Wall clock time and date at job start Tue Mar 31 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99969 * 2 1 4 4 C 1.50704 * 109.47110 * 179.97438 * 3 2 1 5 5 C 1.37939 * 120.07707 * 359.72535 * 4 3 2 6 6 C 1.38370 * 120.14783 * 180.25675 * 5 4 3 7 7 C 1.38421 * 120.31203 * 0.03869 * 6 5 4 8 8 C 1.37895 * 120.15067 * 359.95969 * 7 6 5 9 9 C 1.39653 * 120.07414 * 180.02562 * 4 3 2 10 10 C 1.47822 * 120.15486 * 359.70191 * 9 4 3 11 11 N 1.32584 * 119.99002 * 309.06635 * 10 9 4 12 12 C 1.31737 * 121.72400 * 179.97438 * 11 10 9 13 13 C 1.50696 * 119.25173 * 180.02562 * 12 11 10 14 14 C 1.38872 * 121.50288 * 359.97438 * 12 11 10 15 15 C 1.36883 * 119.79887 * 0.02562 * 14 12 11 16 16 C 1.41126 * 118.39682 * 359.75566 * 15 14 12 17 17 C 1.40881 * 120.72119 * 180.26332 * 16 15 14 18 18 H 1.08004 * 120.00248 * 149.29675 * 17 16 15 19 19 C 1.40073 * 120.00062 * 329.29874 * 17 16 15 20 20 N 1.30764 * 119.99915 * 348.54179 * 19 17 16 21 21 Si 1.86799 * 120.00086 * 168.54490 * 19 17 16 22 22 H 1.48505 * 109.47261 * 89.99681 * 21 19 17 23 23 H 1.48494 * 109.47189 * 209.99943 * 21 19 17 24 24 H 1.48502 * 109.47043 * 330.00203 * 21 19 17 25 25 H 1.08994 * 109.46673 * 60.00205 * 1 2 3 26 26 H 1.08998 * 109.46591 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46932 * 299.99958 * 1 2 3 28 28 H 1.09006 * 109.47423 * 59.99891 * 3 2 1 29 29 H 1.08998 * 109.47506 * 299.99885 * 3 2 1 30 30 H 1.08002 * 119.92448 * 0.24709 * 5 4 3 31 31 H 1.08008 * 119.84256 * 180.02562 * 6 5 4 32 32 H 1.07998 * 119.92331 * 179.97438 * 7 6 5 33 33 H 1.07995 * 120.08064 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.47653 * 89.99994 * 13 12 11 35 35 H 1.09001 * 109.47426 * 210.00419 * 13 12 11 36 36 H 1.09006 * 109.46742 * 330.00484 * 13 12 11 37 37 H 1.08006 * 120.09988 * 179.97438 * 14 12 11 38 38 H 1.07998 * 120.80235 * 179.97438 * 15 14 12 39 39 H 0.97001 * 119.99897 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1075 -0.0581 0.0068 6 6 5.4867 -0.1690 0.0128 7 6 6.2789 0.9661 0.0134 8 6 5.6975 2.2165 0.0072 9 6 4.3057 2.3359 0.0013 10 6 3.6753 3.6730 -0.0053 11 7 2.7423 3.9614 -0.9021 12 6 2.1579 5.1415 -0.9386 13 6 1.1036 5.4091 -1.9817 14 6 2.4904 6.1442 -0.0372 15 6 3.4460 5.9132 0.9152 16 6 4.0647 4.6453 0.9516 17 6 5.0504 4.3528 1.9147 18 1 5.1657 3.3430 2.2800 19 6 5.8809 5.3717 2.3986 20 7 5.8995 6.5370 1.8056 21 14 6.9617 5.0658 3.8911 22 1 8.2792 4.5420 3.4492 23 1 7.1577 6.3391 4.6297 24 1 6.3076 4.0730 4.7809 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.4954 -0.9478 0.0072 31 1 5.9473 -1.1459 0.0172 32 1 7.3548 0.8722 0.0185 33 1 6.3166 3.1014 0.0072 34 1 0.1249 5.1348 -1.5879 35 1 1.1079 6.4682 -2.2392 36 1 1.3156 4.8176 -2.8725 37 1 1.9970 7.1036 -0.0880 38 1 3.7175 6.6815 1.6240 39 1 6.4749 7.2424 2.1405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239951380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:26 Heat of formation + Delta-G solvation = -6.114699 kcal Electronic energy + Delta-G solvation = -21978.594085 eV Core-core repulsion = 18850.251979 eV Total energy + Delta-G solvation = -3128.342105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.29242 -37.99770 -37.00836 -34.35051 -32.36780 -31.31249 -30.72390 -29.31971 -27.76007 -26.88187 -24.98375 -24.36771 -22.55957 -21.19089 -20.40080 -19.91611 -17.42824 -16.30429 -15.98622 -15.64044 -15.41690 -15.08566 -14.55562 -14.15364 -13.93495 -13.71297 -13.26097 -13.15642 -12.71718 -12.57126 -12.16111 -11.92055 -11.82958 -11.59333 -11.53141 -11.38257 -11.22101 -11.07537 -11.01448 -10.67499 -10.41640 -10.30769 -9.82244 -9.49009 -9.43127 -8.55384 -8.14155 -8.01599 -7.91781 -7.31961 -6.91115 -4.55368 1.86715 2.15300 2.57685 2.91027 2.97729 3.02796 3.09758 3.79800 4.09984 4.43942 4.53995 5.32488 5.39277 5.48901 5.52882 5.60407 5.63114 5.77789 5.81092 5.96331 5.99316 6.04415 6.15589 6.19121 6.29405 6.32294 6.41364 6.46682 6.68466 6.72779 6.84857 6.87747 6.97955 7.02250 7.14848 7.26939 7.39536 7.58416 7.64275 7.67463 7.84356 7.86780 8.33458 8.56019 8.62330 9.49607 9.98045 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.007453 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.918788 B = 3756.026647 C = 5216.639960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.395 6.395 3 C 0.111 3.889 4 C -0.082 4.082 5 C -0.109 4.109 6 C -0.141 4.141 7 C -0.131 4.131 8 C -0.090 4.090 9 C 0.030 3.970 10 C 0.017 3.983 11 N -0.450 5.450 12 C -0.007 4.007 13 C -0.074 4.074 14 C -0.144 4.144 15 C -0.122 4.122 16 C 0.086 3.914 17 C -0.439 4.439 18 H 0.087 0.913 19 C 0.075 3.925 20 N -0.791 5.791 21 Si 0.910 3.090 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.258 1.258 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 -5.495 -1.011 6.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.315 6.315 3 C 0.035 3.965 4 C -0.083 4.083 5 C -0.127 4.127 6 C -0.160 4.160 7 C -0.149 4.149 8 C -0.109 4.109 9 C 0.029 3.971 10 C -0.121 4.121 11 N -0.159 5.159 12 C -0.148 4.148 13 C -0.132 4.132 14 C -0.164 4.164 15 C -0.148 4.148 16 C 0.081 3.919 17 C -0.469 4.469 18 H 0.105 0.895 19 C -0.144 4.144 20 N -0.416 5.416 21 Si 0.734 3.266 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.182 1.182 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.147 0.853 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.623 -6.027 -1.599 7.212 hybrid contribution 0.658 1.072 1.361 1.853 sum -2.966 -4.955 -0.238 5.779 Atomic orbital electron populations 1.22644 0.81643 1.01947 0.99938 1.87770 1.19101 1.29011 1.95571 1.21258 0.90498 0.83132 1.01582 1.19687 0.93600 0.93026 1.01980 1.20729 0.94252 0.96972 1.00702 1.20995 0.93759 0.97817 1.03393 1.20971 0.99116 0.92663 1.02124 1.21259 0.94023 0.97330 0.98271 1.18134 0.92160 0.90428 0.96415 1.19485 1.01277 0.94641 0.96743 1.66828 1.06900 1.20128 1.22020 1.20255 1.02759 0.90894 1.00934 1.20289 0.95941 1.00169 0.96797 1.21251 0.99304 0.98341 0.97540 1.21377 0.95500 0.98569 0.99372 1.18323 0.91385 0.91163 0.90991 1.19540 1.12866 0.96197 1.18262 0.89547 1.25971 0.97201 0.94192 0.97062 1.69735 1.32395 1.03721 1.35754 0.86257 0.80243 0.79067 0.81081 1.19088 1.19988 1.18218 0.94214 0.90145 0.94403 0.92882 0.90259 0.86027 0.87147 0.86898 0.85344 0.93235 0.92862 0.92573 0.88339 0.85754 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 11.01 101.05 1.11 1.57 16 2 O -0.40 -6.84 9.19 -35.23 -0.32 -7.16 16 3 C 0.11 2.15 5.10 36.01 0.18 2.33 16 4 C -0.08 -1.70 5.91 -104.20 -0.62 -2.31 16 5 C -0.11 -2.00 9.37 -39.64 -0.37 -2.38 16 6 C -0.14 -2.40 10.04 -39.47 -0.40 -2.80 16 7 C -0.13 -2.34 10.03 -39.64 -0.40 -2.74 16 8 C -0.09 -1.89 8.14 -39.16 -0.32 -2.21 16 9 C 0.03 0.66 5.03 -104.90 -0.53 0.14 16 10 C 0.02 0.41 5.82 -82.24 -0.48 -0.07 16 11 N -0.45 -10.60 8.40 -5.45 -0.05 -10.65 16 12 C -0.01 -0.15 6.79 -82.40 -0.56 -0.71 16 13 C -0.07 -1.29 10.15 36.00 0.37 -0.93 16 14 C -0.14 -3.22 9.64 -39.84 -0.38 -3.60 16 15 C -0.12 -3.01 8.70 -38.98 -0.34 -3.34 16 16 C 0.09 2.18 5.52 -106.42 -0.59 1.59 16 17 C -0.44 -10.87 7.06 -37.89 -0.27 -11.14 16 18 H 0.09 2.13 6.91 -52.48 -0.36 1.77 16 19 C 0.07 1.75 5.25 -17.32 -0.09 1.66 16 20 N -0.79 -19.12 11.05 55.55 0.61 -18.51 16 21 Si 0.91 17.82 29.58 -169.99 -5.03 12.80 16 22 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.60 6.95 -51.93 -0.36 1.24 16 30 H 0.12 2.08 7.00 -52.49 -0.37 1.71 16 31 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 2.82 7.40 -52.49 -0.39 2.43 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.12 3.10 6.50 -52.49 -0.34 2.76 16 39 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -26.89 327.27 -8.70 -35.60 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.18 Total: 7.93 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -3.67 Total: -24.94 kcal Atomic # 7 Polarization: -29.73 SS G_CDS: 0.57 Total: -29.16 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.32 Total: -7.16 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.89 -8.70 -35.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239951380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.483 kcal (2) G-P(sol) polarization free energy of solvation -26.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds