.08 Total: -25.70 kcal Atomic # 7 Polarization: -28.80 SS G_CDS: 0.52 Total: -28.28 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.20 Total: -7.23 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.18 -7.90 -35.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239906945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.246 kcal (2) G-P(sol) polarization free energy of solvation -27.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds