Wall clock time and date at job start Tue Mar 31 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99802 * 2 1 4 4 C 1.50699 * 109.46994 * 179.97438 * 3 2 1 5 5 C 1.38423 * 119.92464 * 270.02384 * 4 3 2 6 6 C 1.38380 * 120.30532 * 179.97438 * 5 4 3 7 7 C 1.37943 * 120.15047 * 359.71506 * 6 5 4 8 8 C 1.39649 * 119.84471 * 0.55643 * 7 6 5 9 9 C 1.47822 * 120.14877 * 179.71778 * 8 7 6 10 10 N 1.32582 * 119.98948 * 136.17633 * 9 8 7 11 11 C 1.31735 * 121.72141 * 180.02562 * 10 9 8 12 12 C 1.50699 * 119.24753 * 179.97438 * 11 10 9 13 13 C 1.38865 * 121.50693 * 0.25534 * 11 10 9 14 14 C 1.36895 * 119.79824 * 359.46775 * 13 11 10 15 15 C 1.41128 * 118.38926 * 0.51299 * 14 13 11 16 16 C 1.40885 * 120.71301 * 179.72806 * 15 14 13 17 17 H 1.07998 * 119.99322 * 151.68168 * 16 15 14 18 18 C 1.40069 * 120.00138 * 331.67359 * 16 15 14 19 19 N 1.30774 * 120.00476 * 348.21815 * 18 16 15 20 20 Si 1.86801 * 119.99904 * 168.21456 * 18 16 15 21 21 H 1.48501 * 109.47271 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47259 * 119.99946 * 20 18 16 23 23 H 1.48497 * 109.47345 * 240.00361 * 20 18 16 24 24 C 1.37893 * 119.92322 * 90.00041 * 4 3 2 25 25 H 1.08997 * 109.47266 * 299.99919 * 1 2 3 26 26 H 1.08997 * 109.46677 * 60.00312 * 1 2 3 27 27 H 1.08999 * 109.47026 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46952 * 59.99931 * 3 2 1 29 29 H 1.08994 * 109.47374 * 299.99931 * 3 2 1 30 30 H 1.07997 * 119.84654 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.92073 * 180.02562 * 6 5 4 32 32 H 1.07997 * 120.07582 * 180.30604 * 7 6 5 33 33 H 1.09003 * 109.47319 * 89.99660 * 12 11 10 34 34 H 1.09001 * 109.47249 * 329.99497 * 12 11 10 35 35 H 1.08996 * 109.47093 * 210.00155 * 12 11 10 36 36 H 1.07999 * 120.10407 * 179.74196 * 13 11 10 37 37 H 1.07994 * 120.80233 * 180.24071 * 14 13 11 38 38 H 0.96994 * 120.00237 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.07744 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2004 1.1317 1.2006 6 6 5.5798 1.0219 1.2104 7 6 6.2784 0.9604 0.0225 8 6 5.5913 1.0209 -1.1917 9 6 6.3337 0.9619 -2.4686 10 7 5.8871 0.2038 -3.4604 11 6 6.5217 0.1254 -4.6122 12 6 5.9645 -0.7543 -5.7015 13 6 7.6954 0.8306 -4.8435 14 6 8.2088 1.6371 -3.8638 15 6 7.5238 1.7163 -2.6325 16 6 8.0118 2.5267 -1.5884 17 1 7.3269 2.9513 -0.8693 18 6 9.3850 2.7817 -1.4830 19 7 10.2348 2.0938 -2.2006 20 14 10.0027 4.1044 -0.3176 21 1 8.8487 4.7326 0.3744 22 1 10.9096 3.4943 0.6877 23 1 10.7407 5.1375 -1.0877 24 6 4.1987 1.1320 -1.1942 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.6580 1.1748 2.1335 31 1 6.1102 0.9792 2.1502 32 1 7.3545 0.8698 0.0316 33 1 5.2795 -0.1757 -6.3212 34 1 5.4299 -1.5922 -5.2540 35 1 6.7810 -1.1316 -6.3171 36 1 8.1993 0.7464 -5.7951 37 1 9.1184 2.1957 -4.0276 38 1 11.1857 2.2706 -2.1278 39 1 3.6608 1.1740 -2.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239935793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:20 Heat of formation + Delta-G solvation = -7.345624 kcal Electronic energy + Delta-G solvation = -21362.109207 eV Core-core repulsion = 18233.713725 eV Total energy + Delta-G solvation = -3128.395482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.18699 -38.22130 -37.11162 -34.36907 -32.43082 -31.20772 -30.87979 -29.24257 -27.88767 -26.94432 -24.98485 -24.51361 -22.65256 -21.29194 -20.61783 -19.66808 -17.44881 -16.33412 -16.12147 -15.77577 -15.58453 -15.11363 -14.69454 -14.32069 -13.98115 -13.90000 -13.28318 -13.08142 -12.55187 -12.29822 -12.20623 -12.11061 -11.83562 -11.71116 -11.52600 -11.44205 -11.26367 -11.10105 -10.98748 -10.71768 -10.50119 -10.33735 -9.79642 -9.59093 -9.44461 -8.56647 -8.20947 -8.08345 -7.96674 -7.30113 -6.89761 -4.52924 1.81715 2.02947 2.59549 2.94165 2.98292 3.04164 3.11797 3.79262 3.98797 4.48786 4.64402 5.13492 5.19233 5.34356 5.38230 5.40590 5.48931 5.60743 5.63500 5.69905 5.77595 6.03195 6.10410 6.23802 6.24869 6.34075 6.39244 6.52102 6.62211 6.72738 6.82649 6.92376 7.01233 7.06163 7.16579 7.23972 7.28302 7.46646 7.61982 7.69724 7.85249 7.90417 8.35641 8.57517 8.64189 9.56771 9.97783 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.005944 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.548502 B = 4709.815215 C = 6486.977988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.109 3.891 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.134 4.134 7 C -0.085 4.085 8 C 0.021 3.979 9 C 0.017 3.983 10 N -0.449 5.449 11 C -0.007 4.007 12 C -0.074 4.074 13 C -0.144 4.144 14 C -0.126 4.126 15 C 0.083 3.917 16 C -0.440 4.440 17 H 0.089 0.911 18 C 0.073 3.927 19 N -0.790 5.790 20 Si 0.910 3.090 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.271 1.271 24 C -0.086 4.086 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.284 0.716 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.416 0.544 3.467 9.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.033 3.967 4 C -0.108 4.108 5 C -0.137 4.137 6 C -0.152 4.152 7 C -0.104 4.104 8 C 0.020 3.980 9 C -0.121 4.121 10 N -0.157 5.157 11 C -0.148 4.148 12 C -0.132 4.132 13 C -0.164 4.164 14 C -0.151 4.151 15 C 0.079 3.921 16 C -0.469 4.469 17 H 0.107 0.893 18 C -0.146 4.146 19 N -0.414 5.414 20 Si 0.734 3.266 21 H -0.180 1.180 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.105 4.105 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.794 -0.126 3.529 9.477 hybrid contribution 1.108 1.290 0.289 1.724 sum -7.687 1.164 3.818 8.661 Atomic orbital electron populations 1.22717 0.81764 1.02482 0.99649 1.88025 1.18930 1.28008 1.95302 1.21308 0.90675 0.84549 1.00118 1.19300 0.93030 1.04729 0.93741 1.20829 0.94303 1.02025 0.96527 1.20948 0.93855 1.02533 0.97827 1.21525 1.00970 0.96838 0.91080 1.18409 0.91668 0.96084 0.91833 1.19478 0.98431 1.01682 0.92502 1.66857 1.31971 1.17152 0.99734 1.20275 0.96027 1.04494 0.94037 1.20290 0.99512 0.97868 0.95528 1.21267 0.96849 0.99315 0.99002 1.21438 1.01233 1.00363 0.92104 1.18341 0.90533 0.90394 0.92850 1.19645 0.92245 1.24832 1.10178 0.89287 1.25996 0.96913 0.95586 0.96066 1.69748 1.04103 1.33374 1.34212 0.86205 0.79635 0.80640 0.80158 1.18009 1.19666 1.19579 1.21095 0.93717 0.98949 0.96736 0.94406 0.94229 0.89860 0.93013 0.92820 0.87187 0.86645 0.84753 0.93174 0.92550 0.92900 0.88326 0.85418 0.90500 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.96 10.69 -35.23 -0.38 -6.33 16 3 C 0.11 1.61 6.06 36.01 0.22 1.83 16 4 C -0.11 -1.93 5.50 -104.68 -0.58 -2.51 16 5 C -0.12 -2.00 9.70 -39.46 -0.38 -2.38 16 6 C -0.13 -2.38 10.03 -39.64 -0.40 -2.77 16 7 C -0.09 -1.79 7.85 -39.16 -0.31 -2.10 16 8 C 0.02 0.47 5.25 -104.91 -0.55 -0.08 16 9 C 0.02 0.43 6.43 -82.24 -0.53 -0.10 16 10 N -0.45 -11.16 10.05 -5.45 -0.05 -11.21 16 11 C -0.01 -0.15 6.79 -82.40 -0.56 -0.71 16 12 C -0.07 -1.36 10.15 36.01 0.37 -0.99 16 13 C -0.14 -3.31 9.64 -39.84 -0.38 -3.70 16 14 C -0.13 -3.14 8.72 -38.97 -0.34 -3.48 16 15 C 0.08 2.14 5.54 -106.41 -0.59 1.55 16 16 C -0.44 -10.86 6.73 -37.89 -0.26 -11.11 16 17 H 0.09 2.16 6.47 -52.49 -0.34 1.82 16 18 C 0.07 1.71 5.26 -17.32 -0.09 1.62 16 19 N -0.79 -19.08 10.91 55.55 0.61 -18.47 16 20 Si 0.91 17.62 29.58 -169.99 -5.03 12.60 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.09 -1.77 9.31 -39.16 -0.36 -2.14 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.65 8.08 -51.92 -0.42 0.23 16 29 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.13 2.95 6.76 -52.49 -0.35 2.59 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.13 3.22 6.33 -52.49 -0.33 2.89 16 38 H 0.28 6.22 8.29 -40.82 -0.34 5.89 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 331.55 15.07 5.00 5.00 Total: -1.00 -28.09 331.55 -8.71 -36.80 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.22 Total: 7.25 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -3.63 Total: -25.63 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: 0.55 Total: -29.68 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.38 Total: -6.33 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.09 -8.71 -36.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239935793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.457 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds